| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_4412 | | Ammonium transporter | 1.0 | Pf6N2E2_5557 | | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | 0.50 | 14 |
| Pseudomonas fluorescens FW300-N2C3 | 1.00 | AO356_12705 | | ammonia channel protein | 0.98 | AO356_18165 | | serine dehydratase | low | > 104 |
| Pseudomonas sp. RS175 | 0.99 | PFR28_04382 | | Ammonia channel | 0.97 | PFR28_03384 | | L-serine dehydratase 2 | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.91 | Pf1N1B4_2167 | | Ammonium transporter | 0.95 | Pf1N1B4_622 | | L-serine dehydratase (EC 4.3.1.17) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_838 | | Ammonium transporter | 0.94 | PfGW456L13_1867 | | L-serine dehydratase (EC 4.3.1.17) | 0.31 | 76 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS29300 | | ammonium transporter | 0.94 | PFLU_RS24005 | | L-serine ammonia-lyase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS29300 | | ammonium transporter | 0.94 | PFLU_RS24005 | | L-serine ammonia-lyase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_27615 | | ammonia channel protein | 0.93 | PS417_22365 | | serine dehydratase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_09070 | | ammonia channel protein | 0.95 | AO353_03505 | | serine dehydratase | 0.37 | 15 |
| Pseudomonas sp. S08-1 | 0.87 | OH686_13760 | | Ammonium transporter | 0.88 | OH686_16810 | | L-serine ammonia-lyase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_3772 | | ammonium transporter | 0.82 | Psest_0784 | | L-serine dehydratase, iron-sulfur-dependent, single chain form | 0.19 | 24 |
| Pseudomonas putida KT2440 | 0.83 | PP_5233 | | ammonium transporter AmtB | 0.89 | PP_0987 | | L-serine dehydratase | low | > 96 |
| Dyella japonica UNC79MFTsu3.2 | 0.71 | ABZR86_RS09495 | | ammonium transporter | 0.69 | ABZR86_RS19060 | | L-serine ammonia-lyase | low | > 74 |
| Paraburkholderia sabiae LMG 24235 | 0.59 | QEN71_RS01405 | | ammonium transporter | 0.68 | QEN71_RS29225 | | L-serine ammonia-lyase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.57 | H281DRAFT_02012 | | ammonium transporter | 0.68 | H281DRAFT_02407 | | L-serine ammonia-lyase | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.57 | ABIE53_000655 | | Amt family ammonium transporter | 0.68 | ABIE53_000240 | | L-serine dehydratase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS02550 | | ammonia channel protein | 0.68 | BPHYT_RS19340 | | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | low | > 109 |
| Azospirillum sp. SherDot2 | 0.56 | MPMX19_02223 | | Ammonia channel | 0.47 | MPMX19_04703 | | L-serine dehydratase TdcG | low | > 112 |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS22460 | | ammonia channel protein | 0.69 | RPSI07_RS08570 | | L-serine ammonia-lyase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS01690 | | ammonium transporter | 0.67 | RS_RS16515 | | L-serine ammonia-lyase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS10850 | | ammonia channel protein | 0.67 | RALBFv3_RS08665 | | L-serine ammonia-lyase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS02730 | | ammonia channel protein | 0.67 | UW163_RS04945 | | L-serine ammonia-lyase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.52 | ABZR87_RS06700 | | ammonium transporter | 0.67 | ABZR87_RS03940 | | L-serine ammonia-lyase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS01760 | | ammonia channel protein | 0.68 | RR42_RS20080 | | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | 0.36 | 10 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_0778 | | ammonium transporter (RefSeq) | 0.56 | Shewana3_2295 | | L-serine ammonia-lyase (RefSeq) | low | > 73 |
