Conservation of cofitness between HER17_RS15240 and HER17_RS21740 in Pectobacterium carotovorum WPP14

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 HER17_RS21740 NCS2 family permease 0.56 18
Dickeya dianthicola ME23 0.98 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.92 DZA65_RS22590 NCS2 family permease low > 75
Dickeya dadantii 3937 0.98 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.92 DDA3937_RS21425 NCS2 family permease — —
Dickeya dianthicola 67-19 0.97 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.92 HGI48_RS21605 NCS2 family permease — —
Serratia liquefaciens MT49 0.95 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.87 IAI46_25220 NCS2 family permease low > 86
Rahnella sp. WP5 0.95 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.84 EX31_RS06030 NCS2 family permease low > 89
Pantoea sp. MT58 0.92 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.84 IAI47_18810 NCS2 family permease low > 76
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.86 EX28DRAFT_3998 Permeases — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.86 GFF1740 Xanthine/uracil/thiamine/ascorbate permease family protein low > 78
Enterobacter sp. TBS_079 0.90 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.86 MPMX20_04645 Adenine permease AdeP low > 85
Escherichia coli BW25113 0.90 b0636 ybeA hypothetical protein (NCBI) 0.85 b3714 yieG predicted inner membrane protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.85 OHPLBJKB_04339 Adenine permease AdeP — —
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 ECOLIN_RS21385 adenine permease AdeP — —
Escherichia coli BL21 0.90 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.85 ECD_03598 adenine permease, high affinity; adenine:H+ symporter — —
Klebsiella michiganensis M5al 0.90 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 BWI76_RS00110 adenine permease PurP low > 92
Escherichia coli ECRC99 0.90 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 KEDOAH_13215 adeP adenine permease AdeP — —
Escherichia coli ECOR27 0.90 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 NOLOHH_07085 adeP adenine permease AdeP low > 75
Escherichia coli ECRC62 0.90 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 BNILDI_04445 adeP adenine permease AdeP — —
Escherichia coli ECOR38 0.90 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 HEPCGN_13640 adeP adenine permease AdeP low > 87
Escherichia coli ECRC102 0.90 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 NIAGMN_12690 adeP adenine permease AdeP — —
Escherichia coli ECRC101 0.90 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 MCAODC_05445 adeP adenine permease AdeP low > 87
Escherichia coli ECRC100 0.90 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 OKFHMN_14935 adeP adenine permease AdeP low > 80
Escherichia fergusonii Becca 0.90 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.85 EFB2_04918 Adenine permease AdeP low > 86
Escherichia coli ECRC98 0.90 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.85 JDDGAC_18555 adeP adenine permease AdeP — —
Vibrio cholerae E7946 ATCC 55056 0.83 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 CSW01_11595 NCS2 family permease low > 62
Shewanella loihica PV-4 0.81 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.56 Shew_2849 xanthine/uracil/vitamin C permease (RefSeq) low > 60
Shewanella amazonensis SB2B 0.80 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.56 Sama_2517 xanthine/uracil permease family protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.79 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.55 SO1120 xanthine/uracil permease family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.79 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.56 Shewana3_0953 xanthine/uracil/vitamin C permease (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.79 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.43 MIT1002_01579 putative adenine permease PurP — —
Marinobacter adhaerens HP15 0.67 HP15_604 conserved hypothetical protein CHP00246 0.53 HP15_2548 xanthine/uracil permease family protein low > 73
Pseudomonas sp. S08-1 0.63 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.54 OH686_16065 Xanthine/uracil/thiamine/ascorbate permease family protein low > 80
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4366 Protein of unknown function DUF163 0.54 Psyr_4286 Xanthine/uracil/vitamin C permease — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4366 Protein of unknown function DUF163 0.54 Psyr_4286 Xanthine/uracil/vitamin C permease low > 86
Pseudomonas putida KT2440 0.61 PP_4808 23S rRNA m3psi1915 methyltransferase 0.53 PP_4653 adenine:H+ symporter low > 96
