| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1598 | | regulatory intramembrane protein RIP zinc protease | 1.0 | PP_0949 | | putative ATP-binding protein UPF0042 | 0.35 | 9 |
| Pseudomonas fluorescens SBW25-INTG | 0.83 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.89 | PFLU_RS04385 | | RNase adapter RapZ | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.83 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.89 | PFLU_RS04385 | | RNase adapter RapZ | low | > 109 |
| Pseudomonas simiae WCS417 | 0.83 | PS417_06245 | | zinc metallopeptidase RseP | 0.89 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.82 | AO353_16495 | | zinc metallopeptidase RseP | 0.90 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | low | > 101 |
| Pseudomonas sp. RS175 | 0.82 | PFR28_00403 | | Regulator of sigma-E protease RseP | 0.90 | PFR28_00170 | | RNase adapter protein RapZ | 0.42 | 21 |
| Pseudomonas fluorescens FW300-N2C3 | 0.82 | AO356_06005 | | zinc metallopeptidase RseP | 0.92 | AO356_07050 | | glmZ(sRNA)-inactivating NTPase | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.81 | PfGW456L13_4701 | | Membrane-associated zinc metalloprotease | 0.92 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.81 | Pf6N2E2_3062 | | Membrane-associated zinc metalloprotease | 0.91 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.81 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | 0.87 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.81 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | 0.87 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.80 | Pf1N1B4_3091 | | Membrane-associated zinc metalloprotease | 0.90 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_2835 | | RIP metalloprotease RseP | 0.84 | Psest_3316 | | Predicted P-loop-containing kinase | — | — |
| Pseudomonas sp. S08-1 | 0.78 | OH686_06450 | | RIP metalloprotease RseP | 0.85 | OH686_08560 | | RNase adapter protein RapZ | — | — |
| Marinobacter adhaerens HP15 | 0.51 | HP15_1173 | | membrane-associated zinc metalloprotease | 0.55 | HP15_2445 | | protein yhbJ | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.44 | MIT1002_01011 | | Regulator of sigma E protease | 0.48 | MIT1002_00824 | | glmZ(sRNA)-inactivating NTPase | low | > 70 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_3764 | | RIP metalloprotease RseP | 0.47 | EX28DRAFT_3259 | | Predicted P-loop-containing kinase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03487 | | Regulator of sigma-E protease RseP | 0.47 | OHPLBJKB_00495 | | RNase adapter protein RapZ | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_09150 | rseP | sigma E protease regulator RseP | 0.47 | BNILDI_01810 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_13770 | rseP | sigma E protease regulator RseP | 0.47 | JDDGAC_21550 | rapZ | RNase adapter RapZ | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF46 | | Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage | 0.47 | GFF2949 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Escherichia fergusonii Becca | 0.43 | EFB2_03868 | | Regulator of sigma-E protease RseP | 0.47 | EFB2_00618 | | RNase adapter protein RapZ | — | — |
| Escherichia coli BL21 | 0.43 | ECD_00174 | | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease | 0.47 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | — | — |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_10175 | rseP | sigma E protease regulator RseP | 0.47 | OKFHMN_17925 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_02520 | rseP | sigma E protease regulator RseP | 0.47 | NOLOHH_09725 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli BW25113 | 0.43 | b0176 | yaeL | zinc metallopeptidase (NCBI) | 0.47 | b3205 | yhbJ | hypothetical protein (NCBI) | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_00690 | rseP | sigma E protease regulator RseP | 0.47 | MCAODC_08445 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_08130 | rseP | sigma E protease regulator RseP | 0.47 | HEPCGN_16800 | rapZ | RNase adapter RapZ | — | — |
| Pantoea sp. MT58 | 0.43 | IAI47_15495 | | sigma E protease regulator RseP | 0.47 | IAI47_17200 | | RNase adapter RapZ | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_17980 | rseP | sigma E protease regulator RseP | 0.47 | KEDOAH_10225 | rapZ | RNase adapter RapZ | — | — |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_00860 | | Regulator of sigma-E protease RseP | 0.47 | MPMX20_04111 | | RNase adapter protein RapZ | — | — |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS00960 | | sigma E protease regulator RseP | 0.47 | ECOLIN_RS18440 | | RNase adapter RapZ | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_08025 | rseP | sigma E protease regulator RseP | 0.47 | NIAGMN_15685 | rapZ | RNase adapter RapZ | — | — |
| Serratia liquefaciens MT49 | 0.42 | IAI46_20225 | | sigma E protease regulator RseP | 0.48 | IAI46_22485 | | RNase adapter RapZ | — | — |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS19930 | rseP | sigma E protease regulator RseP | 0.47 | LU632_RS21295 | rapZ | RNase adapter RapZ | low | > 74 |
| Shewanella oneidensis MR-1 | 0.42 | SO1636 | | membrane-associated zinc metalloprotease, putative (NCBI ptt file) | 0.46 | SO3964 | | conserved hypothetical protein (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.42 | Shewana3_2808 | | peptidase RseP (RefSeq) | 0.46 | Shewana3_0669 | | hypothetical protein (RefSeq) | — | — |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS16300 | | sigma E protease regulator RseP | 0.47 | HER17_RS20075 | | RNase adapter RapZ | low | > 75 |
