Conservation of cofitness between PP_5227 and PP_4678 in Pseudomonas putida KT2440

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5227 diaminopimelate decarboxylase 1.0 PP_4678 Ketol-acid reductoisomerase 0.46 20
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_12740 diaminopimelate decarboxylase 0.95 AO356_16180 ketol-acid reductoisomerase — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.94 Pf6N2E2_5177 Ketol-acid reductoisomerase (EC 1.1.1.86) — —
Pseudomonas sp. RS175 0.89 PFR28_04375 Diaminopimelate decarboxylase 0.94 PFR28_03697 Ketol-acid reductoisomerase (NADP(+)) — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.95 PfGW456L13_1540 Ketol-acid reductoisomerase (EC 1.1.1.86) 0.93 2
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.95 Pf1N1B4_2880 Ketol-acid reductoisomerase (EC 1.1.1.86) — —
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_0182 diaminopimelate decarboxylase 0.94 Psyr_0848 ketol-acid reductoisomerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_0182 diaminopimelate decarboxylase 0.94 Psyr_0848 ketol-acid reductoisomerase — —
Pseudomonas simiae WCS417 0.87 PS417_27580 diaminopimelate decarboxylase 0.94 PS417_23800 ketol-acid reductoisomerase — —
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_09035 diaminopimelate decarboxylase 0.95 AO353_14505 ketol-acid reductoisomerase — —
Pseudomonas fluorescens SBW25 0.86 PFLU_RS29265 diaminopimelate decarboxylase 0.94 PFLU_RS25640 ketol-acid reductoisomerase low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS29265 diaminopimelate decarboxylase 0.94 PFLU_RS25640 ketol-acid reductoisomerase — —
Pseudomonas stutzeri RCH2 0.82 Psest_3764 diaminopimelate decarboxylase 0.92 Psest_1038 ketol-acid reductoisomerase — —
Pseudomonas sp. S08-1 0.81 OH686_13800 diaminopimelate decarboxylase 0.96 OH686_08115 ketol-acid reductoisomerase low > 80
Marinobacter adhaerens HP15 0.72 HP15_247 diaminopimelate decarboxylase 0.83 HP15_533 ketol-acid reductoisomerase — —
Dechlorosoma suillum PS 0.64 Dsui_1182 diaminopimelate decarboxylase 0.78 Dsui_3527 ketol-acid reductoisomerase — —
Acinetobacter radioresistens SK82 0.61 MPMX26_02232 Diaminopimelate decarboxylase 0.85 MPMX26_00474 Ketol-acid reductoisomerase (NADP(+)) 0.84 14
Paraburkholderia sabiae LMG 24235 0.61 QEN71_RS28080 diaminopimelate decarboxylase 0.69 QEN71_RS24215 ketol-acid reductoisomerase 0.96 3
Ralstonia solanacearum GMI1000 0.59 RS_RS14930 diaminopimelate decarboxylase 0.71 RS_RS10410 ketol-acid reductoisomerase — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS06990 diaminopimelate decarboxylase 0.71 RALBFv3_RS03040 ketol-acid reductoisomerase — —
Ralstonia solanacearum UW163 0.59 UW163_RS06625 diaminopimelate decarboxylase 0.71 UW163_RS10685 ketol-acid reductoisomerase — —
Paraburkholderia graminis OAS925 0.59 ABIE53_003749 diaminopimelate decarboxylase 0.69 ABIE53_001576 ketol-acid reductoisomerase — —
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS17930 diaminopimelate decarboxylase 0.70 BPHYT_RS06555 ketol-acid reductoisomerase low > 109
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS02640 diaminopimelate decarboxylase 0.72 ABZR87_RS14945 ketol-acid reductoisomerase — —
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_05606 diaminopimelate decarboxylase 0.69 H281DRAFT_04553 ketol-acid reductoisomerase — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS10250 diaminopimelate decarboxylase 0.71 RPSI07_RS14265 ketol-acid reductoisomerase — —
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS00950 diaminopimelate decarboxylase 0.74 HSERO_RS19010 ketol-acid reductoisomerase — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS12685 diaminopimelate decarboxylase 0.73 ABCV34_RS01220 ketol-acid reductoisomerase — —
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_0353 diaminopimelate decarboxylase (RefSeq) 0.58 DvMF_0155 ketol-acid reductoisomerase (RefSeq) low > 51
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS19050 diaminopimelate decarboxylase 0.72 RR42_RS05445 ketol-acid reductoisomerase — —
