Conservation of cofitness between HSERO_RS04220 and HSERO_RS21535 in Herbaspirillum seropedicae SmR1

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS04220 epoxyqueuosine reductase 1.0 HSERO_RS21535 NADH dehydrogenase 0.38 4
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG 0.74 QEN71_RS13375 alkyl hydroperoxide reductase subunit F low > 153
Paraburkholderia graminis OAS925 0.64 ABIE53_003363 epoxyqueuosine reductase 0.74 ABIE53_005905 alkyl hydroperoxide reductase subunit F low > 113
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS15960 iron-sulfur cluster binding protein 0.74 BPHYT_RS26840 NADH dehydrogenase low > 109
Ralstonia solanacearum GMI1000 0.63 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG 0.71 RS_RS18340 alkyl hydroperoxide reductase subunit F low > 80
Ralstonia solanacearum PSI07 0.63 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG 0.70 RPSI07_RS00935 alkyl hydroperoxide reductase subunit F low > 81
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG 0.72 ABZR87_RS17240 alkyl hydroperoxide reductase subunit F low > 80
Ralstonia solanacearum UW163 0.62 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG 0.71 UW163_RS22810 alkyl hydroperoxide reductase subunit F
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG 0.71 RALBFv3_RS22265 alkyl hydroperoxide reductase subunit F low > 76
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04128 epoxyqueuosine reductase 0.74 H281DRAFT_02889 alkyl hydroperoxide reductase subunit F
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF5474 Epoxyqueuosine (oQ) reductase QueG 0.65 GFF3915 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 90
Acidovorax sp. GW101-3H11 0.60 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG 0.66 Ac3H11_232 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 79
Pseudomonas sp. S08-1 0.59 OH686_09500 epoxyqueuosine reductase 0.68 OH686_18675 alkyl hydroperoxide reductase subunit F low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_0566 4Fe-4S cluster binding protein 0.69 Psyr_2974 FAD-dependent pyridine nucleotide-disulfide oxidoreductase low > 86
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_0566 4Fe-4S cluster binding protein 0.69 Psyr_2974 FAD-dependent pyridine nucleotide-disulfide oxidoreductase low > 86
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG 0.69 ABZR86_RS08495 alkyl hydroperoxide reductase subunit F low > 74
Castellaniella sp019104865 MT123 0.58 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG 0.70 ABCV34_RS09915 alkyl hydroperoxide reductase subunit F low > 48
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG 0.71 Pf1N1B4_5010 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 87
Pseudomonas fluorescens SBW25 0.57 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.69 PFLU_RS14575 alkyl hydroperoxide reductase subunit F low > 109
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_13115 epoxyqueuosine reductase 0.71 AO353_26960 alkyl hydroperoxide reductase subunit F low > 101
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.69 PFLU_RS14575 alkyl hydroperoxide reductase subunit F low > 109
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.71 PfGW456L13_2928 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 87
Pseudomonas sp. RS175 0.57 PFR28_05115 Epoxyqueuosine reductase 0.71 PFR28_02481 Alkyl hydroperoxide reductase subunit F low > 88
Pseudomonas simiae WCS417 0.57 PS417_02460 epoxyqueuosine reductase 0.71 PS417_14040 alkyl hydroperoxide reductase low > 88
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_08685 epoxyqueuosine reductase 0.72 AO356_22810 alkyl hydroperoxide reductase subunit F low > 104
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG 0.72 Pf6N2E2_448 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 103
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG 0.71 LRK54_RS00710 alkyl hydroperoxide reductase subunit F low > 59
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG 0.70 OKGIIK_06550 ahpF alkyl hydroperoxide reductase subunit F low > 52
Escherichia coli ECRC100 0.55 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG 0.60 OKFHMN_07505 Alkyl hydroperoxide reductase subunit F low > 80
Rhodanobacter denitrificans MT42 0.55 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG 0.71 LRK55_RS00485 alkyl hydroperoxide reductase subunit F low > 63
Pseudomonas stutzeri RCH2 0.55 Psest_0677 iron-sulfur cluster binding protein, putative 0.71 Psest_1134 alkyl hydroperoxide reductase, F subunit low > 67
Escherichia coli ECRC99 0.55 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG 0.60 KEDOAH_20465 Alkyl hydroperoxide reductase subunit F
Escherichia coli ECOR38 0.55 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG 0.60 HEPCGN_00775 Alkyl hydroperoxide reductase subunit F low > 87
Escherichia coli ECRC98 0.55 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG 0.60 JDDGAC_11150 Alkyl hydroperoxide reductase subunit F low > 86
Variovorax sp. SCN45 0.55 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG 0.67 GFF2825 Alkyl hydroperoxide reductase protein F low > 127
Escherichia coli ECRC102 0.55 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG 0.60 NIAGMN_05560 Alkyl hydroperoxide reductase subunit F
Escherichia coli ECRC101 0.55 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG 0.60 MCAODC_26720 Alkyl hydroperoxide reductase subunit F low > 87
