Conservation of cofitness between LRK53_RS05045 and LRK53_RS09335 in Rhodanobacter sp000427505 FW510-R12

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodanobacter sp000427505 FW510-R12 1.0 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 1.0 LRK53_RS09335 long-chain-fatty-acid--CoA ligase 0.53 8
Rhodanobacter denitrificans FW104-10B01 0.95 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.97 LRK54_RS00795 long-chain-fatty-acid--CoA ligase low > 59
Rhodanobacter denitrificans MT42 0.95 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.97 LRK55_RS00570 long-chain-fatty-acid--CoA ligase low > 63
Rhodanobacter sp. FW510-T8 0.90 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.92 OKGIIK_06445 menE,fadK long-chain-fatty-acid--CoA ligase low > 53
Dyella japonica UNC79MFTsu3.2 0.80 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.87 ABZR86_RS02155 AMP-binding protein low > 74
Lysobacter sp. OAE881 0.64 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.73 ABIE51_RS11545 long-chain fatty acid--CoA ligase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.70 Xcc-8004.2896.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 74
Alteromonas macleodii MIT1002 0.57 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D 0.58 MIT1002_02588 Long-chain-fatty-acid--CoA ligase low > 70
Marinobacter adhaerens HP15 0.53 HP15_527 pseudouridine synthase, RluA family 0.55 HP15_1864 acyl-CoA synthase low > 73
Erwinia amylovora T8 0.53 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.58 OLJFJH_13100 long-chain-fatty-acid--CoA ligase FadD low > 58
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D 0.60 OHPLBJKB_01928 Long-chain-fatty-acid--CoA ligase low > 74
Escherichia coli BW25113 0.53 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) 0.60 b1805 fadD acyl-CoA synthase (NCBI) — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 ECOLIN_RS10040 long-chain-fatty-acid--CoA ligase FadD low > 55
Escherichia fergusonii Becca 0.53 EFB2_01296 Ribosomal large subunit pseudouridine synthase D 0.60 EFB2_02195 Long-chain-fatty-acid--CoA ligase low > 86
Escherichia coli BL21 0.53 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase 0.60 ECD_01775 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) low > 61
Escherichia coli ECRC99 0.53 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 KEDOAH_01515 fadD long-chain-fatty-acid--CoA ligase FadD — —
Escherichia coli ECOR27 0.53 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 NOLOHH_17115 fadD long-chain-fatty-acid--CoA ligase FadD low > 75
Escherichia coli ECRC98 0.53 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 JDDGAC_01170 fadD long-chain-fatty-acid--CoA ligase FadD low > 87
Escherichia coli ECRC62 0.53 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 BNILDI_15900 fadD long-chain-fatty-acid--CoA ligase FadD low > 75
Escherichia coli ECRC102 0.53 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 NIAGMN_01470 fadD long-chain-fatty-acid--CoA ligase FadD low > 80
Escherichia coli ECRC100 0.53 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 OKFHMN_26595 fadD long-chain-fatty-acid--CoA ligase FadD low > 79
Escherichia coli ECRC101 0.53 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 MCAODC_18815 fadD long-chain-fatty-acid--CoA ligase FadD low > 87
Escherichia coli ECOR38 0.53 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 HEPCGN_04985 fadD long-chain-fatty-acid--CoA ligase FadD low > 88
Pseudomonas sp. S08-1 0.53 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase 0.55 OH686_05750 Long-chain-fatty-acid--CoA ligase 0.57 77
Pectobacterium carotovorum WPP14 0.52 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.58 HER17_RS11275 long-chain-fatty-acid--CoA ligase FadD low > 75
Klebsiella michiganensis M5al 0.52 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase 0.59 BWI76_RS17800 long-chain-fatty-acid--CoA ligase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.60 GFF2820 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 78
Shewanella sp. ANA-3 0.52 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) 0.61 Shewana3_2386 long-chain-fatty-acid--CoA ligase (RefSeq) low > 73
Klebsiella pneumoniae MKP103 0.52 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 KDGMDA_25120 long-chain-fatty-acid--CoA ligase FadD low > 94
Pseudomonas aeruginosa PUPa3 0.52 NPBIFN_04812 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.56 NPBIFN_01697 long-chain-fatty-acid--CoA ligase low > 101
Pseudomonas aeruginosa PA14 0.52 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.56 IKLFDK_16900 long-chain-fatty-acid--CoA ligase low > 98