Variovorax sp. SCN45 0.53 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.73 GFF1161 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.78 GFF4278 Ketol-acid reductoisomerase (EC 1.1.1.86) — —
Desulfovibrio vulgaris Hildenborough JW710 0.52 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) 0.57 DVU1378 ilvC ketol-acid reductoisomerase (TIGR) low > 55
Variovorax sp. OAS795 0.51 ABID97_RS23305 diaminopimelate decarboxylase 0.73 ABID97_RS14895 ketol-acid reductoisomerase — —
Azospirillum sp. SherDot2 0.49 MPMX19_05819 Diaminopimelate decarboxylase 0.67 MPMX19_01774 Ketol-acid reductoisomerase (NADP(+)) — —
Azospirillum brasilense Sp245 0.49 AZOBR_RS16945 diaminopimelate decarboxylase 0.66 AZOBR_RS06570 ketol-acid reductoisomerase — —
Agrobacterium fabrum C58 0.47 Atu3601 diaminopimelate decarboxylase 0.62 Atu2019 ketol-acid reductoisomerase — —
Rhodopseudomonas palustris CGA009 0.47 TX73_024635 diaminopimelate decarboxylase 0.66 TX73_010485 ketol-acid reductoisomerase — —
Sinorhizobium meliloti 1021 0.46 SMc00723 diaminopimelate DAP decarboxylase 0.65 SMc04346 ketol-acid reductoisomerase — —
Phaeobacter inhibens DSM 17395 0.46 PGA1_c03470 diaminopimelate decarboxylase LysA 0.63 PGA1_c06580 ketol-acid reductoisomerase IlvC — —
Dinoroseobacter shibae DFL-12 0.46 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.62 Dshi_2396 ketol-acid reductoisomerase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.46 AMB_RS22725 diaminopimelate decarboxylase 0.66 AMB_RS17750 ketol-acid reductoisomerase — —
Rhizobium sp. OAE497 0.45 ABIE40_RS17530 diaminopimelate decarboxylase 0.63 ABIE40_RS11360 ketol-acid reductoisomerase — —
Rhodospirillum rubrum S1H 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.67 Rru_A0469 Ketol-acid reductoisomerase (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_02296 diaminopimelate decarboxylase 0.66 CCNA_02204 ketol-acid reductoisomerase/2-dehydropantoate 2-reductase — —
Caulobacter crescentus NA1000 0.42 CCNA_02296 diaminopimelate decarboxylase 0.66 CCNA_02204 ketol-acid reductoisomerase/2-dehydropantoate 2-reductase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS12545 diaminopimelate decarboxylase 0.48 A4249_RS10025 ketol-acid reductoisomerase 0.98 46
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS11485 diaminopimelate decarboxylase 0.53 LRK54_RS10315 ketol-acid reductoisomerase low > 59
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS12130 diaminopimelate decarboxylase 0.52 ABZR86_RS15940 ketol-acid reductoisomerase low > 74
Rhodanobacter denitrificans MT42 0.40 LRK55_RS11215 diaminopimelate decarboxylase 0.53 LRK55_RS09955 ketol-acid reductoisomerase low > 63
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.65 Ga0059261_0066 ketol-acid reductoisomerase (EC 1.1.1.86) — —
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.52 OKGIIK_13605 ilvC ketol-acid reductoisomerase low > 52
Lysobacter sp. OAE881 0.39 ABIE51_RS13675 diaminopimelate decarboxylase 0.52 ABIE51_RS17545 ketol-acid reductoisomerase low > 62
Methanococcus maripaludis JJ 0.36 MMJJ_RS08170 diaminopimelate decarboxylase 0.50 MMJJ_RS01620 ketol-acid reductoisomerase — —
Methanococcus maripaludis S2 0.36 MMP_RS06180 diaminopimelate decarboxylase 0.50 MMP_RS03435 ketol-acid reductoisomerase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS10180 diaminopimelate decarboxylase 0.21 ABZR88_RS11590 ketol-acid reductoisomerase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.22 Echvi_2058 ketol-acid reductoisomerase 0.90 22
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_0262 lysA diaminopimelate decarboxylase 0.61 Synpcc7942_1552 ilvC ketol-acid reductoisomerase — —
Mycobacterium tuberculosis H37Rv 0.21 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.55 Rv3001c Probable KETOL-acid reductoisomerase IlvC (acetohydroxy-acid isomeroreductase) (alpha-keto-beta-hydroxylacil reductoisomerase) — —

Not shown: 19 genomes with orthologs for PP_5227 only; 3 genomes with orthologs for PP_4678 only