| Variovorax sp. SCN45 | 0.51 | GFF5119 | | Ammonium transporter | 0.55 | GFF3439 | | L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) | low | > 127 |
| Sphingomonas koreensis DSMZ 15582 | 0.50 | Ga0059261_2256 | | ammonium transporter | 0.48 | Ga0059261_0220 | | L-serine dehydratase, iron-sulfur-dependent, single chain form | low | > 68 |
| Rhizobium sp. OAE497 | 0.49 | ABIE40_RS18420 | | ammonium transporter | 0.48 | ABIE40_RS09785 | | L-serine ammonia-lyase | low | > 107 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.249.1 | | Ammonium transporter | 0.68 | Xcc-8004.1601.1 | | L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.49 | LU632_RS18270 | amtB | ammonium transporter AmtB | 0.52 | LU632_RS13185 | sdaA | L-serine ammonia-lyase | low | > 74 |
| Bacteroides ovatus ATCC 8483 | 0.48 | BACOVA_03766 | | ammonium transporter | 0.29 | BACOVA_05536 | | L-serine ammonia-lyase | low | > 94 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_05085 | | ammonium transporter AmtB | 0.51 | IAI46_14795 | | L-serine ammonia-lyase | low | > 86 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_3401 | | Ammonium transporter | 0.65 | Ac3H11_929 | | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | low | > 79 |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS01435 | | ammonium transporter | 0.65 | ABIE51_RS16145 | | L-serine ammonia-lyase | low | > 62 |
| Pantoea sp. MT58 | 0.48 | IAI47_14580 | | ammonium transporter AmtB | 0.52 | IAI47_08785 | | L-serine ammonia-lyase | low | > 76 |
| Sinorhizobium meliloti 1021 | 0.48 | SMc03807 | | ammonium transporter | 0.48 | SMc01256 | | L-serine dehydratase | low | > 103 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS15785 | | ammonium transporter AmtB | 0.52 | HER17_RS06460 | | L-serine ammonia-lyase | low | > 75 |
| Caulobacter crescentus NA1000 | 0.47 | CCNA_01399 | | ammonium transporter/methylammonium transporter | 0.51 | CCNA_03206 | | L-serine dehydratase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.47 | CCNA_01399 | | ammonium transporter/methylammonium transporter | 0.51 | CCNA_03206 | | L-serine dehydratase | low | > 67 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF4368 | | Ammonium transporter | 0.50 | GFF4853 | | L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) | low | > 78 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS06605 | | ammonium transporter | 0.52 | BWI76_RS17875 | | L-serine ammonia-lyase | low | > 92 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS02700 | | ammonium transporter AmtB | 0.51 | ECOLIN_RS15595 | | L-serine ammonia-lyase II | low | > 55 |
| Escherichia fergusonii Becca | 0.46 | EFB2_03606 | | Ammonia channel | 0.51 | EFB2_01120 | | L-serine dehydratase 2 | low | > 86 |
| Agrobacterium fabrum C58 | 0.46 | Atu2758 | | ammonium transporter | 0.47 | Atu1759 | | L-serine dehydratase | low | > 89 |
| Escherichia coli ECOR27 | 0.45 | NOLOHH_01195 | amtB | ammonium transporter AmtB | 0.51 | NOLOHH_12055 | sdaB | L-serine ammonia-lyase II | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.45 | OHPLBJKB_03222 | | Ammonia channel | 0.51 | OHPLBJKB_00934 | | L-serine dehydratase 2 | low | > 73 |
| Escherichia coli ECRC102 | 0.45 | NIAGMN_06315 | amtB | ammonium transporter AmtB | 0.51 | NIAGMN_01515 | sdaA | L-serine ammonia-lyase | — | — |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_01043 | | Ammonia channel | 0.52 | MPMX20_02719 | | L-serine dehydratase 1 | low | > 85 |
| Escherichia coli BL21 | 0.45 | ECD_00403 | | ammonium transporter | 0.51 | ECD_02642 | | L-serine dehydratase 2 | low | > 61 |
| Escherichia coli ECRC98 | 0.45 | JDDGAC_11915 | amtB | ammonium transporter AmtB | 0.51 | JDDGAC_01125 | sdaA | L-serine ammonia-lyase | low | > 86 |