Pantoea sp. MT58 0.52 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.59 IAI47_08835 long-chain-fatty-acid--CoA ligase FadD low > 76
Pseudomonas aeruginosa MRSN321 0.52 PFGADD_04751 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.57 PFGADD_01661 long-chain-fatty-acid--CoA ligase low > 99
Klebsiella pneumoniae MRSN742743 0.52 GJGHJB_01188 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 GJGHJB_01855 fadD long-chain-fatty-acid--CoA ligase FadD low > 83
Pantoea agglomerans CFBP13505 P0401 0.52 PagCFBP13516_RS04800 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.59 PagCFBP13516_RS08970 fadD long-chain-fatty-acid--CoA ligase FadD low > 80
Pseudomonas putida KT2440 0.52 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase 0.56 PP_4549 long-chain-fatty-acid/CoA ligase — —
Serratia liquefaciens MT49 0.52 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 IAI46_14535 long-chain-fatty-acid--CoA ligase FadD low > 87
Shewanella loihica PV-4 0.51 Shew_2950 RluA family pseudouridine synthase (RefSeq) 0.61 Shew_2188 long-chain-fatty-acid--CoA ligase (RefSeq) low > 60
Dickeya dianthicola 67-19 0.51 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.57 HGI48_RS11260 long-chain-fatty-acid--CoA ligase FadD low > 71
Enterobacter asburiae PDN3 0.51 EX28DRAFT_2695 pseudouridine synthase, RluA family 0.60 EX28DRAFT_0753 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 76
Rahnella sp. WP5 0.51 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.59 EX31_RS10600 long-chain-fatty-acid--CoA ligase FadD low > 89
Dickeya dianthicola ME23 0.51 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.57 DZA65_RS11605 long-chain-fatty-acid--CoA ligase FadD low > 75
Pseudomonas segetis P6 0.51 ACVTMO_RS19440 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.54 ACVTMO_RS16225 fadD2 long-chain-fatty-acid--CoA ligase FadD2 low > 75
Pseudomonas sp. BP01 0.51 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.56 JOY50_RS01310 fadD1 long-chain-fatty-acid--CoA ligase FadD1 low > 84
Enterobacter sp. TBS_079 0.51 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D 0.60 MPMX20_02711 Long-chain-fatty-acid--CoA ligase low > 85
Pseudomonas sp. SVBP6 0.50 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.56 COO64_RS22015 fadD1 long-chain-fatty-acid--CoA ligase FadD1 low > 91
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_15925 ribosomal large subunit pseudouridine synthase D 0.54 AO356_05100 long-chain fatty acid--CoA ligase low > 104
Shewanella amazonensis SB2B 0.50 Sama_2605 pseudouridylate synthase (RefSeq) 0.60 Sama_1934 long-chain-fatty-acid--CoA ligase (RefSeq) — —
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.55 PFLU_RS23680 long-chain fatty acid--CoA ligase low > 109
Pseudomonas fluorescens SBW25 0.50 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.55 PFLU_RS23680 long-chain fatty acid--CoA ligase low > 109
Pseudomonas simiae WCS417 0.50 PS417_03820 ribosomal large subunit pseudouridine synthase D 0.55 PS417_22065 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_0726 ribosomal large subunit pseudouridine synthase D 0.54 Psyr_3834 AMP-dependent synthetase and ligase low > 86
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_14220 ribosomal large subunit pseudouridine synthase D 0.55 AO353_03315 long-chain fatty acid--CoA ligase low > 101
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_0726 ribosomal large subunit pseudouridine synthase D 0.54 Psyr_3834 AMP-dependent synthetase and ligase low > 86
Pseudomonas sp. FW215-L2 0.50 GFF4881 Ribosomal large subunit pseudouridine synthase D 0.55 GFF3495 Long-chain-fatty-acid--CoA ligase low > 111
Pseudomonas orientalis W4I3 0.50 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.56 QF045_RS24200 long-chain-fatty-acid--CoA ligase FadD1 low > 93
Pseudomonas lactucae CFBP13502 0.50 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D 0.55 GEMAOFIL_04549 Long-chain-fatty-acid--CoA ligase low > 96
Pseudomonas protegens RBAN4 0.50 FABNJH_26810 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.56 FABNJH_23740 long-chain-fatty-acid--CoA ligase — —
Pseudomonas stutzeri RCH2 0.50 Psest_0709 pseudouridine synthase, RluA family 0.55 Psest_1334 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 67
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.55 Pf6N2E2_2872 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) — —
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.55 PfGW456L13_1910 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) — —
Pseudomonas sp. DMC3 0.50 GFF4004 Ribosomal large subunit pseudouridine synthase D 0.55 GFF5130 Long-chain-fatty-acid--CoA ligase low > 89
