Conservation of cofitness between Pf6N2E2_5159 and Pf6N2E2_5522 in Pseudomonas fluorescens FW300-N2E2

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase 1.0 Pf6N2E2_5522 FIG001943: hypothetical protein YajQ 0.31 15
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_16090 glutamyl-Q tRNA(Asp) ligase 1.00 AO356_17960 nucleotide-binding protein low > 104
Pseudomonas sp. RS175 0.91 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase 0.97 PFR28_03425 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase 0.97 Pf1N1B4_650 FIG001943: hypothetical protein YajQ low > 87
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_14415 glutamyl-Q tRNA(Asp) ligase 0.97 AO353_03640 nucleotide-binding protein low > 101
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1527 glutamyl-Q-tRNA synthetase 0.97 PfGW456L13_1840 FIG001943: hypothetical protein YajQ — —
Pseudomonas fluorescens SBW25 0.85 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.95 PFLU_RS24150 YajQ family cyclic di-GMP-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.95 PFLU_RS24150 YajQ family cyclic di-GMP-binding protein low > 109
Pseudomonas simiae WCS417 0.85 PS417_23880 glutamyl-Q tRNA(Asp) ligase 0.96 PS417_22510 nucleotide-binding protein — —
Pseudomonas sp. S08-1 0.83 OH686_17275 glutamyl-queuosine tRNA(Asp) synthetase 0.82 OH686_08210 UPF0234 protein Yitk low > 80
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.89 Psyr_4087 Protein of unknown function DUF520 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.89 Psyr_4087 Protein of unknown function DUF520 — —
Pseudomonas stutzeri RCH2 0.78 Psest_1002 glutamyl-queuosine tRNA(Asp) synthetase 0.88 Psest_1142 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas putida KT2440 0.74 PP_4694 Glutamyl-Q tRNA(Asp) synthetase 0.84 PP_1352 UPF0234 protein PP_1352 low > 96
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase 0.48 OHPLBJKB_03250 hypothetical protein low > 73
Escherichia coli ECOR27 0.48 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 NOLOHH_01340 yajQ nucleotide binding protein YajQ low > 75
Escherichia coli BW25113 0.48 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) 0.48 b0426 yajQ orf, hypothetical protein (VIMSS) low > 76
Escherichia coli BL21 0.48 ECD_00143 glutamyl-Q tRNA(Asp) synthetase 0.48 ECD_00374 phage Phi6 host factor, ATP/GTP binding protein low > 61
Escherichia coli ECRC62 0.47 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 BNILDI_22755 yajQ nucleotide binding protein YajQ low > 75
Escherichia coli ECOR38 0.47 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 HEPCGN_07020 yajQ nucleotide binding protein YajQ low > 87
Escherichia fergusonii Becca 0.47 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase 0.48 EFB2_03631 hypothetical protein low > 86
Escherichia coli ECRC102 0.47 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 NIAGMN_06445 yajQ nucleotide binding protein YajQ — —
Escherichia coli ECRC99 0.47 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 KEDOAH_19575 yajQ nucleotide binding protein YajQ — —
Escherichia coli Nissle 1917 0.47 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS 0.48 ECOLIN_RS02565 nucleotide binding protein YajQ — —
Escherichia coli ECRC101 0.47 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 MCAODC_27615 yajQ nucleotide binding protein YajQ low > 87
Escherichia coli ECRC100 0.47 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 OKFHMN_08390 yajQ nucleotide binding protein YajQ — —
Escherichia coli ECRC98 0.47 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 JDDGAC_12045 yajQ nucleotide binding protein YajQ low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF88 glutamyl-Q-tRNA synthetase 0.50 GFF4337 FIG001943: hypothetical protein YajQ low > 78
Serratia liquefaciens MT49 0.46 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS 0.51 IAI46_04955 YajQ family cyclic di-GMP-binding protein low > 86
Enterobacter sp. TBS_079 0.46 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase 0.50 MPMX20_01017 hypothetical protein low > 85
Dickeya dianthicola 67-19 0.46 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 HGI48_RS05620 YajQ family cyclic di-GMP-binding protein — —
Dechlorosoma suillum PS 0.45 Dsui_1040 glutamyl-queuosine tRNA(Asp) synthetase 0.38 Dsui_3245 hypothetical protein low > 51
Dickeya dianthicola ME23 0.45 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 DZA65_RS05945 YajQ family cyclic di-GMP-binding protein 0.34 64
Rahnella sp. WP5 0.45 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS 0.48 EX31_RS22185 YajQ family cyclic di-GMP-binding protein low > 89
Pectobacterium carotovorum WPP14 0.45 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 HER17_RS15905 YajQ family cyclic di-GMP-binding protein low > 75
Enterobacter asburiae PDN3 0.44 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase 0.50 EX28DRAFT_2545 Uncharacterized protein conserved in bacteria low > 76
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS00575 tRNA glutamyl-Q(34) synthetase GluQRS 0.51 ABZR86_RS00410 YajQ family cyclic di-GMP-binding protein low > 74
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0057 glutamyl-queuosine tRNA(Asp) synthetase 0.57 B158DRAFT_0029 Uncharacterized protein conserved in bacteria low > 40
