| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens GW456-L13 | 1.0 | PfGW456L13_2035 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | 1.0 | PfGW456L13_4740 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | 0.49 | 20 |
| Pseudomonas fluorescens FW300-N1B4 | 0.98 | Pf1N1B4_3508 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | 0.93 | Pf1N1B4_3051 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.97 | AO353_02710 | | (p)ppGpp synthetase | 0.91 | AO353_16310 | | phosphoenolpyruvate carboxylase | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.97 | AO356_19060 | | (p)ppGpp synthetase | 0.91 | AO356_06185 | | phosphoenolpyruvate carboxylase | 0.34 | 103 |
| Pseudomonas fluorescens FW300-N2E2 | 0.97 | Pf6N2E2_5723 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | 0.91 | Pf6N2E2_3103 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | 0.33 | 37 |
| Pseudomonas sp. RS175 | 0.96 | PFR28_03223 | | GTP pyrophosphokinase | 0.91 | PFR28_00368 | | Phosphoenolpyruvate carboxylase | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.95 | PFLU_RS22095 | | GTP diphosphokinase | 0.89 | PFLU_RS06130 | | phosphoenolpyruvate carboxylase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.95 | PFLU_RS22095 | | GTP diphosphokinase | 0.89 | PFLU_RS06130 | | phosphoenolpyruvate carboxylase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.95 | PS417_20150 | | (p)ppGpp synthetase | 0.90 | PS417_06060 | | phosphoenolpyruvate carboxylase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.93 | Psyr_3695 | | RelA/SpoT protein | 0.84 | Psyr_1318 | | Phosphoenolpyruvate carboxylase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.93 | Psyr_3695 | | RelA/SpoT protein | 0.84 | Psyr_1318 | | Phosphoenolpyruvate carboxylase | low | > 86 |
| Pseudomonas putida KT2440 | 0.91 | PP_1656 | | ATP:GTP 3'-pyrophosphotransferase | 0.81 | PP_1505 | | Phosphoenolpyruvate carboxylase | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.89 | Psest_1640 | | (p)ppGpp synthetase, RelA/SpoT family | 0.73 | Psest_1557 | | Phosphoenolpyruvate carboxylase | 0.36 | 33 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_18960 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase , (p)ppGpp synthetase I | 0.73 | OH686_06795 | | Phosphoenolpyruvate carboxylase | 0.64 | 22 |
| Marinobacter adhaerens HP15 | 0.63 | HP15_791 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | 0.53 | HP15_795 | | phosphoenolpyruvate carboxylase | low | > 73 |
| Rahnella sp. WP5 | 0.48 | EX31_RS07955 | | GTP diphosphokinase | 0.53 | EX31_RS14200 | | phosphoenolpyruvate carboxylase | low | > 89 |
| Shewanella oneidensis MR-1 | 0.48 | SO3455 | relA | GTP pyrophosphokinase (NCBI ptt file) | 0.54 | SO0274 | ppc | phosphoenolpyruvate carboxylase (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_1111 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | 0.53 | Shewana3_3906 | | phosphoenolpyruvate carboxylase (RefSeq) | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS06350 | relA | GTP diphosphokinase | 0.52 | LU632_RS19625 | ppc | phosphoenolpyruvate carboxylase | 0.63 | 61 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS17070 | | GTP diphosphokinase | 0.53 | HGI48_RS00850 | | phosphoenolpyruvate carboxylase | low | > 71 |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS17015 | | GTP diphosphokinase | 0.53 | DDA3937_RS20360 | | phosphoenolpyruvate carboxylase | low | > 74 |
| Klebsiella michiganensis M5al | 0.47 | BWI76_RS22805 | | GTP diphosphokinase | 0.53 | BWI76_RS00835 | | phosphoenolpyruvate carboxylase | 0.45 | 73 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS04115 | | GTP diphosphokinase | 0.54 | HER17_RS20655 | | phosphoenolpyruvate carboxylase | 0.63 | 20 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS18145 | | GTP diphosphokinase | 0.52 | DZA65_RS00895 | | phosphoenolpyruvate carboxylase | low | > 75 |
