| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1598 | | regulatory intramembrane protein RIP zinc protease | 1.0 | PP_4891 | | integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex | 0.32 | 15 |
| Pseudomonas fluorescens SBW25-INTG | 0.83 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.85 | PFLU_RS02585 | | protease modulator HflC | 0.48 | 23 |
| Pseudomonas fluorescens SBW25 | 0.83 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.85 | PFLU_RS02585 | | protease modulator HflC | 0.68 | 28 |
| Pseudomonas simiae WCS417 | 0.83 | PS417_06245 | | zinc metallopeptidase RseP | 0.81 | PS417_02505 | | membane protease HflC | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.82 | AO353_16495 | | zinc metallopeptidase RseP | 0.87 | AO353_13160 | | membrane protease HflC | low | > 101 |
| Pseudomonas sp. RS175 | 0.82 | PFR28_00403 | | Regulator of sigma-E protease RseP | 0.82 | PFR28_05124 | | Modulator of FtsH protease HflC | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.82 | AO356_06005 | | zinc metallopeptidase RseP | 0.86 | AO356_08640 | | membrane protease HflC | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.81 | PfGW456L13_4701 | | Membrane-associated zinc metalloprotease | 0.86 | PfGW456L13_151 | | HflC protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.81 | Pf6N2E2_3062 | | Membrane-associated zinc metalloprotease | 0.86 | Pf6N2E2_3611 | | HflC protein | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.81 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | 0.88 | Psyr_0575 | | protease FtsH subunit HflC | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.81 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | 0.88 | Psyr_0575 | | protease FtsH subunit HflC | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.80 | Pf1N1B4_3091 | | Membrane-associated zinc metalloprotease | 0.87 | Pf1N1B4_1409 | | HflC protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_2835 | | RIP metalloprotease RseP | 0.76 | Psest_0686 | | Membrane protease subunits, stomatin/prohibitin homologs | — | — |
| Pseudomonas sp. S08-1 | 0.78 | OH686_06450 | | RIP metalloprotease RseP | 0.77 | OH686_09455 | | HflC protein | — | — |
| Marinobacter adhaerens HP15 | 0.51 | HP15_1173 | | membrane-associated zinc metalloprotease | 0.55 | HP15_2496 | | HflC | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.44 | MIT1002_01011 | | Regulator of sigma E protease | 0.48 | MIT1002_03785 | | Modulator of FtsH protease HflC | low | > 70 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_3764 | | RIP metalloprotease RseP | 0.36 | EX28DRAFT_3372 | | HflC protein | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_09150 | rseP | sigma E protease regulator RseP | 0.38 | BNILDI_06985 | hflC | protease modulator HflC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03487 | | Regulator of sigma-E protease RseP | 0.38 | OHPLBJKB_03867 | | Modulator of FtsH protease HflC | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF46 | | Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage | 0.38 | GFF828 | | HflC protein | — | — |
| Escherichia coli BL21 | 0.43 | ECD_00174 | | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease | 0.38 | ECD_04042 | | HflB protease modulator specific for phage lambda cII repressor | — | — |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_00860 | | Regulator of sigma-E protease RseP | 0.38 | MPMX20_00456 | | Modulator of FtsH protease HflC | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_08025 | rseP | sigma E protease regulator RseP | 0.38 | NIAGMN_10090 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_08130 | rseP | sigma E protease regulator RseP | 0.38 | HEPCGN_10470 | hflC | protease modulator HflC | — | — |
| Escherichia fergusonii Becca | 0.43 | EFB2_03868 | | Regulator of sigma-E protease RseP | 0.38 | EFB2_04360 | | Modulator of FtsH protease HflC | — | — |
| Escherichia coli BW25113 | 0.43 | b0176 | yaeL | zinc metallopeptidase (NCBI) | 0.38 | b4175 | hflC | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_17980 | rseP | sigma E protease regulator RseP | 0.38 | KEDOAH_15915 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_00690 | rseP | sigma E protease regulator RseP | 0.38 | MCAODC_02755 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_02520 | rseP | sigma E protease regulator RseP | 0.38 | NOLOHH_04505 | hflC | protease modulator HflC | — | — |
| Pantoea sp. MT58 | 0.43 | IAI47_15495 | | sigma E protease regulator RseP | 0.39 | IAI47_02605 | | protease modulator HflC | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_13770 | rseP | sigma E protease regulator RseP | 0.38 | JDDGAC_15880 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_10175 | rseP | sigma E protease regulator RseP | 0.38 | OKFHMN_12240 | hflC | protease modulator HflC | — | — |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS00960 | | sigma E protease regulator RseP | 0.38 | ECOLIN_RS24245 | | protease modulator HflC | — | — |
| Serratia liquefaciens MT49 | 0.42 | IAI46_20225 | | sigma E protease regulator RseP | 0.39 | IAI46_01640 | | protease modulator HflC | — | — |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS19930 | rseP | sigma E protease regulator RseP | 0.38 | LU632_RS02070 | hflC | protease modulator HflC | low | > 74 |
| Shewanella oneidensis MR-1 | 0.42 | SO1636 | | membrane-associated zinc metalloprotease, putative (NCBI ptt file) | 0.46 | SO0606 | hflC | hflC protein (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.42 | Shewana3_2808 | | peptidase RseP (RefSeq) | 0.46 | Shewana3_0600 | | HflC protein (RefSeq) | — | — |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS16300 | | sigma E protease regulator RseP | 0.39 | HER17_RS02600 | | protease modulator HflC | low | > 75 |