| Escherichia coli BW25113 | 0.45 | b0451 | amtB | ammonium transporter (NCBI) | 0.51 | b2797 | sdaB | L-serine deaminase II (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.45 | BNILDI_22610 | amtB | ammonium transporter AmtB | 0.51 | BNILDI_10560 | sdaB | L-serine ammonia-lyase II | low | > 75 |
| Escherichia coli ECRC100 | 0.45 | OKFHMN_08260 | amtB | ammonium transporter AmtB | 0.51 | OKFHMN_26550 | sdaA | L-serine ammonia-lyase | low | > 80 |
| Escherichia coli ECRC99 | 0.45 | KEDOAH_19705 | amtB | ammonium transporter AmtB | 0.51 | KEDOAH_01560 | sdaA | L-serine ammonia-lyase | — | — |
| Escherichia coli ECOR38 | 0.45 | HEPCGN_06875 | amtB | ammonium transporter AmtB | 0.51 | HEPCGN_19430 | sdaB | L-serine ammonia-lyase II | low | > 87 |
| Escherichia coli ECRC101 | 0.45 | MCAODC_27485 | amtB | ammonium transporter AmtB | 0.51 | MCAODC_18860 | sdaA | L-serine ammonia-lyase | low | > 87 |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_2518 | | ammonium transporter | 0.52 | EX28DRAFT_0745 | | L-serine dehydratase, iron-sulfur-dependent, single chain form | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_14925 | | Ammonium transporter | 0.69 | OKGIIK_01565 | sdaA | L-serine ammonia-lyase | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS07860 | | ammonium transporter | 0.70 | LRK55_RS05035 | | L-serine ammonia-lyase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS08110 | | ammonium transporter | 0.70 | LRK54_RS05255 | | L-serine ammonia-lyase | low | > 59 |
| Rahnella sp. WP5 | 0.44 | EX31_RS22320 | | ammonium transporter AmtB | 0.51 | EX31_RS24715 | | L-serine ammonia-lyase | low | > 89 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS05745 | | ammonium transporter AmtB | 0.52 | HGI48_RS11300 | | L-serine ammonia-lyase | low | > 71 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS06070 | | ammonium transporter AmtB | 0.52 | DZA65_RS11645 | | L-serine ammonia-lyase | low | > 75 |
| Phaeobacter inhibens DSM 17395 | 0.42 | PGA1_c14730 | | ammonia channel | 0.46 | PGA1_c23770 | | L-serine dehydratase TdcG | low | > 62 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS05700 | | ammonium transporter AmtB | 0.52 | DDA3937_RS11265 | | L-serine ammonia-lyase | low | > 74 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.41 | DVU1231 | amt | ammonium transporter (TIGR) | 0.32 | DVU2147 | sda | L-serine dehydratase, putative (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.38 | DvMF_0866 | | ammonium transporter (RefSeq) | 0.30 | DvMF_0011 | | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS04770 | | ammonium transporter | 0.58 | ABCV34_RS14845 | | L-serine ammonia-lyase | low | > 48 |
| Mycobacterium tuberculosis H37Rv | 0.37 | Rv2920c | | Probable ammonium-transport integral membrane protein Amt | 0.50 | Rv0069c | | Probable L-serine dehydratase SdaA (L-serine deaminase) (SDH) (L-SD) | low | > 58 |
| Bifidobacterium breve UCC2003 | 0.35 | BBR_RS11515 | | ammonium transporter | 0.52 | BBR_RS14155 | | L-serine ammonia-lyase | low | > 34 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.35 | ABZR88_RS18240 | | ammonium transporter | 0.50 | ABZR88_RS18475 | | L-serine ammonia-lyase | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.35 | CA265_RS14975 | | ammonia channel protein | 0.48 | CA265_RS21785 | | L-serine ammonia-lyase | low | > 88 |
| Bacteroides stercoris CC31F | 0.23 | HMPREF1181_RS16015 | | ammonium transporter | 0.29 | HMPREF1181_RS11755 | | L-serine ammonia-lyase | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.22 | BT0544 | | ammonium transporter (NCBI ptt file) | 0.30 | BT4678 | | L-serine dehydratase (NCBI ptt file) | low | > 81 |
Not shown: 16 genomes with orthologs for Pf6N2E2_4412 only; 11 genomes with orthologs for Pf6N2E2_5557 only