Escherichia coli BW25113 0.55 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.60 b0606 ahpF alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) low > 76
Escherichia coli ECOR27 0.55 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG 0.60 NOLOHH_23880 Alkyl hydroperoxide reductase subunit F low > 75
Escherichia coli ECRC62 0.55 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG 0.60 BNILDI_21890 Alkyl hydroperoxide reductase subunit F low > 75
Escherichia coli BL21 0.55 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis 0.60 ECD_00575 alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03876 Epoxyqueuosine reductase 0.60 OHPLBJKB_03099 Alkyl hydroperoxide reductase subunit F low > 73
Escherichia coli Nissle 1917 0.55 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG 0.60 ECOLIN_RS03325 alkyl hydroperoxide reductase subunit F low > 55
Dickeya dadantii 3937 0.55 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG 0.59 DDA3937_RS02520 alkyl hydroperoxide reductase subunit F low > 74
Escherichia fergusonii Becca 0.55 EFB2_04369 Epoxyqueuosine reductase 0.60 EFB2_03485 Alkyl hydroperoxide reductase subunit F low > 86
Dickeya dianthicola 67-19 0.55 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG 0.59 HGI48_RS02465 alkyl hydroperoxide reductase subunit F low > 71
Pseudomonas putida KT2440 0.55 PP_4900 epoxyqueuosine reductase 0.70 PP_2440 Alkyl hydroperoxide reductase subunit F low > 96
Dickeya dianthicola ME23 0.55 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG 0.59 DZA65_RS02570 alkyl hydroperoxide reductase subunit F low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF819 Epoxyqueuosine (oQ) reductase QueG 0.59 GFF4514 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 78
Klebsiella michiganensis M5al 0.54 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG 0.62 BWI76_RS07945 alkyl hydroperoxide reductase subunit F low > 92
Marinobacter adhaerens HP15 0.54 HP15_2505 iron-sulfur cluster binding protein 0.64 HP15_3619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase low > 73
Pectobacterium carotovorum WPP14 0.54 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG 0.60 HER17_RS02550 alkyl hydroperoxide reductase subunit F low > 75
Shewanella oneidensis MR-1 0.54 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) 0.62 SO0956 ahpF alkyl hydroperoxide reductase, F subunit (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.53 MPMX20_00447 Epoxyqueuosine reductase 0.60 MPMX20_01272 Alkyl hydroperoxide reductase subunit F low > 85
Enterobacter asburiae PDN3 0.53 EX28DRAFT_3363 epoxyqueuosine reductase 0.60 EX28DRAFT_2349 alkyl hydroperoxide reductase subunit F low > 76
Shewanella sp. ANA-3 0.53 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) 0.62 Shewana3_3326 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) low > 73
Lysobacter sp. OAE881 0.53 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG 0.69 ABIE51_RS05480 alkyl hydroperoxide reductase subunit F low > 62
Alteromonas macleodii MIT1002 0.53 MIT1002_03794 Epoxyqueuosine reductase 0.46 MIT1002_01785 NADH dehydrogenase low > 70
Shewanella loihica PV-4 0.53 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) 0.60 Shew_0793 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) low > 60
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG 0.67 Xcc-8004.4222.1 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 74
Pantoea sp. MT58 0.52 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG 0.60 IAI47_06795 alkyl hydroperoxide reductase subunit F low > 76
Shewanella amazonensis SB2B 0.50 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) 0.61 Sama_0618 alkyl hydroperoxide reductase, F subunit (RefSeq) low > 62
Dechlorosoma suillum PS 0.50 Dsui_3502 iron-sulfur cluster binding protein, putative 0.67 Dsui_1902 alkyl hydroperoxide reductase, F subunit low > 51
Acinetobacter radioresistens SK82 0.48 MPMX26_01783 Epoxyqueuosine reductase 0.59 MPMX26_02042 Alkyl hydroperoxide reductase subunit F low > 36
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0486 iron-sulfur cluster binding protein, putative 0.43 B158DRAFT_0279 alkyl hydroperoxide reductase, F subunit low > 40
Rhodospirillum rubrum S1H 0.33 Rru_A0279 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) 0.68 Rru_A1417 thioredoxin-disulfide reductase (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS11375 tRNA epoxyqueuosine(34) reductase QueG 0.65 A4249_RS04545 alkyl hydroperoxide reductase subunit F low > 48
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03753 iron-sulfur cluster-binding protein 0.65 CCNA_03013 alkyl hydroperoxide reductase subunit F low > 67
Caulobacter crescentus NA1000 0.32 CCNA_03753 iron-sulfur cluster-binding protein 0.65 CCNA_03013 alkyl hydroperoxide reductase subunit F low > 66
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_1058 epoxyqueuosine reductase 0.63 Ga0059261_0156 alkyl hydroperoxide reductase subunit F low > 68
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS06835 tRNA epoxyqueuosine(34) reductase QueG 0.40 HMPREF1078_RS04200 alkyl hydroperoxide reductase subunit F low > 61
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3245 putative iron-sulfur cluster-binding protein (NCBI ptt file) 0.42 BT2811 alkyl hydroperoxide reductase subunit F (NCBI ptt file) low > 81

Not shown: 17 genomes with orthologs for HSERO_RS04220 only; 6 genomes with orthologs for HSERO_RS21535 only