Conservation of cofitness between PP_2214 and PP_2217 in Pseudomonas putida KT2440

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2214 3-hydroxyacyl-CoA dehydrogenase type-2 1.0 PP_2217 enoyl-CoA hydratase 0.50 3
Pseudomonas fluorescens SBW25 0.80 PFLU_RS14760 SDR family NAD(P)-dependent oxidoreductase 0.85 PFLU_RS14775 enoyl-CoA hydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS14760 SDR family NAD(P)-dependent oxidoreductase 0.85 PFLU_RS14775 enoyl-CoA hydratase 0.39 11
Pseudomonas sp. RS175 0.76 PFR28_01881 putative oxidoreductase 0.85 PFR28_01884 putative enoyl-CoA hydratase echA8 0.39 16
Pseudomonas simiae WCS417 0.75 PS417_13860 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.86 PS417_13845 enoyl-CoA hydratase — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2981 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.86 PfGW456L13_2984 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) low > 87
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_1144 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.86 Pf6N2E2_1147 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_25690 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.85 AO353_25675 enoyl-CoA hydratase — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_26345 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.86 AO356_26360 enoyl-CoA hydratase 0.33 21
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_4785 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.86 Pf1N1B4_4788 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) — —
Pseudomonas stutzeri RCH2 0.68 Psest_2447 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.79 Psest_2437 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) 0.23 18
Pseudomonas sp. S08-1 0.67 OH686_00865 3-hydroxyacyl-CoA dehydrogenase or 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.25 OH686_05875 Enoyl-CoA hydratase low > 80
Rhodospirillum rubrum S1H 0.66 Rru_A1507 short-chain dehydrogenase/reductase SDR (NCBI) 0.67 Rru_A3801 Enoyl-CoA hydratase/isomerase (NCBI) low > 58
Dechlorosoma suillum PS 0.66 Dsui_1624 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein 0.64 Dsui_1378 enoyl-CoA hydratase/carnithine racemase low > 51
Sinorhizobium meliloti 1021 0.65 SMa1452 hypothetical protein 0.66 SMc01153 enoyl-CoA hydratase low > 103
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_06131 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family 0.62 H281DRAFT_05725 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) low > 103
Rhodopseudomonas palustris CGA009 0.65 TX73_011910 3-hydroxyacyl-CoA dehydrogenase 0.57 TX73_009315 enoyl-CoA hydratase low > 86
Paraburkholderia graminis OAS925 0.64 ABIE53_005415 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) 0.60 ABIE53_003629 enoyl-CoA hydratase low > 113
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS00745 3-hydroxyacyl-CoA dehydrogenase 0.62 ABZR87_RS02095 enoyl-CoA hydratase low > 80
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS15890 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.62 BPHYT_RS17335 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) low > 109
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS04630 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.57 HSERO_RS19405 enoyl-CoA hydratase low > 78
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS05095 3-hydroxyacyl-CoA dehydrogenase 0.62 RALBFv3_RS06440 enoyl-CoA hydratase low > 76
Ralstonia solanacearum GMI1000 0.61 RS_RS12705 3-hydroxyacyl-CoA dehydrogenase 0.63 RS_RS14385 enoyl-CoA hydratase low > 80
Ralstonia solanacearum UW163 0.61 UW163_RS08530 3-hydroxyacyl-CoA dehydrogenase 0.62 UW163_RS07185 enoyl-CoA hydratase — —
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS02810 3-hydroxyacyl-CoA dehydrogenase 0.63 QEN71_RS27495 enoyl-CoA hydratase low > 153
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2606 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.61 Ac3H11_4006 Enoyl-CoA hydratase (EC 4.2.1.17) 0.63 7
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3825 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.60 GFF619 Enoyl-CoA hydratase (EC 4.2.1.17) 0.68 2
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS03440 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.61 RR42_RS18250 enoyl-CoA hydratase low > 128
