Conservation of cofitness between PP_0003 and PP_0697 in Pseudomonas putida KT2440

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0003 16S RNA methyltransferase 1.0 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.34 4
Pseudomonas sp. BP01 0.98 JOY50_RS08385 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.97 JOY50_RS24755 rimI ribosomal protein S18-alanine N-acetyltransferase low > 84
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_672 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.81 PfGW456L13_1551 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_4204 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.82 Pf6N2E2_5188 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_11670 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.82 AO356_16260 ribosomal-protein-alanine acetyltransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1935 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.81 Pf1N1B4_2891 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) — —
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_10440 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.84 AO353_14585 ribosomal-protein-alanine acetyltransferase 0.28 58
Pseudomonas sp. RS175 0.83 PFR28_04586 Ribosomal RNA small subunit methyltransferase G 0.82 PFR28_03681 [Ribosomal protein S18]-alanine N-acetyltransferase 0.30 68
Pseudomonas sp. SVBP6 0.82 COO64_RS02075 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.84 COO64_RS03120 rimI ribosomal protein S18-alanine N-acetyltransferase low > 93
Pseudomonas orientalis W4I3 0.82 QF045_RS02900 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.83 QF045_RS06355 ribosomal protein S18-alanine N-acetyltransferase low > 93
Pseudomonas sp. DMC3 0.80 GFF568 Ribosomal RNA small subunit methyltransferase G 0.81 GFF4515 [Ribosomal protein S18]-alanine N-acetyltransferase low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_5131 16S rRNA m(7)G-527 methyltransferase 0.80 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 86
Pseudomonas simiae WCS417 0.79 PS417_28515 16S rRNA methyltransferase 0.81 PS417_03300 alanine acetyltransferase low > 88
Pseudomonas fluorescens SBW25 0.79 PFLU_RS30170 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.82 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS30170 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.82 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase 0.22 3
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_5131 16S rRNA m(7)G-527 methyltransferase 0.80 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 86
Pseudomonas lactucae CFBP13502 0.77 GEMAOFIL_00173 Ribosomal RNA small subunit methyltransferase G 0.82 GEMAOFIL_00878 [Ribosomal protein S18]-alanine N-acetyltransferase low > 96
Pseudomonas sp. S08-1 0.74 OH686_12665 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.75 OH686_08035 ribosomal-protein-alanine acetyltransferase low > 80
Pseudomonas aeruginosa PUPa3 0.74 DQ20_RS58580 rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.83 DQ20_RS57685 rimI;go_function=peptide-alanine-alpha-N-acetyltransferase ribosomal protein S18-alanine N-acetyltransferase low > 101
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS26160 rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.83 DY961_RS29240 rimI;go_function=peptide-alanine-alpha-N-acetyltransferase ribosomal protein S18-alanine N-acetyltransferase low > 100
Pseudomonas aeruginosa PA14 0.73 IKLFDK_25590 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.83 IKLFDK_00095 ribosomal protein S18-alanine N-acetyltransferase low > 98
Pseudomonas segetis P6 0.73 MPMX49_00244 Ribosomal RNA small subunit methyltransferase G 0.81 MPMX49_01298 [Ribosomal protein S18]-alanine N-acetyltransferase low > 75
Pseudomonas stutzeri RCH2 0.65 Psest_4364 16S rRNA (guanine(527)-N(7))-methyltransferase GidB 0.81 Psest_1058 ribosomal-protein-alanine acetyltransferase low > 67
Marinobacter adhaerens HP15 0.47 HP15_3689 glucose-inhibited division protein B 0.38 HP15_540 ribosomal-protein-alanine acetyltransferase low > 73
Enterobacter sp. TBS_079 0.46 MPMX20_04627 Ribosomal RNA small subunit methyltransferase G 0.29 MPMX20_00671 [Ribosomal protein S18]-alanine N-acetyltransferase low > 85
Klebsiella michiganensis M5al 0.46 BWI76_RS00225 16S rRNA methyltransferase G 0.29 BWI76_RS04090 ribosomal-protein-alanine N-acetyltransferase RimI low > 92
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4016 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 EX28DRAFT_3581 ribosomal-protein-alanine acetyltransferase low > 76
Escherichia coli ECRC100 0.45 OKFHMN_14790 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 OKFHMN_11290 rimI ribosomal protein S18-alanine N-acetyltransferase low > 79
Escherichia coli BW25113 0.45 b3740 gidB glucose-inhibited division protein B (NCBI) 0.31 b4373 rimI ribosomal-protein-alanine N-acetyltransferase (NCBI) 0.30 55
