Conservation of cofitness between PP_0366 and PP_5303 in Pseudomonas putida KT2440

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0366 dethiobiotin synthetase 1.0 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.50 9
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.97 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.77 16
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.98 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.57 13
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_14155 dethiobiotin synthetase 0.97 AO356_12475 reactive intermediate/imine deaminase low > 104
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27630 dethiobiotin synthase 0.97 PFLU_RS29515 RidA family protein 0.44 11
Pseudomonas sp. RS175 0.77 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.98 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase — —
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27630 dethiobiotin synthase 0.97 PFLU_RS29515 RidA family protein low > 109
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.97 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup low > 103
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_07505 dethiobiotin synthetase 0.97 AO353_09285 reactive intermediate/imine deaminase 0.56 52
Pseudomonas simiae WCS417 0.76 PS417_25985 dethiobiotin synthetase 0.97 PS417_27835 endoribonuclease 0.20 55
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_4683 dethiobiotin synthase 0.89 Psyr_0208 endoribonuclease L-PSP low > 86
Pseudomonas sp. S08-1 0.72 OH686_10335 dethiobiotin synthase 0.93 OH686_13545 RidA/YER057c/UK114 superfamily protein low > 80
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_4683 dethiobiotin synthase 0.89 Psyr_0208 endoribonuclease L-PSP low > 86
Pseudomonas stutzeri RCH2 0.62 Psest_0415 dethiobiotin synthase 0.90 Psest_3818 endoribonuclease L-PSP, putative 0.49 19
Shewanella loihica PV-4 0.53 Shew_1722 dethiobiotin synthase (RefSeq) 0.73 Shew_3500 putative endoribonuclease L-PSP (RefSeq) — —
Shewanella sp. ANA-3 0.51 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.73 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) — —
Shewanella oneidensis MR-1 0.51 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.73 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) — —
Marinobacter adhaerens HP15 0.49 HP15_2482 dethiobiotin synthetase 0.71 HP15_306 YjgF-like protein 0.46 40
Pantoea sp. MT58 0.47 IAI47_13515 ATP-dependent dethiobiotin synthetase BioD 0.41 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase low > 76
Dickeya dianthicola 67-19 0.47 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD 0.41 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase — —
Dickeya dianthicola ME23 0.47 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD 0.41 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS12700 dethiobiotin synthase 0.66 ABZR86_RS11845 RidA family protein low > 74
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2213 dethiobiotin synthase 0.39 EX28DRAFT_3444 reactive intermediate/imine deaminase low > 76
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_05660 dethiobiotin synthase 0.43 CSW01_12735 RidA family protein low > 62
Serratia liquefaciens MT49 0.45 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD 0.39 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase low > 86
Dickeya dadantii 3937 0.45 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD 0.42 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase low > 74
Enterobacter sp. TBS_079 0.45 MPMX20_01406 ATP-dependent dethiobiotin synthetase BioD 1 0.40 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase low > 85
Klebsiella michiganensis M5al 0.44 BWI76_RS08775 dethiobiotin synthase 0.42 BWI76_RS02985 reactive intermediate/imine deaminase low > 92
Escherichia fergusonii Becca 0.44 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 0.42 EFB2_00701 Putative reactive intermediate deaminase TdcF low > 86
Escherichia coli Nissle 1917 0.44 ECOLIN_RS04145 dethiobiotin synthase 0.42 ECOLIN_RS17920 enamine/imine deaminase — —
Escherichia coli ECRC101 0.44 MCAODC_25600 bioD dethiobiotin synthase 0.42 MCAODC_08935 tdcF enamine/imine deaminase — —
Escherichia coli ECRC99 0.44 KEDOAH_21525 bioD dethiobiotin synthase 0.42 KEDOAH_09725 tdcF enamine/imine deaminase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 0.42 OHPLBJKB_00587 Putative reactive intermediate deaminase TdcF low > 73
Escherichia coli BL21 0.44 ECD_00745 dethiobiotin synthetase 0.42 ECD_02980 putative reactive intermediate deaminase low > 60
Escherichia coli ECRC98 0.44 JDDGAC_10020 bioD dethiobiotin synthase 0.42 JDDGAC_22055 tdcF enamine/imine deaminase — —
Escherichia coli BW25113 0.44 b0778 bioD dethiobiotin synthetase (NCBI) 0.42 b3113 yhaR orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECOR27 0.44 NOLOHH_22755 bioD dethiobiotin synthase 0.42 NOLOHH_10200 tdcF enamine/imine deaminase low > 57