| Shewanella loihica PV-4 | 0.41 | Shew_2628 | | putative membrane-associated zinc metalloprotease (RefSeq) | 0.45 | Shew_0569 | | HflC protein (RefSeq) | — | — |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS05250 | | zinc metallopeptidase RseP | 0.38 | BWI76_RS02550 | | protease modulator HflC | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_11475 | | zinc metalloprotease | 0.40 | CSW01_01850 | | protease modulator HflC | — | — |
| Rahnella sp. WP5 | 0.40 | EX31_RS13000 | | sigma E protease regulator RseP | 0.37 | EX31_RS08805 | | protease modulator HflC | — | — |
| Shewanella amazonensis SB2B | 0.40 | Sama_1146 | | membrane-associated zinc metalloprotease, putative (RefSeq) | 0.45 | Sama_3022 | | hflC protein (RefSeq) | low | > 62 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS05490 | | sigma E protease regulator RseP | 0.37 | DZA65_RS19665 | | protease modulator HflC | low | > 75 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS05150 | | sigma E protease regulator RseP | 0.37 | DDA3937_RS18595 | | protease modulator HflC | — | — |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS05150 | | sigma E protease regulator RseP | 0.37 | HGI48_RS18530 | | protease modulator HflC | low | > 71 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS06905 | | RIP metalloprotease RseP | 0.38 | ABIE51_RS06555 | | protease modulator HflC | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.37 | OKGIIK_10175 | rseP | RIP metalloprotease RseP | 0.46 | OKGIIK_06645 | hflC | protease modulator HflC | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.3562.1 | | hypothetical protein | 0.41 | Xcc-8004.3954.1 | | HflC protein | — | — |
| Dechlorosoma suillum PS | 0.36 | Dsui_2687 | | RIP metalloprotease RseP | 0.48 | Dsui_3134 | | membrane protease subunit, stomatin/prohibitin | — | — |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS04075 | | RIP metalloprotease RseP | 0.36 | ABCV34_RS02665 | | protease modulator HflC | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS03290 | | RIP metalloprotease RseP | 0.42 | LRK54_RS00615 | | protease modulator HflC | 0.82 | 32 |
| Rhodanobacter denitrificans MT42 | 0.36 | LRK55_RS03040 | | RIP metalloprotease RseP | 0.42 | LRK55_RS00385 | | protease modulator HflC | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS21620 | | RIP metalloprotease RseP | 0.40 | ABZR86_RS08350 | | protease modulator HflC | — | — |
| Variovorax sp. SCN45 | 0.33 | GFF386 | | Membrane-associated zinc metalloprotease | 0.33 | GFF1003 | | HflC protein | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.33 | HSERO_RS10910 | | peptidase | 0.42 | HSERO_RS14760 | | membrane protein | low | > 78 |
| Kangiella aquimarina DSM 16071 | 0.33 | B158DRAFT_1087 | | site-2 protease. Metallo peptidase. MEROPS family M50B | 0.38 | B158DRAFT_1955 | | HflC protein | low | > 40 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS11840 | | zinc metalloprotease | 0.42 | RR42_RS13100 | | membrane protein | — | — |
| Burkholderia phytofirmans PsJN | 0.32 | BPHYT_RS12105 | | zinc metalloprotease | 0.28 | BPHYT_RS12540 | | membrane protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.32 | H281DRAFT_00617 | | site-2 protease. Metallo peptidase. MEROPS family M50B | 0.32 | H281DRAFT_00524 | | protease FtsH subunit HflC | — | — |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS17135 | | RIP metalloprotease RseP | 0.34 | ABID97_RS14265 | | protease modulator HflC | low | > 91 |
| Paraburkholderia sabiae LMG 24235 | 0.32 | QEN71_RS06455 | | RIP metalloprotease RseP | 0.27 | QEN71_RS06015 | | protease modulator HflC | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_002496 | | regulator of sigma E protease | 0.32 | ABIE53_002734 | | membrane protease subunit HflC | low | > 113 |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS13740 | | RIP metalloprotease RseP | 0.40 | UW163_RS12780 | | protease modulator HflC | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS00410 | | RIP metalloprotease RseP | 0.40 | RALBFv3_RS15315 | | protease modulator HflC | — | — |
| Ralstonia solanacearum GMI1000 | 0.30 | RS_RS07080 | | RIP metalloprotease RseP | 0.40 | RS_RS06125 | | protease modulator HflC | — | — |
| Ralstonia sp. UNC404CL21Col | 0.29 | ABZR87_RS11860 | | RIP metalloprotease RseP | 0.39 | ABZR87_RS10955 | | protease modulator HflC | 0.31 | 59 |
| Ralstonia solanacearum PSI07 | 0.29 | RPSI07_RS17065 | | RIP metalloprotease RseP | 0.41 | RPSI07_RS18060 | | protease modulator HflC | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_425 | | Membrane-associated zinc metalloprotease | 0.35 | Ac3H11_1802 | | HflC protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.25 | GFF4908 | | Membrane-associated zinc metalloprotease | 0.30 | GFF4855 | | HflC protein | 0.66 | 40 |
| Dinoroseobacter shibae DFL-12 | 0.23 | Dshi_1498 | | putative membrane-associated zinc metalloprotease (RefSeq) | 0.34 | Dshi_2735 | | HflC protein (RefSeq) | 0.38 | 12 |
| Phaeobacter inhibens DSM 17395 | 0.20 | PGA1_c14260 | | peptidase M50 | 0.35 | PGA1_c23700 | | protein HflC | low | > 62 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.15 | Echvi_4671 | | RIP metalloprotease RseP | 0.24 | Echvi_2032 | | HflC protein | — | — |
Not shown: 10 genomes with orthologs for PP_1598 only; 12 genomes with orthologs for PP_4891 only