Escherichia coli ECRC101 0.45 MCAODC_05295 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 MCAODC_01805 rimI ribosomal protein S18-alanine N-acetyltransferase low > 87
Escherichia coli BL21 0.45 ECD_03624 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein 0.31 ECD_04248 ribosomal-protein-S18-alanine N-acetyltransferase low > 61
Escherichia coli ECRC98 0.45 JDDGAC_18410 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 JDDGAC_14885 rimI ribosomal protein S18-alanine N-acetyltransferase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_04313 Ribosomal RNA small subunit methyltransferase G 0.31 OHPLBJKB_03689 Ribosomal-protein-alanine acetyltransferase low > 74
Escherichia coli Nissle 1917 0.45 ECOLIN_RS21510 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 ECOLIN_RS25100 ribosomal protein S18-alanine N-acetyltransferase low > 55
Escherichia coli ECOR27 0.45 NOLOHH_06925 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 NOLOHH_03610 rimI ribosomal protein S18-alanine N-acetyltransferase 0.39 29
Escherichia coli ECRC102 0.45 NIAGMN_12545 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 NIAGMN_09140 rimI ribosomal protein S18-alanine N-acetyltransferase low > 80
Escherichia coli ECRC62 0.45 BNILDI_04600 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 BNILDI_07990 rimI ribosomal protein S18-alanine N-acetyltransferase low > 75
Escherichia fergusonii Becca 0.45 EFB2_04893 Ribosomal RNA small subunit methyltransferase G 0.31 EFB2_04074 [Ribosomal protein S18]-alanine N-acetyltransferase low > 86
Escherichia coli ECRC99 0.45 KEDOAH_13360 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 KEDOAH_16855 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECOR38 0.45 HEPCGN_13505 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 HEPCGN_09295 rimI ribosomal protein S18-alanine N-acetyltransferase low > 88
Pantoea agglomerans CFBP13505 P0401 0.45 PagCFBP13505_RS19040 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 PagCFBP13505_RS08510 ribosomal-protein-alanine N-acetyltransferase low > 74
Klebsiella pneumoniae MKP103 0.45 KDGMDA_08835 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 KDGMDA_12360 ribosomal protein S18-alanine N-acetyltransferase low > 95
Erwinia amylovora T8 0.45 OLJFJH_05315 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.34 OLJFJH_01915 ribosomal protein S18-alanine N-acetyltransferase low > 58
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_14050 ribosomal RNA small subunit methyltransferase G 0.36 CSW01_03460 ribosomal-protein-alanine N-acetyltransferase low > 62
Pantoea sp. MT58 0.44 IAI47_00295 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.33 IAI47_16365 ribosomal protein S18-alanine N-acetyltransferase low > 76
Dechlorosoma suillum PS 0.44 Dsui_0847 16S rRNA (guanine(527)-N(7))-methyltransferase GidB 0.40 Dsui_2404 ribosomal-protein-alanine acetyltransferase low > 51
Rahnella sp. WP5 0.43 EX31_RS06135 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.32 EX31_RS04110 ribosomal protein S18-alanine N-acetyltransferase low > 89
Serratia liquefaciens MT49 0.43 IAI46_25115 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.35 IAI46_02870 ribosomal protein S18-alanine N-acetyltransferase low > 87
Erwinia tracheiphila SCR3 0.43 LU632_RS24810 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.27 LU632_RS03760 rimI ribosomal protein S18-alanine N-acetyltransferase low > 73
Erwinia tracheiphila HP pepo 2.2 0.42 IJEDHG_09155 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.27 IJEDHG_05105 rimI ribosomal protein S18-alanine N-acetyltransferase low > 61
Pectobacterium carotovorum WPP14 0.42 HER17_RS21605 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.34 HER17_RS18090 ribosomal protein S18-alanine N-acetyltransferase low > 75
Shewanella sp. ANA-3 0.42 Shewana3_0001 gidB 16S rRNA methyltransferase GidB (RefSeq) 0.29 Shewana3_0987 SSU ribosomal protein S18P alanine acetyltransferase (RefSeq) — —
Dickeya dianthicola 67-19 0.42 HGI48_RS21385 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.34 HGI48_RS03330 ribosomal protein S18-alanine N-acetyltransferase low > 71
Dickeya dadantii 3937 0.41 DDA3937_RS21600 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.34 DDA3937_RS03180 ribosomal protein S18-alanine N-acetyltransferase low > 74
Shewanella oneidensis MR-1 0.41 SO4757 gidB glucose-inhibited division protein B (NCBI ptt file) 0.28 SO1160 rimI ribosomal-protein-alanine acetyltransferase (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.41 DZA65_RS22365 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.34 DZA65_RS03375 ribosomal protein S18-alanine N-acetyltransferase low > 75
Shewanella loihica PV-4 0.41 Shew_3855 gidB glucose-inhibited division protein B (RefSeq) 0.29 Shew_2943 ribosomal-protein-alanine acetyltransferase (RefSeq) — —
Rhodanobacter sp000427505 FW510-R12 0.40 LRK53_RS02455 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.29 LRK53_RS05590 ribosomal protein S18-alanine N-acetyltransferase low > 59