| Shewanella loihica PV-4 | 0.41 | Shew_2628 | | putative membrane-associated zinc metalloprotease (RefSeq) | 0.47 | Shew_3314 | | hypothetical protein (RefSeq) | — | — |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS05250 | | zinc metallopeptidase RseP | 0.47 | BWI76_RS25280 | | RNase adaptor protein RapZ | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_11475 | | zinc metalloprotease | 0.46 | CSW01_12830 | | RNase adaptor protein RapZ | — | — |
| Shewanella amazonensis SB2B | 0.40 | Sama_1146 | | membrane-associated zinc metalloprotease, putative (RefSeq) | 0.46 | Sama_3091 | | hypothetical protein (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.40 | EX31_RS13000 | | sigma E protease regulator RseP | 0.47 | EX31_RS12385 | | RNase adapter RapZ | — | — |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS05490 | | sigma E protease regulator RseP | 0.47 | DZA65_RS01495 | | RNase adapter RapZ | low | > 75 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS05150 | | sigma E protease regulator RseP | 0.47 | DDA3937_RS01515 | | RNase adapter RapZ | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_01300 | | Regulator of sigma-E protease RseP | 0.41 | MPMX26_00547 | | RNase adapter protein RapZ | low | > 36 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS05150 | | sigma E protease regulator RseP | 0.47 | HGI48_RS01430 | | RNase adapter RapZ | low | > 71 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS06905 | | RIP metalloprotease RseP | 0.44 | ABIE51_RS15975 | | RNase adapter RapZ | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.37 | OKGIIK_10175 | rseP | RIP metalloprotease RseP | 0.45 | OKGIIK_02250 | rapZ | RNase adapter RapZ | 0.77 | 19 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.3562.1 | | hypothetical protein | 0.40 | Xcc-8004.1658.1 | | hypothetical protein | — | — |
| Dechlorosoma suillum PS | 0.36 | Dsui_2687 | | RIP metalloprotease RseP | 0.44 | Dsui_0990 | | putative P-loop-containing kinase | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS04075 | | RIP metalloprotease RseP | 0.39 | ABCV34_RS14330 | | RNase adapter RapZ | low | > 48 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS03290 | | RIP metalloprotease RseP | 0.44 | LRK54_RS12860 | | RNase adapter RapZ | 0.89 | 15 |
| Rhodanobacter denitrificans MT42 | 0.36 | LRK55_RS03040 | | RIP metalloprotease RseP | 0.44 | LRK55_RS12560 | | RNase adapter RapZ | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS21620 | | RIP metalloprotease RseP | 0.45 | ABZR86_RS19800 | | RNase adapter RapZ | — | — |
| Variovorax sp. SCN45 | 0.33 | GFF386 | | Membrane-associated zinc metalloprotease | 0.39 | GFF2356 | | RNase adapter protein RapZ | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.33 | HSERO_RS10910 | | peptidase | 0.40 | HSERO_RS19535 | | nucleotide-binding protein | low | > 78 |
| Kangiella aquimarina DSM 16071 | 0.33 | B158DRAFT_1087 | | site-2 protease. Metallo peptidase. MEROPS family M50B | 0.44 | B158DRAFT_2077 | | Predicted P-loop-containing kinase | low | > 40 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS11840 | | zinc metalloprotease | 0.42 | RR42_RS02060 | | nucleotide-binding protein | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.32 | BPHYT_RS12105 | | zinc metalloprotease | 0.46 | BPHYT_RS02885 | | glmZ(sRNA)-inactivating NTPase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.32 | H281DRAFT_00617 | | site-2 protease. Metallo peptidase. MEROPS family M50B | 0.45 | H281DRAFT_01931 | | UPF0042 nucleotide-binding protein | — | — |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS17135 | | RIP metalloprotease RseP | 0.39 | ABID97_RS23710 | | RNase adapter RapZ | low | > 91 |
| Paraburkholderia sabiae LMG 24235 | 0.32 | QEN71_RS06455 | | RIP metalloprotease RseP | 0.46 | QEN71_RS01735 | | RNase adapter RapZ | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_002496 | | regulator of sigma E protease | 0.44 | ABIE53_000714 | | UPF0042 nucleotide-binding protein | 0.68 | 5 |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS13740 | | RIP metalloprotease RseP | 0.45 | UW163_RS02435 | | RNase adapter RapZ | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS00410 | | RIP metalloprotease RseP | 0.45 | RALBFv3_RS11145 | | RNase adapter RapZ | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.30 | RS_RS07080 | | RIP metalloprotease RseP | 0.44 | RS_RS01995 | | RNase adaptor protein RapZ | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.29 | ABZR87_RS11860 | | RIP metalloprotease RseP | 0.44 | ABZR87_RS07035 | | RNase adapter RapZ | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.29 | RPSI07_RS17065 | | RIP metalloprotease RseP | 0.44 | RPSI07_RS22155 | | RNase adapter RapZ | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_425 | | Membrane-associated zinc metalloprotease | 0.40 | Ac3H11_3459 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.25 | GFF4908 | | Membrane-associated zinc metalloprotease | 0.39 | GFF828 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.66 | 37 |
| Dinoroseobacter shibae DFL-12 | 0.23 | Dshi_1498 | | putative membrane-associated zinc metalloprotease (RefSeq) | 0.32 | Dshi_0209 | | hypothetical protein (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.20 | PGA1_c14260 | | peptidase M50 | 0.35 | PGA1_c01180 | | Predicted P-loop-containing kinase | low | > 62 |
Not shown: 10 genomes with orthologs for PP_1598 only; 10 genomes with orthologs for PP_0949 only