| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pantoea sp. MT58 | 1.0 | IAI47_14360 | | ABC transporter permease | 1.0 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.25 | 19 |
| Erwinia tracheiphila SCR3 | 0.73 | LU632_RS15255 | | ABC transporter permease | 0.63 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.46 | 17 |
| Klebsiella michiganensis M5al | 0.70 | BWI76_RS06955 | | sugar ABC transporter permease | 0.63 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.70 | EX28DRAFT_2463 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.65 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 76 |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_06595 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.63 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 87 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_01094 | | hypothetical protein | 0.65 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 85 |
| Escherichia coli ECRC98 | 0.69 | JDDGAC_11610 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.63 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Escherichia coli ECRC99 | 0.69 | KEDOAH_20005 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.63 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Escherichia fergusonii Becca | 0.69 | EFB2_03559 | | hypothetical protein | 0.63 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Escherichia coli ECRC102 | 0.69 | NIAGMN_06015 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.63 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Escherichia coli ECRC100 | 0.69 | OKFHMN_07965 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.63 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 80 |
| Escherichia coli ECRC101 | 0.69 | MCAODC_27180 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.63 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 87 |
| Escherichia coli ECRC62 | 0.69 | BNILDI_22375 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.63 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Escherichia coli BW25113 | 0.69 | b0496 | ybbP | predicted inner membrane protein (NCBI) | 0.64 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.69 | ECOLIN_RS02930 | | putative ABC transporter permease subunit YbbP | 0.64 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 55 |
| Escherichia coli ECOR27 | 0.69 | NOLOHH_00955 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.63 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.69 | OHPLBJKB_03178 | | hypothetical protein | 0.64 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 73 |
| Escherichia coli BL21 | 0.69 | ECD_00447 | | putative ABC transporter permease | 0.63 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | low | > 61 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.68 | GFF4414 | | FIG00809136: hypothetical protein | 0.61 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 78 |
| Rahnella sp. WP5 | 0.68 | EX31_RS22615 | | ABC transporter permease | 0.62 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.68 | HER17_RS15490 | | ABC transporter permease | 0.65 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Serratia liquefaciens MT49 | 0.65 | IAI46_05355 | | ABC transporter permease | 0.65 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS06365 | | ABC transporter permease | 0.62 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Dickeya dianthicola 67-19 | 0.62 | HGI48_RS06020 | | ABC transporter permease | 0.62 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 71 |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS05970 | | ABC transporter permease | 0.62 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.29 | MIT1002_01416 | | outer membrane-specific lipoprotein transporter subunit LolE | 0.32 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 70 |
| Shewanella amazonensis SB2B | 0.27 | Sama_1487 | | ABC transporter, permease, putative (RefSeq) | 0.43 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.27 | B158DRAFT_2226 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.35 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 40 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_1539 | | hypothetical protein (RefSeq) | 0.41 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 73 |
| Marinobacter adhaerens HP15 | 0.26 | HP15_1386 | | ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.36 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | low | > 73 |
| Shewanella loihica PV-4 | 0.26 | Shew_2401 | | hypothetical protein (RefSeq) | 0.43 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 60 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_00956 | | hypothetical protein | 0.32 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 88 |
| Shewanella oneidensis MR-1 | 0.25 | SO2926 | | ABC transporter, permease, putative (NCBI ptt file) | 0.41 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N1B4 | 0.25 | Pf1N1B4_297 | | FIG00809136: hypothetical protein | 0.34 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.48 | 34 |
| Vibrio cholerae E7946 ATCC 55056 | 0.25 | CSW01_18080 | | ABC transporter permease | 0.47 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 62 |
| Pseudomonas fluorescens GW456-L13 | 0.25 | PfGW456L13_2217 | | FIG00809136: hypothetical protein | 0.31 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.25 | Psyr_2066 | | Protein of unknown function DUF214:Fimbrial assembly | 0.34 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.25 | Psyr_2066 | | Protein of unknown function DUF214:Fimbrial assembly | 0.34 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 86 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_08395 | | ABC transporter permease | 0.35 | PS417_20155 | | 23S rRNA methyltransferase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.24 | AO353_18995 | | ABC transporter permease | 0.32 | AO353_02715 | | 23S rRNA methyltransferase | low | > 101 |