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0378 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) 0.33 B158DRAFT_2236 [SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128) low > 40
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_15445 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.30 OKGIIK_11225 rimI ribosomal protein S18-alanine N-acetyltransferase low > 53
Methylophilus sp. DMC18 0.40 GFF2101 Ribosomal RNA small subunit methyltransferase G 0.42 GFF2609 [Ribosomal protein S18]-alanine N-acetyltransferase low > 43
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS08680 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 LRK54_RS04340 ribosomal protein S18-alanine N-acetyltransferase low > 59
Rhodanobacter denitrificans MT42 0.40 LRK55_RS08445 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.31 LRK55_RS04115 ribosomal protein S18-alanine N-acetyltransferase low > 63
Shewanella amazonensis SB2B 0.39 Sama_3654 gidB 16S rRNA methyltransferase GidB (RefSeq) 0.31 Sama_2596 ribosomal-protein-alanine acetyltransferase (RefSeq) low > 62
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS08860 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.32 RALBFv3_RS00190 ribosomal-protein-alanine N-acetyltransferase — —
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS29340 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.36 QEN71_RS06290 ribosomal protein S18-alanine N-acetyltransferase 0.40 144
Ralstonia solanacearum UW163 0.39 UW163_RS04750 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.32 UW163_RS13520 ribosomal-protein-alanine N-acetyltransferase — —
Variovorax sp. SCN45 0.38 GFF3337 16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170) 0.29 GFF5521 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128) low > 127
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4955 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.35 Ac3H11_667 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 79
Lysobacter sp. OAE881 0.38 ABIE51_RS01740 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.42 ABIE51_RS04455 ribosomal protein S18-alanine N-acetyltransferase low > 62
Ralstonia solanacearum PSI07 0.38 RPSI07_RS08415 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.33 RPSI07_RS17290 ribosomal-protein-alanine N-acetyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS14875 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.32 ABZR86_RS10505 ribosomal protein S18-alanine N-acetyltransferase low > 74
Variovorax sp. OAS795 0.38 ABID97_RS02910 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.29 ABID97_RS01660 ribosomal protein S18-alanine N-acetyltransferase low > 91
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02386 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) 0.31 H281DRAFT_00584 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 103
Ralstonia solanacearum GMI1000 0.37 RS_RS16670 ribosomal RNA small subunit methyltransferase G 0.30 RS_RS06860 ribosomal-protein-alanine N-acetyltransferase — —
Paraburkholderia graminis OAS925 0.37 ABIE53_000263 16S rRNA (guanine527-N7)-methyltransferase 0.38 ABIE53_002532 ribosomal-protein-alanine N-acetyltransferase low > 113
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS19435 16S rRNA methyltransferase 0.32 BPHYT_RS12265 alanine acetyltransferase low > 109
Acinetobacter baumannii LAC-4 0.37 RR41_RS12025 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.33 RR41_RS14925 ribosomal protein S18-alanine N-acetyltransferase low > 55
Acinetobacter radioresistens SK82 0.36 MPMX26_01214 Ribosomal RNA small subunit methyltransferase G 0.32 MPMX26_02428 [Ribosomal protein S18]-alanine N-acetyltransferase low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF2017 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.35 GFF2766 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 90
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS20210 16S rRNA methyltransferase 0.38 RR42_RS12055 acyltransferase low > 128
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.5135.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.46 Xcc-8004.4455.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU1250 gidB methyltransferase GidB (TIGR) 0.19 DVU1678 rimI ribosomal-protein-alanine acetyltransferase (TIGR) low > 55
Brevundimonas sp. GW460-12-10-14-LB2 0.14 A4249_RS13710 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.23 A4249_RS14730 GNAT family N-acetyltransferase low > 48
Caulobacter crescentus NA1000 0.13 CCNA_03870 methyltransferase GidB 0.23 CCNA_00056 ribosomal-protein-S18-alanine acetyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_03870 methyltransferase GidB 0.23 CCNA_00056 ribosomal-protein-S18-alanine acetyltransferase low > 67

Not shown: 9 genomes with orthologs for PP_0003 only; 9 genomes with orthologs for PP_0697 only