Escherichia coli ECRC101 0.44 OKFHMN_06385 bioD dethiobiotin synthase 0.42 OKFHMN_18420 tdcF enamine/imine deaminase — —
Escherichia coli ECRC102 0.44 NIAGMN_04430 bioD dethiobiotin synthase 0.42 NIAGMN_16185 tdcF enamine/imine deaminase — —
Pectobacterium carotovorum WPP14 0.44 HER17_RS13445 dethiobiotin synthase 0.43 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Escherichia coli ECOR38 0.43 HEPCGN_01655 bioD dethiobiotin synthase 0.42 HEPCGN_17255 tdcF enamine/imine deaminase low > 85
Escherichia coli ECRC62 0.43 BNILDI_21025 bioD dethiobiotin synthase 0.42 BNILDI_01325 tdcF enamine/imine deaminase — —
Dechlorosoma suillum PS 0.43 Dsui_2884 dethiobiotin synthase 0.78 Dsui_0312 endoribonuclease L-PSP, putative — —
Erwinia tracheiphila SCR3 0.43 LU632_RS09145 bioD dethiobiotin synthase 0.40 LU632_RS20960 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Lysobacter sp. OAE881 0.42 ABIE51_RS17990 dethiobiotin synthase 0.64 ABIE51_RS17260 RidA family protein low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) 0.27 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup — —
Shewanella amazonensis SB2B 0.42 Sama_1441 bioD dithiobiotin synthetase (RefSeq) 0.79 Sama_0263 YjgF-like protein (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF674 Dethiobiotin synthetase (EC 6.3.3.3) 0.43 GFF928 Endoribonuclease L-PSP low > 78
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_16455 bioD dethiobiotin synthase 0.64 OKGIIK_12095 ridA reactive intermediate/imine deaminase low > 52
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS07180 dethiobiotin synthase 0.64 LRK54_RS11800 RidA family protein low > 59
Rahnella sp. WP5 0.41 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD 0.43 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase low > 89
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06915 dethiobiotin synthase 0.64 LRK55_RS11525 RidA family protein low > 63
Alteromonas macleodii MIT1002 0.40 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 0.71 MIT1002_00109 Putative reactive intermediate deaminase TdcF 0.73 49
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_0869 dethiobiotin synthase 0.77 B158DRAFT_0573 endoribonuclease L-PSP, putative — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02155 dithiobiotin synthetase 0.29 BPHYT_RS29300 endoribonuclease L-PSP low > 109
Variovorax sp. SCN45 0.36 GFF143 Dethiobiotin synthase BioD (EC 6.3.3.3) 0.32 GFF3442 RidA/YER057c/UK114 superfamily protein low > 127
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS00825 dethiobiotin synthase 0.37 RALBFv3_RS20925 endoribonuclease L-PSP — —
Ralstonia solanacearum UW163 0.35 UW163_RS14160 dethiobiotin synthase 0.37 UW163_RS22060 endoribonuclease L-PSP — —
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02096 dethiobiotin synthetase 0.36 H281DRAFT_01079 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family low > 103
Paraburkholderia graminis OAS925 0.34 ABIE53_000578 dethiobiotin synthetase 0.27 ABIE53_004706 2-iminobutanoate/2-iminopropanoate deaminase low > 113
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS12345 dethiobiotin synthase 0.29 ABZR87_RS05790 RidA family protein low > 80
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.4530.1 Dethiobiotin synthetase (EC 6.3.3.3) 0.61 Xcc-8004.1205.1 hypothetical protein 0.58 44
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS01090 dethiobiotin synthase 0.48 QEN71_RS41190 RidA family protein — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS00935 dethiobiotin synthetase 0.33 RR42_RS16710 endoribonuclease L-PSP — —
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS15275 dethiobiotin synthase 0.46 HMPREF1078_RS02020 RidA family protein low > 61
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_1009 dethiobiotin synthase (RefSeq) 0.34 DvMF_1512 endoribonuclease L-PSP (RefSeq) — —
Synechococcus elongatus PCC 7942 0.15 Synpcc7942_0030 bioD dethiobiotin synthase 0.45 Synpcc7942_0972 YjgF-like protein — —
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS15515 ATP-dependent dethiobiotin synthetase BioD 0.47 HMPREF1181_RS10885 RidA family protein — —
Castellaniella sp019104865 MT123 0.14 ABCV34_RS15285 dethiobiotin synthase 0.55 ABCV34_RS03565 Rid family detoxifying hydrolase — —
Bacteroides ovatus ATCC 8483 0.14 BACOVA_00874 dethiobiotin synthase 0.46 BACOVA_00589 putative endoribonuclease L-PSP low > 94
Pedobacter sp. GW460-11-11-14-LB5 0.14 CA265_RS09760 dethiobiotin synthase 0.45 CA265_RS22825 reactive intermediate/imine deaminase low > 88
Bacteroides thetaiotaomicron VPI-5482 0.13 BT1446 dethiobiotin synthetase (NCBI ptt file) 0.46 BT1336 putative translation initiation inhibitor (NCBI ptt file) 0.43 9
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_02415 dethiobiotin synthase 0.43 CA264_17590 RidA family protein low > 74

Not shown: 10 genomes with orthologs for PP_0366 only; 14 genomes with orthologs for PP_5303 only