Conservation of cofitness between PP_2214 and PP_0123 in Pseudomonas putida KT2440

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2214 3-hydroxyacyl-CoA dehydrogenase type-2 1.0 PP_0123 DNA polymerase I, 5 0.28 18
Pseudomonas fluorescens SBW25 0.80 PFLU_RS14760 SDR family NAD(P)-dependent oxidoreductase 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS14760 SDR family NAD(P)-dependent oxidoreductase 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas sp. RS175 0.76 PFR28_01881 putative oxidoreductase 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas simiae WCS417 0.75 PS417_13860 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.79 PS417_00405 DNA polymerase I — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2981 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_1144 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_25690 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.80 AO353_10930 DNA polymerase I — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_26345 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_4785 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas stutzeri RCH2 0.68 Psest_2447 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.77 Psest_4219 DNA polymerase I low > 67
Pseudomonas sp. S08-1 0.67 OH686_00865 3-hydroxyacyl-CoA dehydrogenase or 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.77 OH686_12215 DNA polymerase I low > 80
Rhodospirillum rubrum S1H 0.66 Rru_A1507 short-chain dehydrogenase/reductase SDR (NCBI) 0.36 Rru_A3514 DNA polymerase A (NCBI) — —
Dechlorosoma suillum PS 0.66 Dsui_1624 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein 0.52 Dsui_0459 DNA polymerase I low > 51
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_06131 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family 0.50 H281DRAFT_06022 DNA polymerase I low > 103
Rhodopseudomonas palustris CGA009 0.65 TX73_011910 3-hydroxyacyl-CoA dehydrogenase 0.36 TX73_024545 DNA polymerase I low > 86
Paraburkholderia graminis OAS925 0.64 ABIE53_005415 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS00745 3-hydroxyacyl-CoA dehydrogenase 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS04630 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.53 HSERO_RS02260 DNA polymerase I low > 78
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS15890 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Ralstonia solanacearum GMI1000 0.61 RS_RS12705 3-hydroxyacyl-CoA dehydrogenase 0.51 RS_RS11195 DNA polymerase I low > 80
Ralstonia solanacearum UW163 0.61 UW163_RS08530 3-hydroxyacyl-CoA dehydrogenase 0.51 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS05095 3-hydroxyacyl-CoA dehydrogenase 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS02810 3-hydroxyacyl-CoA dehydrogenase 0.52 QEN71_RS17885 DNA polymerase I — —
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2606 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3825 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) @ 17hydroxysteroid dehydrogenase type 10 (HSD10)-like 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS03440 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.52 RR42_RS15050 DNA polymerase I low > 128
Ralstonia solanacearum PSI07 0.58 RPSI07_RS12200 3-hydroxyacyl-CoA dehydrogenase 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Variovorax sp. OAS795 0.58 ABID97_RS10560 3-hydroxyacyl-CoA dehydrogenase 0.48 ABID97_RS09180 DNA polymerase I 0.39 22
Azospirillum sp. SherDot2 0.56 MPMX19_02389 putative oxidoreductase 0.38 MPMX19_04869 DNA polymerase I low > 112
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS08630 SDR family NAD(P)-dependent oxidoreductase 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_09370 fabG 3-hydroxyacyl-CoA dehydrogenase 0.56 OKGIIK_16785 polA DNA polymerase I low > 52
Acinetobacter radioresistens SK82 0.54 MPMX26_01177 putative oxidoreductase 0.48 MPMX26_00574 DNA polymerase I — —
Azospirillum brasilense Sp245 0.54 AZOBR_RS26110 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 0.39 AZOBR_RS30685 DNA polymerase — —
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02080 SDR family oxidoreductase 0.56 LRK55_RS06585 DNA polymerase I low > 63
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS02325 SDR family oxidoreductase 0.56 LRK54_RS06840 DNA polymerase I low > 59
Castellaniella sp019104865 MT123 0.54 ABCV34_RS05365 3-hydroxyacyl-CoA dehydrogenase 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Marinobacter adhaerens HP15 0.53 HP15_1007 3-hydroxyacyl-CoA dehydrogenase type II 0.56 HP15_293 DNA polymerase I low > 73
Lysobacter sp. OAE881 0.53 ABIE51_RS13215 SDR family NAD(P)-dependent oxidoreductase 0.52 ABIE51_RS02010 DNA polymerase I — —
Agrobacterium fabrum C58 0.52 Atu1415 3-hydroxyacyl-CoA dehydrogenase type II 0.41 Atu0110 DNA polymerase I — —
Alteromonas macleodii MIT1002 0.51 MIT1002_01862 Levodione reductase 0.62 MIT1002_00014 DNA polymerase I low > 70
Magnetospirillum magneticum AMB-1 0.51 AMB_RS18130 KR domain-containing protein 0.39 AMB_RS21305 DNA polymerase I — —
Mycobacterium tuberculosis H37Rv 0.50 Rv1144 Probable short-chain type dehydrogenase/reductase 0.26 Rv1629 Probable DNA polymerase I PolA — —
Dinoroseobacter shibae DFL-12 0.50 Dshi_1700 short-chain dehydrogenase/reductase SDR (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Variovorax sp. SCN45 0.49 GFF2281 Short-chain dehydrogenase/reductase SDR 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.2924.1 Short-chain dehydrogenase/reductase SDR 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Phaeobacter inhibens DSM 17395 0.49 PGA1_c11320 3-hydroxyacyl-CoA dehydrogenase type-2 0.39 PGA1_c31780 DNA polymerase I low > 62
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_1000 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Bosea sp. OAE506 0.46 ABIE41_RS04860 SDR family NAD(P)-dependent oxidoreductase 0.31 ABIE41_RS03570 DNA polymerase I low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.44 A4249_RS12825 SDR family oxidoreductase 0.39 A4249_RS13840 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_00123 3-hydroxyacyl CoA dehydrogenase 0.40 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.40 CCNA_00123 3-hydroxyacyl CoA dehydrogenase 0.40 CCNA_03577 DNA polymerase I low > 66
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_2816 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4075 Short-chain dehydrogenase/reductase SDR 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4075 Short-chain dehydrogenase/reductase SDR 0.79 Psyr_0270 DNA polymerase I low > 86
Shewanella loihica PV-4 0.29 Shew_1673 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) low > 60
Shewanella amazonensis SB2B 0.29 Sama_1381 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Shewanella sp. ANA-3 0.28 Shewana3_2765 fabG 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.27 SO1683 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —

Not shown: 1 genomes with orthologs for PP_2214 only; 39 genomes with orthologs for PP_0123 only