Dickeya dadantii 3937 0.44 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 DDA3937_RS05560 YajQ family cyclic di-GMP-binding protein low > 74
Erwinia tracheiphila SCR3 0.44 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.50 LU632_RS18450 YajQ family cyclic di-GMP-binding protein low > 74
Acinetobacter radioresistens SK82 0.43 MPMX26_00176 Glutamyl-Q tRNA(Asp) synthetase 0.48 MPMX26_02644 hypothetical protein low > 36
Klebsiella michiganensis M5al 0.43 BWI76_RS05010 tRNA glutamyl-Q synthetase 0.52 BWI76_RS06410 YajQ family cyclic di-GMP-binding protein low > 92
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2261.1 glutamyl-Q-tRNA synthetase 0.52 Xcc-8004.4605.1 FIG001943: hypothetical protein YajQ low > 74
Pantoea sp. MT58 0.43 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS 0.50 IAI47_14710 YajQ family cyclic di-GMP-binding protein low > 76
Lysobacter sp. OAE881 0.42 ABIE51_RS13520 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 ABIE51_RS18465 YajQ family cyclic di-GMP-binding protein low > 62
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.51 CSW01_07570 nucleotide-binding protein low > 62
Shewanella oneidensis MR-1 0.42 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) 0.48 SO3815 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.42 Sama_0779 glutamyl-tRNA synthetase domain-containing protein (RefSeq) 0.49 Sama_2557 putative nucleotide-binding protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.42 HP15_331 glutamyl-Q tRNA(Asp) synthetase 0.56 HP15_2364 nucleotide-binding protein low > 73
Shewanella sp. ANA-3 0.41 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) 0.48 Shewana3_0782 putative nucleotide-binding protein (RefSeq) low > 73
Shewanella loihica PV-4 0.41 Shew_3130 glutamate--tRNA ligase (RefSeq) 0.49 Shew_2893 nucleotide-binding protein (RefSeq) low > 60
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS24480 tRNA glutamyl-Q(34) synthetase GluQRS 0.38 QEN71_RS02775 YajQ family cyclic di-GMP-binding protein — —
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_03640 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.48 OKGIIK_03500 yajQ YajQ family cyclic di-GMP-binding protein low > 52
Rhodanobacter denitrificans MT42 0.41 LRK55_RS14535 tRNA glutamyl-Q(34) synthetase GluQRS 0.48 LRK55_RS14390 YajQ family cyclic di-GMP-binding protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS14820 tRNA glutamyl-Q(34) synthetase GluQRS 0.49 LRK54_RS14675 YajQ family cyclic di-GMP-binding protein low > 59
Paraburkholderia graminis OAS925 0.41 ABIE53_001439 glutamyl-Q tRNA(Asp) synthetase 0.38 ABIE53_003357 uncharacterized protein YajQ (UPF0234 family) — —
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00309 glutamyl-Q tRNA(Asp) synthetase 0.38 H281DRAFT_04122 hypothetical protein — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS15535 tRNA glutamyl-Q(34) synthetase GluQRS 0.44 ABZR87_RS00820 YajQ family cyclic di-GMP-binding protein low > 80
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS06160 glutamyl-Q tRNA(Asp) ligase 0.38 BPHYT_RS15930 nucleotide-binding protein — —
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_0922 gltX Glutamate--tRNA ligase 0.37 Synpcc7942_0865 nucleotide-binding protein low > 38
Alteromonas macleodii MIT1002 0.39 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase 0.54 MIT1002_04129 putative nucleotide-binding protein low > 70
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS17850 glutamyl-Q tRNA(Asp) ligase 0.42 HSERO_RS07165 nucleotide-binding protein low > 78
Ralstonia solanacearum UW163 0.38 UW163_RS10025 tRNA glutamyl-Q(34) synthetase GluQRS 0.43 UW163_RS08465 YajQ family cyclic di-GMP-binding protein — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS03645 tRNA glutamyl-Q(34) synthetase GluQRS 0.43 RALBFv3_RS05160 YajQ family cyclic di-GMP-binding protein low > 76
Castellaniella sp019104865 MT123 0.38 ABCV34_RS12295 glutamyl-Q tRNA(Asp) synthetase 0.49 ABCV34_RS15080 YajQ family cyclic di-GMP-binding protein low > 48
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS14805 glutamyl-Q tRNA(Asp) ligase 0.41 RR42_RS17155 nucleotide-binding protein — —
Ralstonia solanacearum PSI07 0.37 RPSI07_RS13585 tRNA glutamyl-Q(34) synthetase GluQRS 0.42 RPSI07_RS12140 YajQ family cyclic di-GMP-binding protein — —
Acidovorax sp. GW101-3H11 0.37 Ac3H11_4162 glutamyl-Q-tRNA synthetase 0.43 Ac3H11_2620 FIG001943: hypothetical protein YajQ — —
Ralstonia solanacearum GMI1000 0.37 RS_RS11090 tRNA glutamyl-Q(34) synthetase GluQRS 0.41 RS_RS12780 nucleotide-binding protein low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF5183 glutamyl-Q-tRNA synthetase 0.42 GFF292 FIG001943: hypothetical protein YajQ — —
Variovorax sp. SCN45 0.35 GFF592 Glutamyl-Q tRNA(Asp) synthetase 0.44 GFF3099 UPF0234 protein Yitk — —
Variovorax sp. OAS795 0.35 ABID97_RS18025 tRNA glutamyl-Q(34) synthetase GluQRS 0.44 ABID97_RS21685 YajQ family cyclic di-GMP-binding protein — —
Desulfovibrio vulgaris Miyazaki F 0.29 DvMF_0334 Glutamate--tRNA ligase (RefSeq) 0.47 DvMF_3058 putative nucleotide-binding protein (RefSeq) low > 51

Not shown: 10 genomes with orthologs for Pf6N2E2_5159 only; 8 genomes with orthologs for Pf6N2E2_5522 only