| Ralstonia solanacearum PSI07 | 0.24 | RPSI07_RS14190 | | ABC transporter permease | 0.28 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.24 | RS_RS10490 | | ABC transporter permease | 0.29 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 80 |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS10605 | | ABC transporter permease | 0.28 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS03120 | | ABC transporter permease | 0.28 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 76 |
| Pseudomonas putida KT2440 | 0.23 | PP_2316 | | putative ABC transporter, permease protein | 0.33 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 96 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS15020 | | ABC transporter permease | 0.29 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.23 | Ac3H11_3795 | | ABC transporter, permease protein, putative | 0.28 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 79 |
| Pseudomonas fluorescens SBW25 | 0.23 | PFLU_RS08345 | | ABC transporter permease | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.23 | PFLU_RS08345 | | ABC transporter permease | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Variovorax sp. SCN45 | 0.23 | GFF5663 | | ABC transporter, fused permease protein | 0.26 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | low | > 127 |
| Dechlorosoma suillum PS | 0.23 | Dsui_2415 | | putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.32 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 51 |
| Pseudomonas stutzeri RCH2 | 0.22 | Psest_2338 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.36 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 67 |
| Pseudomonas sp. S08-1 | 0.22 | OH686_01800 | | ABC transporter, fused permease protein | 0.34 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.21 | GFF1178 | | ABC transporter, permease protein, putative | 0.28 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS09380 | | ABC transporter permease | 0.31 | HSERO_RS14825 | | 23S rRNA methyltransferase | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.20 | QEN71_RS24320 | | ABC transporter permease | 0.28 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 153 |
| Lysobacter sp. OAE881 | 0.20 | ABIE51_RS18495 | | FtsX-like permease family protein | 0.31 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 62 |
| Cupriavidus basilensis FW507-4G11 | 0.19 | RR42_RS05370 | | ABC transporter permease | 0.29 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.40 | 9 |
| Acinetobacter radioresistens SK82 | 0.19 | MPMX26_02338 | | hypothetical protein | 0.32 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 36 |
| Burkholderia phytofirmans PsJN | 0.19 | BPHYT_RS06480 | | ABC transporter permease | 0.31 | BPHYT_RS09125 | | 23S rRNA methyltransferase | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.19 | H281DRAFT_04537 | | putative ABC transport system permease protein | 0.30 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 103 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.18 | Xcc-8004.4289.1 | | ABC transporter, permease protein, putative | 0.32 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 74 |
| Rhizobium sp. OAE497 | 0.15 | ABIE40_RS18245 | | ABC transporter permease | 0.13 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | low | > 107 |
| Phaeobacter inhibens DSM 17395 | 0.15 | PGA1_c26390 | | ABC transporter, permease protein | 0.14 | PGA1_c34810 | | putative RNA methyltransferase | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.14 | CA264_05670 | | ABC transporter permease | 0.18 | CA264_02005 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.14 | CA265_RS01135 | | ABC transporter permease | 0.16 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 88 |
| Rhodopseudomonas palustris CGA009 | 0.14 | TX73_001020 | | ABC transporter permease | 0.17 | TX73_004885 | | methyltransferase | low | > 86 |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS04805 | | FtsX-like permease family protein | 0.14 | ABIE41_RS22255 | | RNA methyltransferase | low | > 77 |
| Sinorhizobium meliloti 1021 | 0.13 | SMc03838 | | hypothetical protein | 0.13 | SMc00974 | | RNA methyltransferase | low | > 103 |
| Agrobacterium fabrum C58 | 0.13 | Atu2681 | | hypothetical protein | 0.14 | Atu0735 | | RNA methyltransferase | low | > 89 |
| Azospirillum sp. SherDot2 | 0.13 | MPMX19_02590 | | hypothetical protein | 0.13 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.12 | Dshi_2679 | | protein of unknown function DUF214 (RefSeq) | 0.15 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.11 | Rru_A3653 | | Protein of unknown function DUF214 (NCBI) | 0.14 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.10 | CCNA_01834 | | oxidoreductase | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | low | > 67 |
| Caulobacter crescentus NA1000 | 0.10 | CCNA_01834 | | oxidoreductase | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | low | > 66 |
| Dyella japonica UNC79MFTsu3.2 | 0.09 | ABZR86_RS10175 | | FtsX-like permease family protein | 0.35 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 74 |
| Azospirillum brasilense Sp245 | 0.09 | AZOBR_RS02255 | | glycosyl transferase family 1 | 0.15 | AZOBR_RS01195 | | RNA methyltransferase | low | > 97 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.09 | A4249_RS05700 | | ABC transporter permease | 0.14 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | low | > 48 |
Not shown: 4 genomes with orthologs for IAI47_14360 only; 16 genomes with orthologs for IAI47_04115 only