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.48 Pf1N1B4_575 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) — —
Pseudomonas sp. RS175 0.49 PFR28_03748 Ribosomal large subunit pseudouridine synthase D 0.55 PFR28_00584 Long-chain-fatty-acid--CoA ligase low > 88
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.59 CSW01_09905 long-chain-fatty-acid--CoA ligase FadD low > 62
Acinetobacter baumannii LAC-4 0.47 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.52 RR41_RS17925 long-chain-fatty-acid--CoA ligase low > 55
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific 0.59 B158DRAFT_1573 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 40
Ralstonia solanacearum GMI1000 0.43 RS_RS08205 RluA family pseudouridine synthase 0.60 RS_RS14290 long-chain-fatty-acid--CoA ligase low > 80
Ralstonia solanacearum PSI07 0.43 RPSI07_RS15970 RluA family pseudouridine synthase 0.61 RPSI07_RS10900 long-chain-fatty-acid--CoA ligase low > 81
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS13315 RluA family pseudouridine synthase 0.61 ABZR87_RS02020 long-chain fatty acid--CoA ligase 0.57 68
Acinetobacter radioresistens SK82 0.43 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D 0.50 MPMX26_00141 Long-chain-fatty-acid--CoA ligase low > 36
Ralstonia solanacearum UW163 0.42 UW163_RS14830 RluA family pseudouridine synthase 0.60 UW163_RS07285 long-chain-fatty-acid--CoA ligase — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS01520 RluA family pseudouridine synthase 0.60 RALBFv3_RS06340 long-chain-fatty-acid--CoA ligase low > 76
Sphingobium sp. HT1-2 0.42 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) 0.28 GFF4751 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 95
Collimonas humicola GW821-FHT01A05 0.39 MPMX01_02853 Ribosomal large subunit pseudouridine synthase D 0.61 MPMX01_04597 Long-chain-fatty-acid--CoA ligase low > 87
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_0664 pseudouridine synthase, RluA family 0.25 Ga0059261_1004 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 68
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.58 Ac3H11_663 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 79
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D 0.59 HSERO_RS19285 long-chain fatty acid--CoA ligase low > 78
Agrobacterium fabrum C58 0.37 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily 0.56 Atu0405 long-chain-fatty-acid-CoA-ligase — —
Sinorhizobium meliloti 1021 0.37 SMc00647 ribosomal large subunit pseudouridine synthase 0.53 SMc02162 long-chain-fatty-acid--CoA ligase low > 103
Variovorax sp. SCN45 0.37 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) 0.58 GFF7283 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 127
Rhizobium sp. OAE497 0.37 ABIE40_RS14790 RluA family pseudouridine synthase 0.57 ABIE40_RS02155 long-chain fatty acid--CoA ligase low > 107
Echinicola vietnamensis KMM 6221, DSM 17526 0.36 Echvi_0642 pseudouridine synthase, RluA family 0.56 Echvi_2567 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 79
Variovorax sp. OAS795 0.36 ABID97_RS14190 RluA family pseudouridine synthase 0.57 ABID97_RS04445 long-chain-fatty-acid--CoA ligase low > 91
Azospirillum sp. SherDot2 0.36 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D 0.33 MPMX19_02151 Long-chain-fatty-acid--CoA ligase low > 112
Castellaniella sp019104865 MT123 0.36 ABCV34_RS01885 RluA family pseudouridine synthase 0.59 ABCV34_RS11410 AMP-binding protein low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.58 GFF2607 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 92
Rhodospirillum rubrum S1H 0.34 Rru_A1111 Pseudouridine synthase, RluD (NCBI) 0.29 Rru_A1312 AMP-dependent synthetase and ligase (NCBI) low > 58
Xanthobacter sp. DMC5 0.34 GFF2508 Ribosomal large subunit pseudouridine synthase D 0.29 GFF521 Long-chain-fatty-acid--CoA ligase — —
Bosea sp. OAE506 0.33 ABIE41_RS05635 RluA family pseudouridine synthase 0.51 ABIE41_RS11685 AMP-binding protein low > 77
Phaeobacter inhibens DSM 17395 0.33 PGA1_c09000 ribosomal large subunit pseudouridine synthase D 0.35 PGA1_c25300 long-chain-fatty-acid--CoA ligase FadD low > 62
Dinoroseobacter shibae DFL-12 0.32 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) 0.43 Dshi_1000 AMP-dependent synthetase and ligase (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.32 TX73_001905 RluA family pseudouridine synthase 0.58 TX73_022105 long-chain fatty acid--CoA ligase low > 86

Not shown: 22 genomes with orthologs for LRK53_RS05045 only; 9 genomes with orthologs for LRK53_RS09335 only