Conservation of cofitness between HER17_RS04200 and HER17_RS12755 in Pectobacterium carotovorum WPP14

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE 1.0 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO 0.65 15
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF4831 Queuosine Biosynthesis QueE Radical SAM 0.91 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 78
Dickeya dadantii 3937 0.86 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE 0.91 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Escherichia coli ECRC101 0.85 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE 0.90 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 87
Escherichia coli ECRC98 0.85 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE 0.90 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 86
Escherichia coli ECRC102 0.85 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE 0.90 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli BW25113 0.85 b2777 ygcF hypothetical protein (NCBI) 0.90 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase 0.90 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO low > 73
Escherichia coli ECRC99 0.85 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE 0.90 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECRC62 0.85 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE 0.90 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 75
Klebsiella michiganensis M5al 0.85 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE 0.89 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO low > 92
Escherichia coli BL21 0.85 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis 0.90 ECD_00802 ribosomal protein S12 methylthiotransferase low > 61
Escherichia coli ECRC100 0.85 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.90 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 80
Escherichia coli ECOR27 0.85 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE 0.90 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 75
Escherichia coli ECOR38 0.85 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE 0.90 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 87
Escherichia fergusonii Becca 0.85 EFB2_01141 7-carboxy-7-deazaguanine synthase 0.90 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO low > 86
Escherichia coli Nissle 1917 0.85 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE 0.90 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO — —
Enterobacter sp. TBS_079 0.84 MPMX20_03645 7-carboxy-7-deazaguanine synthase 0.89 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO low > 85
Enterobacter asburiae PDN3 0.84 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 0.89 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO low > 76
Erwinia tracheiphila SCR3 0.84 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE 0.91 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Dickeya dianthicola ME23 0.79 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE 0.91 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE 0.91 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO low > 71
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE 0.80 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO low > 62
Shewanella sp. ANA-3 0.61 Shewana3_2163 radical activating enzyme (RefSeq) 0.77 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) low > 73
Shewanella oneidensis MR-1 0.60 SO2501 radical activating enzyme (NCBI ptt file) 0.77 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.58 MIT1002_01264 7-carboxy-7-deazaguanine synthase 0.75 MIT1002_01933 Ribosomal protein S12 methylthiotransferase RimO low > 70
Shewanella amazonensis SB2B 0.58 Sama_1825 radical activating enzyme (RefSeq) 0.77 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) low > 62
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS41925 7-carboxy-7-deazaguanine synthase QueE 0.68 QEN71_RS22185 30S ribosomal protein S12 methylthiotransferase RimO low > 153
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_4642 Organic radical activating enzymes 0.32 Echvi_0564 ribosomal protein S12 methylthiotransferase RimO low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_07135 7-carboxy-7-deazaguanine synthase QueE 0.32 CA264_15685 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1332 hypothetical protein 0.33 Synpcc7942_2512 hypothetical protein low > 38
Mucilaginibacter yixingensis YX-36 DSM 26809 0.23 ABZR88_RS09380 7-carboxy-7-deazaguanine synthase QueE 0.32 ABZR88_RS15425 30S ribosomal protein S12 methylthiotransferase RimO low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS08930 7-carboxy-7-deazaguanine synthase QueE 0.32 CA265_RS16365 30S ribosomal protein S12 methylthiotransferase RimO low > 88
Bacteroides thetaiotaomicron VPI-5482 0.22 BT4454 conserved hypothetical protein (NCBI ptt file) 0.32 BT0913 putative Fe-S oxidoreductase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.22 BACOVA_05261 radical SAM domain protein 0.32 BACOVA_00737 ribosomal protein S12 methylthiotransferase RimO low > 94
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS01505 7-cyano-7-deazaguanine reductase 0.69 BPHYT_RS09170 ribosomal protein S12 methylthiotransferase RimO — —
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS13885 radical SAM protein 0.31 HMPREF1181_RS16335 30S ribosomal protein S12 methylthiotransferase RimO low > 56
Paraburkholderia graminis OAS925 0.21 ABIE53_000397 7-carboxy-7-deazaguanine synthase 0.68 ABIE53_002068 ribosomal protein S12 methylthiotransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.20 H281DRAFT_02231 7-carboxy-7-deazaguanine synthase, Cx14CxxC type 0.68 H281DRAFT_00855 SSU ribosomal protein S12P methylthiotransferase low > 103
