Conservation of cofitness between QEN71_RS23895 and QEN71_RS04500 in Paraburkholderia sabiae LMG 24235

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 1.0 QEN71_RS04500 RluA family pseudouridine synthase 0.50 11
Paraburkholderia graminis OAS925 0.90 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase 0.81 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Burkholderia phytofirmans PsJN 0.90 BPHYT_RS06880 competence protein ComJ 0.81 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.25 8
Ralstonia solanacearum GMI1000 0.67 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.59 RS_RS05155 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum UW163 0.67 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.60 UW163_RS11840 RluA family pseudouridine synthase — —
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.60 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum PSI07 0.66 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.59 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.62 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS09005 competence protein ComJ 0.60 RR42_RS14155 pseudouridine synthase low > 128
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS10595 competence protein ComJ 0.59 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C low > 78
Castellaniella sp019104865 MT123 0.49 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 ABCV34_RS08415 RluA family pseudouridine synthase 0.38 2
Escherichia fergusonii Becca 0.44 EFB2_00316 Ribosomal RNA large subunit methyltransferase J 0.44 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.43 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 55
Escherichia coli ECOR27 0.44 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC100 0.44 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.43 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECRC62 0.44 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Enterobacter sp. TBS_079 0.44 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J 0.44 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Escherichia coli ECRC99 0.44 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.43 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC102 0.44 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.43 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli BL21 0.44 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent 0.44 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Escherichia coli ECRC101 0.44 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.43 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECOR38 0.43 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.44 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF1683 Protein involved in catabolism of external DNA 0.48 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 90
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4062 Protein involved in catabolism of external DNA 0.44 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Variovorax sp. SCN45 0.43 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) 0.46 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Klebsiella michiganensis M5al 0.43 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Escherichia coli ECRC98 0.43 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.43 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF515 Protein involved in catabolism of external DNA 0.44 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J 0.44 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia coli BW25113 0.43 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) 0.44 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Pectobacterium carotovorum WPP14 0.43 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.42 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Rahnella sp. WP5 0.42 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.44 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Serratia liquefaciens MT49 0.42 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.42 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Pantoea sp. MT58 0.42 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.42 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Variovorax sp. OAS795 0.42 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Dickeya dianthicola 67-19 0.42 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.39 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Dickeya dianthicola ME23 0.41 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.39 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dadantii 3937 0.41 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.40 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.39 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 62
Acidovorax sp. GW101-3H11 0.40 Ac3H11_3047 Protein involved in catabolism of external DNA 0.48 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 79
Erwinia tracheiphila SCR3 0.40 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Shewanella loihica PV-4 0.39 Shew_3648 hypothetical protein (RefSeq) 0.42 Shew_1594 RluA family pseudouridine synthase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.39 Sama_3563 hypothetical protein (RefSeq) 0.42 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Shewanella sp. ANA-3 0.39 Shewana3_4038 hypothetical protein (RefSeq) 0.43 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Pseudomonas sp. S08-1 0.38 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.38 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Pseudomonas putida KT2440 0.37 PP_4945 23S rRNA m(6)A2030 methyltransferase 0.39 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3679 Protein involved in catabolism of external DNA 0.40 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 103
Azospirillum brasilense Sp245 0.35 AZOBR_RS21900 lactate dehydrogenase 0.18 AZOBR_RS06905 pseudouridine synthase low > 97
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_4772 Protein of unknown function DUF519 0.39 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Agrobacterium fabrum C58 0.35 Atu1135 hypothetical protein 0.21 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_4772 Protein of unknown function DUF519 0.39 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_08990 lactate dehydrogenase 0.40 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.40 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_12840 lactate dehydrogenase 0.39 AO353_01405 23S rRNA pseudouridylate synthase 0.25 26
Pseudomonas fluorescens SBW25 0.35 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.40 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas simiae WCS417 0.35 PS417_02200 lactate dehydrogenase 0.40 PS417_21480 23S rRNA pseudouridylate synthase — —
Pseudomonas stutzeri RCH2 0.35 Psest_0408 Protein involved in catabolism of external DNA 0.39 Psest_1680 pseudouridine synthase, RluA family — —
Pseudomonas sp. RS175 0.35 PFR28_05056 Ribosomal RNA large subunit methyltransferase J 0.40 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Sinorhizobium meliloti 1021 0.34 SMc00608 hypothetical protein 0.21 SMc01275 ribosomal large subunit pseudouridine synthase C protein low > 103
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1481 Protein involved in catabolism of external DNA 0.38 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_219 Protein involved in catabolism of external DNA 0.39 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.25 75
Azospirillum sp. SherDot2 0.34 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J 0.19 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Rhizobium sp. OAE497 0.34 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.20 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Alteromonas macleodii MIT1002 0.34 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J 0.43 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C low > 70
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.36 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase low > 52
Rhodanobacter denitrificans MT42 0.32 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.36 LRK55_RS17750 RluA family pseudouridine synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.36 LRK54_RS17895 RluA family pseudouridine synthase low > 59
Rhodospirillum rubrum S1H 0.32 Rru_A1938 Protein of unknown function DUF519 (NCBI) 0.20 Rru_A2659 Pseudouridine synthase, RluD (NCBI) — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.33 ABZR86_RS02725 RluA family pseudouridine synthase 0.60 1
Lysobacter sp. OAE881 0.31 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.33 ABIE51_RS11800 RluA family pseudouridine synthase low > 62
Acinetobacter radioresistens SK82 0.31 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J 0.35 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.73 3
Phaeobacter inhibens DSM 17395 0.29 PGA1_c26480 Protein involved in catabolism of external DNA 0.21 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.1778.1 Protein involved in catabolism of external DNA 0.32 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Marinobacter adhaerens HP15 0.25 HP15_2563 protein containing DUF519 0.39 HP15_2221 pseudouridine synthase, RluA family low > 73
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.19 A4249_RS07865 RluA family pseudouridine synthase low > 48
Caulobacter crescentus NA1000 0.22 CCNA_01152 external DNA uptake/catabolism protein 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 66
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_01152 external DNA uptake/catabolism protein 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 67

Not shown: 6 genomes with orthologs for QEN71_RS23895 only; 4 genomes with orthologs for QEN71_RS04500 only