| Serratia liquefaciens MT49 | 0.47 | IAI46_03600 | | GTP diphosphokinase | 0.53 | IAI46_24525 | | phosphoenolpyruvate carboxylase | low | > 86 |
| Escherichia coli ECRC62 | 0.47 | BNILDI_10630 | relA | GTP diphosphokinase | 0.53 | BNILDI_05785 | ppc | phosphoenolpyruvate carboxylase | low | > 75 |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_12125 | relA | GTP diphosphokinase | 0.53 | NOLOHH_05740 | ppc | phosphoenolpyruvate carboxylase | low | > 75 |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_07880 | relA | GTP diphosphokinase | 0.53 | KEDOAH_14565 | ppc | phosphoenolpyruvate carboxylase | — | — |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS15515 | | GTP diphosphokinase | 0.53 | ECOLIN_RS22835 | | phosphoenolpyruvate carboxylase | low | > 55 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_23915 | relA | GTP diphosphokinase | 0.53 | JDDGAC_17220 | ppc | phosphoenolpyruvate carboxylase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_00947 | | GTP pyrophosphokinase | 0.53 | OHPLBJKB_04094 | | Phosphoenolpyruvate carboxylase | low | > 73 |
| Escherichia coli ECRC100 | 0.47 | OKFHMN_20250 | relA | GTP diphosphokinase | 0.53 | OKFHMN_13595 | ppc | phosphoenolpyruvate carboxylase | low | > 80 |
| Escherichia coli BW25113 | 0.47 | b2784 | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | 0.53 | b3956 | ppc | phosphoenolpyruvate carboxylase (NCBI) | 0.46 | 72 |
| Escherichia fergusonii Becca | 0.47 | EFB2_01133 | | GTP pyrophosphokinase | 0.53 | EFB2_04658 | | Phosphoenolpyruvate carboxylase | low | > 86 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_10775 | relA | GTP diphosphokinase | 0.53 | MCAODC_04095 | ppc | phosphoenolpyruvate carboxylase | low | > 87 |
| Escherichia coli BL21 | 0.47 | ECD_02629 | | (p)ppGpp synthetase I/GTP pyrophosphokinase | 0.53 | ECD_03841 | | phosphoenolpyruvate carboxylase | low | > 61 |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_19500 | relA | GTP diphosphokinase | 0.53 | HEPCGN_12240 | ppc | phosphoenolpyruvate carboxylase | 0.85 | 35 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_18020 | relA | GTP diphosphokinase | 0.53 | NIAGMN_11345 | ppc | phosphoenolpyruvate carboxylase | — | — |
| Pantoea sp. MT58 | 0.47 | IAI47_04120 | | GTP diphosphokinase | 0.53 | IAI47_00895 | | phosphoenolpyruvate carboxylase | 0.58 | 6 |
| Erwinia amylovora T8 | 0.47 | OLJFJH_09245 | | GTP diphosphokinase | 0.51 | OLJFJH_06110 | | Phosphoenolpyruvate carboxylase | low | > 58 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF4837 | | 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 | 0.54 | GFF2342 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 78 |
| Shewanella amazonensis SB2B | 0.46 | Sama_1033 | | GTP diphosphokinase (RefSeq) | 0.52 | Sama_0254 | | phosphoenolpyruvate carboxylase (RefSeq) | low | > 62 |
| Enterobacter asburiae PDN3 | 0.46 | EX28DRAFT_2864 | | (p)ppGpp synthetase, RelA/SpoT family | 0.53 | EX28DRAFT_4418 | | Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.46 | MPMX20_03653 | | GTP pyrophosphokinase | 0.53 | MPMX20_04524 | | Phosphoenolpyruvate carboxylase | low | > 85 |
| Shewanella loihica PV-4 | 0.45 | Shew_1202 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | 0.51 | Shew_0200 | | phosphoenolpyruvate carboxylase (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_12405 | | GTP diphosphokinase | 0.51 | CSW01_13390 | | phosphoenolpyruvate carboxylase | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_00794 | | GTP pyrophosphokinase | 0.49 | MIT1002_03491 | | Phosphoenolpyruvate carboxylase | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00539 | | GTP pyrophosphokinase | 0.51 | MPMX26_03013 | | Phosphoenolpyruvate carboxylase | 0.75 | 34 |