Magnetospirillum magneticum AMB-1 0.20 AMB_RS01255 7-carboxy-7-deazaguanine synthase 0.65 AMB_RS15345 30S ribosomal protein S12 methylthiotransferase RimO low > 64
Rhodospirillum rubrum S1H 0.19 Rru_A1959 Radical SAM (NCBI) 0.71 Rru_A2811 hypothetical protein (NCBI) low > 58
Phocaeicola vulgatus CL09T03C04 0.19 HMPREF1058_RS14880 radical SAM protein 0.32 HMPREF1058_RS04095 30S ribosomal protein S12 methylthiotransferase RimO low > 67
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS12145 7-carboxy-7-deazaguanine synthase 0.68 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO low > 80
Azospirillum brasilense Sp245 0.19 AZOBR_RS04155 radical SAM protein 0.72 AZOBR_RS14980 ribosomal protein S12 methylthiotransferase low > 97
Cupriavidus basilensis FW507-4G11 0.18 RR42_RS11390 7-cyano-7-deazaguanine reductase 0.68 RR42_RS07640 ribosomal protein S12 methylthiotransferase — —
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS10600 radical SAM protein 0.32 ABI39_RS17125 30S ribosomal protein S12 methylthiotransferase RimO low > 72
Rhodopseudomonas palustris CGA009 0.18 TX73_006110 7-carboxy-7-deazaguanine synthase 0.65 TX73_013865 30S ribosomal protein S12 methylthiotransferase RimO low > 86
Pseudomonas simiae WCS417 0.18 PS417_22405 7-carboxy-7-deazaguanine synthase 0.72 PS417_05880 ribosomal protein S12 methylthiotransferase low > 88
Pseudomonas fluorescens SBW25 0.18 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.72 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO low > 109
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.72 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO low > 109
Herbaspirillum seropedicae SmR1 0.18 HSERO_RS11035 7-cyano-7-deazaguanine reductase 0.66 HSERO_RS15005 ribosomal protein S12 methylthiotransferase low > 78
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS00750 radical SAM protein 0.30 HMPREF1078_RS01815 30S ribosomal protein S12 methylthiotransferase RimO low > 61
Ralstonia solanacearum GMI1000 0.17 RS_RS07295 7-carboxy-7-deazaguanine synthase 0.68 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO low > 80
Ralstonia solanacearum IBSBF1503 0.17 RALBFv3_RS00615 7-carboxy-7-deazaguanine synthase 0.68 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO — —
Pseudomonas sp. RS175 0.17 PFR28_03404 7-carboxy-7-deazaguanine synthase 0.73 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO low > 88
Ralstonia solanacearum PSI07 0.17 RPSI07_RS16890 7-carboxy-7-deazaguanine synthase 0.68 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO — —
Ralstonia solanacearum UW163 0.17 UW163_RS13945 7-carboxy-7-deazaguanine synthase 0.68 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO — —
Pseudomonas fluorescens FW300-N2C3 0.17 AO356_18065 7-carboxy-7-deazaguanine synthase 0.71 AO356_05600 ribosomal protein S12 methylthiotransferase RimO low > 104
Pseudomonas fluorescens FW300-N2E2 0.17 Pf6N2E2_5545 Queuosine Biosynthesis QueE Radical SAM 0.71 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 103
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_629 Queuosine Biosynthesis QueE Radical SAM 0.72 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 87
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU2658 conserved hypothetical protein (TIGR) 0.27 DVU3151 MiaB-like tRNA modifying enzyme YliG, TIGR01125 (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_1124 radical SAM domain protein (RefSeq) 0.27 DvMF_1701 MiaB-like tRNA modifying enzyme YliG (RefSeq) low > 51
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_03540 7-carboxy-7-deazaguanine synthase 0.72 AO353_16875 ribosomal protein S12 methylthiotransferase RimO low > 101
Variovorax sp. SCN45 0.17 GFF2577 7-carboxy-7-deazaguanine synthase (EC 4.3.99.3) 0.63 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) — —
Pseudomonas sp. S08-1 0.17 OH686_19175 7-carboxy-7-deazaguanine synthase 0.72 OH686_18875 ribosomal protein S12 methylthiotransferase RimO low > 80
Dyella japonica UNC79MFTsu3.2 0.16 ABZR86_RS10790 7-carboxy-7-deazaguanine synthase QueE 0.65 ABZR86_RS08100 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Rhodanobacter sp. FW510-T8 0.16 OKGIIK_01890 7-carboxy-7-deazaguanine synthase 0.64 OKGIIK_04755 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 52
Acidovorax sp. GW101-3H11 0.16 Ac3H11_3825 Queuosine Biosynthesis QueE Radical SAM 0.62 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase — —
Variovorax sp. OAS795 0.16 ABID97_RS07425 7-carboxy-7-deazaguanine synthase 0.62 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO — —
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_3210 Organic radical activating enzymes 0.64 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO low > 68
Pseudomonas putida KT2440 0.16 PP_1225 7-carboxy-7-deazaguanine synthase 0.72 PP_1197 ribosomal protein S12 methylthiotransferase low > 96
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_1861 Queuosine Biosynthesis QueE Radical SAM 0.72 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 87
Pseudomonas stutzeri RCH2 0.15 Psest_1505 Organic radical activating enzymes 0.72 Psest_2632 ribosomal protein S12 methylthiotransferase RimO low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.15 GFF4633 Queuosine Biosynthesis QueE Radical SAM 0.65 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 90
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_1418 Radical SAM 0.71 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_1418 Radical SAM 0.71 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase — —
Marinobacter adhaerens HP15 0.15 HP15_3815 organic radical activating enzyme 0.77 HP15_2459 MiaB-like tRNA modifying enzyme YliG low > 73

Not shown: 7 genomes with orthologs for HER17_RS04200 only; 11 genomes with orthologs for HER17_RS12755 only