Conservation of cofitness between PP_4002 and PP_1527 in Pseudomonas putida KT2440

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4002 DNA-dependent ATPase required for recombination 1.0 PP_1527 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) 0.24 20
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_27640 recombination factor protein RarA 0.81 AO353_16420 thiamine biosynthesis protein ThiF low > 101
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.81 Pf1N1B4_3074 HesA/MoeB/ThiF family protein related to EC-YgdL low > 87
Pseudomonas sp. RS175 0.92 PFR28_02606 Replication-associated recombination protein A 0.81 PFR28_00387 tRNA threonylcarbamoyladenosine dehydratase low > 88
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_22185 recombination factor protein RarA 0.81 AO356_06085 thiamine biosynthesis protein ThiF low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.81 Pf6N2E2_3081 HesA/MoeB/ThiF family protein related to EC-YgdL low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.81 PfGW456L13_4719 HesA/MoeB/ThiF family protein related to EC-YgdL low > 87
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3177 Recombination protein MgsA 0.77 Psyr_1333 UBA/THIF-type NAD/FAD binding fold protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3177 Recombination protein MgsA 0.77 Psyr_1333 UBA/THIF-type NAD/FAD binding fold protein low > 86
Pseudomonas simiae WCS417 0.91 PS417_16480 recombination factor protein RarA 0.81 PS417_06165 thiamine biosynthesis protein ThiF low > 88
Pseudomonas fluorescens SBW25 0.91 PFLU_RS18520 replication-associated recombination protein A 0.82 PFLU_RS06230 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS18520 replication-associated recombination protein A 0.82 PFLU_RS06230 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 109
Pseudomonas sp. S08-1 0.88 OH686_00270 Replication-associated recombination protein RarA 0.75 OH686_06545 HesA/MoeB/ThiF family protein low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.76 Psest_1619 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 low > 67
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.44 B158DRAFT_0922 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 low > 40
Marinobacter adhaerens HP15 0.64 HP15_1817 recombination factor protein RarA 0.56 HP15_266 UBA/THIF-type NAD/FAD binding protein low > 73
Rahnella sp. WP5 0.60 EX31_RS18515 replication-associated recombination protein A 0.55 EX31_RS13130 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 89
Klebsiella michiganensis M5al 0.60 BWI76_RS09670 recombination factor protein RarA 0.53 BWI76_RS22975 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 92
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.54 EX28DRAFT_2888 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 low > 76
Shewanella sp. ANA-3 0.59 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.56 Shewana3_0735 UBA/THIF-type NAD/FAD binding protein (RefSeq) low > 73
Serratia liquefaciens MT49 0.59 IAI46_08570 replication-associated recombination protein A 0.56 IAI46_20360 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 86
Shewanella loihica PV-4 0.59 Shew_2022 recombination factor protein RarA (RefSeq) 0.54 Shew_3251 UBA/THIF-type NAD/FAD binding protein (RefSeq) low > 60
Enterobacter sp. TBS_079 0.59 MPMX20_01554 Replication-associated recombination protein A 0.54 MPMX20_03675 tRNA threonylcarbamoyladenosine dehydratase low > 85
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_05630 replication-associated recombination protein A 0.54 CSW01_11750 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4896 FIG065221: Holliday junction DNA helicase 0.56 GFF4870 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway low > 78
Erwinia tracheiphila SCR3 0.59 LU632_RS09755 replication-associated recombination protein A 0.56 LU632_RS06230 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 74
Shewanella oneidensis MR-1 0.59 SO2308 ATPase, AAA family (NCBI ptt file) 0.54 SO3895 HesA/MoeB/ThiF family protein (NCBI ptt file) low > 76
Escherichia fergusonii Becca 0.59 EFB2_03169 Replication-associated recombination protein A 0.56 EFB2_01105 tRNA threonylcarbamoyladenosine dehydratase low > 86
Escherichia coli BW25113 0.59 b0892 ycaJ recombination protein (NCBI) 0.56 b2812 ygdL hypothetical protein (NCBI) low > 76
Escherichia coli ECOR38 0.59 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.56 HEPCGN_19350 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 85
Escherichia coli ECRC102 0.59 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.55 NIAGMN_17865 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS04355 recombination factor protein RarA 0.42 RR42_RS15305 heme biosynthesis protein HemY low > 128
Escherichia coli ECRC99 0.59 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.55 KEDOAH_08035 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA — —
Escherichia coli Nissle 1917 0.59 ECOLIN_RS04745 replication-associated recombination protein RarA 0.56 ECOLIN_RS15670 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 52
Escherichia coli ECRC98 0.59 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.55 JDDGAC_23760 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_02776 Replication-associated recombination protein A 0.56 OHPLBJKB_00919 tRNA threonylcarbamoyladenosine dehydratase low > 73
Escherichia coli ECRC101 0.59 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.55 OKFHMN_20095 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA — —
Escherichia coli ECOR27 0.59 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.56 NOLOHH_11975 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 57
Escherichia coli ECRC101 0.59 MCAODC_24950 rarA replication-associated recombination protein RarA 0.55 MCAODC_10620 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA — —
Escherichia coli BL21 0.59 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.56 ECD_02663 tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA low > 60
Escherichia coli ECRC62 0.59 BNILDI_20385 rarA replication-associated recombination protein RarA 0.56 BNILDI_10480 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA — —
Pantoea sp. MT58 0.59 IAI47_12900 replication-associated recombination protein A 0.56 IAI47_04005 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 76
Dickeya dadantii 3937 0.58 DDA3937_RS09605 replication-associated recombination protein A 0.55 DDA3937_RS05030 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 74
Dickeya dianthicola ME23 0.58 DZA65_RS09930 replication-associated recombination protein A 0.54 DZA65_RS05375 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS09620 replication-associated recombination protein A 0.54 HGI48_RS05035 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 71
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS03415 replication-associated recombination protein A 0.42 QEN71_RS02715 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 153
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS16030 replication-associated recombination protein A 0.43 ABZR87_RS09175 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 80
Pectobacterium carotovorum WPP14 0.58 HER17_RS12345 replication-associated recombination protein A 0.56 HER17_RS16435 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 75
Paraburkholderia graminis OAS925 0.58 ABIE53_001292 putative ATPase 0.45 ABIE53_003371 tRNA A37 threonylcarbamoyladenosine dehydratase low > 113
Shewanella amazonensis SB2B 0.58 Sama_1774 recombination factor protein RarA (RefSeq) 0.57 Sama_0546 HesA/MoeB/ThiF family protein (RefSeq) low > 62
Ralstonia solanacearum PSI07 0.58 RPSI07_RS13205 replication-associated recombination protein A 0.38 RPSI07_RS20115 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 81
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS05100 ATPase AAA 0.44 BPHYT_RS15990 heme biosynthesis protein HemY low > 109
Ralstonia solanacearum UW163 0.57 UW163_RS09525 replication-associated recombination protein A 0.39 UW163_RS00465 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS04145 replication-associated recombination protein A 0.39 RALBFv3_RS13100 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 76
Dechlorosoma suillum PS 0.56 Dsui_1694 AAA ATPase 0.40 Dsui_1346 dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis low > 51
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_00180 Recombination protein MgsA 0.44 H281DRAFT_04134 tRNA A37 threonylcarbamoyladenosine dehydratase low > 103
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS09515 ATPase AAA 0.40 HSERO_RS06230 heme biosynthesis protein HemY low > 78
Ralstonia solanacearum GMI1000 0.56 RS_RS11735 replication-associated recombination protein A 0.42 RS_RS03895 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA low > 80
Castellaniella sp019104865 MT123 0.55 ABCV34_RS07220 replication-associated recombination protein A 0.28 ABCV34_RS00665 tRNA threonylcarbamoyladenosine dehydratase — —
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase 0.40 Xcc-8004.3494.1 Molybdopterin biosynthesis protein MoeB low > 74
Alteromonas macleodii MIT1002 0.54 MIT1002_02178 Replication-associated recombination protein A 0.55 MIT1002_01936 Molybdopterin-synthase adenylyltransferase low > 70
Variovorax sp. SCN45 0.54 GFF6034 Replication-associated recombination protein RarA 0.29 GFF289 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 low > 127
Variovorax sp. OAS795 0.54 ABID97_RS07835 replication-associated recombination protein A 0.35 ABID97_RS16680 tRNA threonylcarbamoyladenosine dehydratase low > 91
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.36 Ac3H11_2482 Probable HesA/MoeB/ThiF family protein low > 79
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_07580 rarA recombination factor protein RarA 0.44 OKGIIK_03630 tcdA tRNA A37 threonylcarbamoyladenosine dehydratase low > 52
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS17320 replication-associated recombination protein A 0.46 LRK54_RS14805 tRNA threonylcarbamoyladenosine dehydratase low > 59
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS01825 replication-associated recombination protein A 0.48 ABZR86_RS00565 ThiF family adenylyltransferase low > 74
Rhodanobacter denitrificans MT42 0.53 LRK55_RS17545 replication-associated recombination protein A 0.46 LRK55_RS14520 tRNA threonylcarbamoyladenosine dehydratase low > 63
Lysobacter sp. OAE881 0.52 ABIE51_RS11445 replication-associated recombination protein A 0.45 ABIE51_RS12585 tRNA threonylcarbamoyladenosine dehydratase low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF777 FIG065221: Holliday junction DNA helicase 0.30 GFF4538 Probable HesA/MoeB/ThiF family protein low > 90
Bacteroides ovatus ATCC 8483 0.43 BACOVA_03971 ATPase, AAA family 0.21 BACOVA_03472 ThiF family protein low > 94
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS16975 replication-associated recombination protein A 0.21 HMPREF1181_RS03125 tRNA threonylcarbamoyladenosine dehydratase low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS22400 AAA family ATPase 0.27 CA265_RS18820 tRNA threonylcarbamoyladenosine dehydratase low > 88
Parabacteroides merdae CL09T00C40 0.42 HMPREF1078_RS15395 replication-associated recombination protein A 0.23 HMPREF1078_RS06980 tRNA threonylcarbamoyladenosine dehydratase low > 61
Acinetobacter radioresistens SK82 0.40 MPMX26_02987 Replication-associated recombination protein A 0.38 MPMX26_00481 tRNA threonylcarbamoyladenosine dehydratase low > 36
Fusobacterium nucleatum SB010 0.33 HUW76_02735 replication-associated recombination protein A 0.22 HUW76_04475 tRNA threonylcarbamoyladenosine dehydratase 0.93 9

Not shown: 24 genomes with orthologs for PP_4002 only; 0 genomes with orthologs for PP_1527 only