Ralstonia solanacearum PSI07 0.58 RPSI07_RS12200 3-hydroxyacyl-CoA dehydrogenase 0.62 RPSI07_RS10800 enoyl-CoA hydratase low > 81
Variovorax sp. OAS795 0.58 ABID97_RS10560 3-hydroxyacyl-CoA dehydrogenase 0.57 ABID97_RS26735 enoyl-CoA hydratase — —
Azospirillum sp. SherDot2 0.56 MPMX19_02389 putative oxidoreductase 0.66 MPMX19_02766 putative enoyl-CoA hydratase echA8 low > 112
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS08630 SDR family NAD(P)-dependent oxidoreductase 0.36 ABZR86_RS00870 enoyl-CoA hydratase-related protein — —
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_09370 fabG 3-hydroxyacyl-CoA dehydrogenase 0.33 OKGIIK_03935 Enoyl-CoA hydratase low > 52
Azospirillum brasilense Sp245 0.54 AZOBR_RS26110 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.65 AZOBR_RS01260 enoyl-CoA hydratase — —
Acinetobacter radioresistens SK82 0.54 MPMX26_01177 putative oxidoreductase 0.72 MPMX26_01546 putative enoyl-CoA hydratase echA8 — —
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02080 SDR family oxidoreductase 0.35 LRK55_RS14880 enoyl-CoA hydratase-related protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS02325 SDR family oxidoreductase 0.35 LRK54_RS15165 enoyl-CoA hydratase-related protein low > 59
Castellaniella sp019104865 MT123 0.54 ABCV34_RS05365 3-hydroxyacyl-CoA dehydrogenase 0.62 ABCV34_RS10435 enoyl-CoA hydratase — —
Lysobacter sp. OAE881 0.53 ABIE51_RS13215 SDR family NAD(P)-dependent oxidoreductase 0.35 ABIE51_RS07570 enoyl-CoA hydratase-related protein — —
Agrobacterium fabrum C58 0.52 Atu1415 3-hydroxyacyl-CoA dehydrogenase type II 0.63 Atu0322 enoyl CoA hydratase low > 89
Magnetospirillum magneticum AMB-1 0.51 AMB_RS18130 KR domain-containing protein 0.69 AMB_RS03265 enoyl-CoA hydratase low > 64
Mycobacterium tuberculosis H37Rv 0.50 Rv1144 Probable short-chain type dehydrogenase/reductase 0.65 Rv1070c Probable enoyl-CoA hydratase EchA8 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase) low > 58
Dinoroseobacter shibae DFL-12 0.50 Dshi_1700 short-chain dehydrogenase/reductase SDR (RefSeq) 0.65 Dshi_3370 Enoyl-CoA hydratase/isomerase (RefSeq) — —
Variovorax sp. SCN45 0.49 GFF2281 Short-chain dehydrogenase/reductase SDR 0.54 GFF2128 Enoyl-CoA hydratase (EC 4.2.1.17) low > 127
Phaeobacter inhibens DSM 17395 0.49 PGA1_c11320 3-hydroxyacyl-CoA dehydrogenase type-2 0.64 PGA1_c36500 enoyl-CoA hydratase/isomerase — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.2924.1 Short-chain dehydrogenase/reductase SDR 0.35 Xcc-8004.3347.1 Enoyl-CoA hydratase (EC 4.2.1.17) — —
Bosea sp. OAE506 0.46 ABIE41_RS04860 SDR family NAD(P)-dependent oxidoreductase 0.78 ABIE41_RS04195 enoyl-CoA hydratase low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.44 A4249_RS12825 SDR family oxidoreductase 0.59 A4249_RS14515 enoyl-CoA hydratase-related protein low > 48
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_00123 3-hydroxyacyl CoA dehydrogenase 0.57 CCNA_00006 enoyl-CoA hydratase low > 67
Caulobacter crescentus NA1000 0.40 CCNA_00123 3-hydroxyacyl CoA dehydrogenase 0.57 CCNA_00006 enoyl-CoA hydratase low > 66
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_2816 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.66 Ga0059261_3685 Enoyl-CoA hydratase/carnithine racemase low > 68
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4075 Short-chain dehydrogenase/reductase SDR 0.80 Psyr_3030 short chain enoyl-CoA hydratase low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4075 Short-chain dehydrogenase/reductase SDR 0.80 Psyr_3030 short chain enoyl-CoA hydratase — —
Shewanella loihica PV-4 0.29 Shew_1673 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.27 Shew_2672 carnitinyl-CoA dehydratase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.29 Sama_1381 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.23 Sama_1378 enoyl-CoA hydratase (RefSeq) low > 62
Shewanella sp. ANA-3 0.28 Shewana3_2765 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.23 Shewana3_2768 enoyl-CoA hydratase (RefSeq) — —
Shewanella oneidensis MR-1 0.27 SO1683 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data) 0.23 SO1680 enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) low > 76

Not shown: 3 genomes with orthologs for PP_2214 only; 22 genomes with orthologs for PP_2217 only