Pseudomonas stutzeri RCH2 0.61 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.53 Psest_3450 Permeases low > 67
Pseudomonas sp. RS175 0.61 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.53 PFR28_03808 Adenine permease AdeP low > 88
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.54 Pf1N1B4_2755 Xanthine/uracil/thiamine/ascorbate permease family protein — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.54 Pf6N2E2_5064 Xanthine/uracil/thiamine/ascorbate permease family protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_15305 50S rRNA methyltransferase 0.54 AO356_15605 guanine permease low > 104
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_06480 50S rRNA methyltransferase 0.53 AO353_13910 guanine permease low > 101
Pseudomonas simiae WCS417 0.61 PS417_24730 50S rRNA methyltransferase 0.54 PS417_24380 guanine permease — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.54 PfGW456L13_1431 Xanthine/uracil/thiamine/ascorbate permease family protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.53 PFLU_RS26300 NCS2 family permease low > 109
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.53 PFLU_RS26300 NCS2 family permease low > 109
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 QEN71_RS12430 NCS2 family permease low > 153
Paraburkholderia graminis OAS925 0.50 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.48 ABIE53_005727 AGZA family xanthine/uracil permease-like MFS transporter — —
Lysobacter sp. OAE881 0.50 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.46 ABIE51_RS04590 NCS2 family permease low > 62
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.48 BPHYT_RS28070 adenine permease low > 109
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.49 H281DRAFT_01209 putative MFS transporter, AGZA family, xanthine/uracil permease low > 103
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.50 HSERO_RS16315 adenine permease low > 78
Variovorax sp. SCN45 0.48 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.50 GFF1843 Xanthine/uracil/thiamine/ascorbate permease family protein low > 127
Acinetobacter radioresistens SK82 0.48 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H 0.50 MPMX26_01078 Adenine permease AdeP low > 36
Variovorax sp. OAS795 0.48 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 ABID97_RS22110 NCS2 family permease low > 91
Ralstonia solanacearum GMI1000 0.46 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 RS_RS25155 NCS2 family permease — —
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.41 Xcc-8004.378.1 Xanthine/uracil/thiamine/ascorbate permease family protein — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 ABZR87_RS23585 NCS2 family permease low > 80
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 RALBFv3_RS23270 NCS2 family permease low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 UW163_RS16520 NCS2 family permease — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 ABCV34_RS03015 NCS2 family permease low > 48
Dechlorosoma suillum PS 0.45 Dsui_0451 hypothetical protein 0.52 Dsui_2705 permease low > 51
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 HMPREF1078_RS10320 NCS2 family permease low > 61
Methanococcus maripaludis JJ 0.29 MMJJ_RS09010 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 MMJJ_RS01440 NCS2 family permease low > 28
Methanococcus maripaludis S2 0.29 MMP_RS05365 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 MMP_RS03610 NCS2 family permease low > 25
Sinorhizobium meliloti 1021 0.28 SMc03781 rRNA large subunit methyltransferase 0.51 SM_b21281 xanthine uracil permease low > 103
Rhizobium sp. OAE497 0.27 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 ABIE40_RS25255 NCS2 family permease low > 107
Fusobacterium nucleatum SB010 0.27 HUW76_07715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 HUW76_04990 NCS2 family permease low > 35
Magnetospirillum magneticum AMB-1 0.26 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 AMB_RS22050 NCS2 family permease low > 64
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_03546 rRNA large subunit methyltransferase 0.40 CCNA_00186 guanine-hypoxanthine permease low > 67
Caulobacter crescentus NA1000 0.25 CCNA_03546 rRNA large subunit methyltransferase 0.40 CCNA_00186 guanine-hypoxanthine permease low > 66
Bifidobacterium breve UCC2003 0.23 BBR_RS19685 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 BBR_RS19145 NCS2 family permease low > 34
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU1254 conserved hypothetical protein (TIGR) 0.46 DVU2113 xanthine/uracil permease family protein (TIGR) low > 55

Not shown: 25 genomes with orthologs for HER17_RS15240 only; 1 genomes with orthologs for HER17_RS21740 only