| Dechlorosoma suillum PS | 0.42 | Dsui_2816 | | (p)ppGpp synthetase, RelA/SpoT family | 0.26 | Dsui_1603 | | phosphoenolpyruvate carboxylase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.42 | ABZR86_RS19725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.24 | ABZR86_RS11555 | | phosphoenolpyruvate carboxylase | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.41 | LRK55_RS12430 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.25 | LRK55_RS11810 | | phosphoenolpyruvate carboxylase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS12725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.25 | LRK54_RS12075 | | phosphoenolpyruvate carboxylase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.40 | OKGIIK_02170 | relA | GTP diphosphokinase | 0.25 | OKGIIK_11820 | ppc | phosphoenolpyruvate carboxylase | low | > 52 |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS15685 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.25 | RPSI07_RS13100 | | phosphoenolpyruvate carboxylase | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS05265 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.24 | QEN71_RS24955 | | phosphoenolpyruvate carboxylase | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS13745 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.25 | ABZR87_RS16140 | | phosphoenolpyruvate carboxylase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS07930 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.25 | RS_RS11840 | | phosphoenolpyruvate carboxylase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.39 | RR42_RS06585 | | GTP pyrophosphokinase | 0.24 | RR42_RS15905 | | phosphoenolpyruvate carboxylase | low | > 128 |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS01805 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.25 | RALBFv3_RS04250 | | phosphoenolpyruvate carboxylase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS15115 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.25 | UW163_RS09420 | | phosphoenolpyruvate carboxylase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.38 | HSERO_RS09855 | | GTP pyrophosphokinase | 0.24 | HSERO_RS14670 | | phosphoenolpyruvate carboxylase | low | > 78 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.38 | H281DRAFT_04499 | | GTP pyrophosphokinase | 0.25 | H281DRAFT_00197 | | Phosphoenolpyruvate carboxylase, type 1 | low | > 103 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.38 | Xcc-8004.1489.1 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.24 | Xcc-8004.4314.1 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 74 |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_002905 | | GTP pyrophosphokinase | 0.25 | ABIE53_001314 | | phosphoenolpyruvate carboxylase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS13655 | | GTP pyrophosphokinase | 0.24 | BPHYT_RS05225 | | phosphoenolpyruvate carboxylase | 0.33 | 4 |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS08440 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.23 | ABCV34_RS14805 | | phosphoenolpyruvate carboxylase | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.36 | Ac3H11_362 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.25 | Ac3H11_3553 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | 0.50 | 25 |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS05170 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.23 | ABIE51_RS18965 | | phosphoenolpyruvate carboxylase | 0.82 | 38 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF4925 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.25 | GFF115 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 90 |
| Variovorax sp. SCN45 | 0.34 | GFF403 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.24 | GFF3838 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 127 |
| Synechococcus elongatus PCC 7942 | 0.34 | Synpcc7942_1377 | | metal dependent phosphohydrolase | 0.24 | Synpcc7942_2252 | ppc | phosphoenolpyruvate carboxylase | — | — |
| Bifidobacterium breve UCC2003 | 0.30 | BBR_RS16410 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.18 | BBR_RS10525 | | phosphoenolpyruvate carboxylase | — | — |
Not shown: 9 genomes with orthologs for PfGW456L13_2035 only; 11 genomes with orthologs for PfGW456L13_4740 only