Conservation of cofitness between GFF4179 and GFF717 in Sphingobium sp. HT1-2

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF4179 Phosphomannomutase (EC 5.4.2.8) 1.0 GFF717 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.77 6
Sphingomonas koreensis DSMZ 15582 0.67 Ga0059261_2456 Phosphomannomutase 0.78 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase — —
Azospirillum sp. SherDot2 0.58 MPMX19_05338 Phosphomannomutase/phosphoglucomutase 0.54 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN — —
Azospirillum brasilense Sp245 0.58 AZOBR_RS33725 phosphomannomutase 0.53 AZOBR_RS00800 50S rRNA methyltransferase low > 97
Magnetospirillum magneticum AMB-1 0.54 AMB_RS02965 phosphomannomutase/phosphoglucomutase 0.51 AMB_RS05715 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Rhodospirillum rubrum S1H 0.51 Rru_B0045 Phosphomannomutase (NCBI) 0.51 Rru_A3329 hypothetical protein (NCBI) low > 58
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_12530 phosphoglucomutase 0.36 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_4374 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2) 0.35 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_794 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2) 0.35 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_09235 phosphoglucomutase 0.35 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase low > 101
Pseudomonas sp. RS175 0.39 PFR28_04415 Phosphomannomutase/phosphoglucomutase 0.35 PFR28_00294 Dual-specificity RNA methyltransferase RlmN low > 88
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2122 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2) 0.35 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS29465 phosphomannomutase/phosphoglucomutase 0.35 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas sp. DMC3 0.39 GFF406 Phosphomannomutase/phosphoglucomutase 0.35 GFF4342 Dual-specificity RNA methyltransferase RlmN low > 89
Pseudomonas fluorescens SBW25 0.39 PFLU_RS29465 phosphomannomutase/phosphoglucomutase 0.35 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas putida KT2440 0.39 PP_5288 Phosphomannomutase/phosphoglucomutase 0.36 PP_0850 Dual-specificity RNA methyltransferase RlmN low > 96
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_00025 Phosphomannomutase/phosphoglucomutase 0.35 GEMAOFIL_04784 Dual-specificity RNA methyltransferase RlmN low > 96
Pseudomonas simiae WCS417 0.38 PS417_27785 phosphoglucomutase 0.35 PS417_23160 50S rRNA methyltransferase low > 88
Variovorax sp. SCN45 0.38 GFF6532 Phosphoglucomutase (EC 5.4.2.2) @ Phosphomannomutase (EC 5.4.2.8) 0.34 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) low > 127
Variovorax sp. OAS795 0.38 ABID97_RS21385 phosphomannomutase/phosphoglucomutase 0.34 ABID97_RS14210 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 91
Acidovorax sp. GW101-3H11 0.38 Ac3H11_2215 Phosphomannomutase (EC 5.4.2.8) 0.34 Ac3H11_1791 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Pseudomonas segetis P6 0.37 ACVTMO_RS00120 algC phosphomannomutase/phosphoglucomutase 0.35 ACVTMO_RS07505 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0219 phosphomannomutase 0.36 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0219 phosphomannomutase 0.36 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS08745 phosphomannomutase/phosphoglucomutase 0.36 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Dechlorosoma suillum PS 0.37 Dsui_3344 phosphomannomutase 0.36 Dsui_3145 23S rRNA m2A2503 methyltransferase — —
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS15690 phosphoglucomutase 0.34 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS02355 phosphoglucomutase 0.35 HSERO_RS14810 50S rRNA methyltransferase — —
Ralstonia solanacearum GMI1000 0.36 RS_RS03475 phosphomannomutase/phosphoglucomutase 0.36 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Ralstonia solanacearum UW163 0.36 UW163_RS00870 phosphomannomutase/phosphoglucomutase 0.36 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS12695 phosphomannomutase/phosphoglucomutase 0.36 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Paraburkholderia graminis OAS925 0.36 ABIE53_001189 phosphomannomutase/phosphoglucomutase 0.35 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS25415 phosphomannomutase/phosphoglucomutase 0.35 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS04470 phosphoglucomutase 0.36 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN — —
Desulfovibrio vulgaris Hildenborough JW710 0.36 DVU0685 rfbB phosphomannomutase (TIGR) 0.29 DVU2904 radical SAM enzyme, Cfr family (TIGR) — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS20565 phosphomannomutase/phosphoglucomutase 0.36 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_00078 phosphomannomutase 0.36 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF5772 Phosphomannomutase (EC 5.4.2.8) 0.34 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 90
Methylophilus sp. DMC18 0.35 GFF69 Phosphomannomutase/phosphoglucomutase 0.35 GFF1191 Dual-specificity RNA methyltransferase RlmN low > 43
Desulfovibrio vulgaris Miyazaki F 0.34 DvMF_2673 Phosphomannomutase (RefSeq) 0.28 DvMF_1431 radical SAM enzyme, Cfr family (RefSeq) low > 51
Castellaniella sp019104865 MT123 0.32 ABCV34_RS09280 phosphomannomutase/phosphoglucomutase 0.35 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Acinetobacter radioresistens SK82 0.25 MPMX26_02414 Phosphomannomutase/phosphoglucomutase 0.33 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN low > 36
Acinetobacter baumannii LAC-4 0.24 RR41_RS14850 phosphomannomutase/phosphoglucomutase 0.31 RR41_RS16460 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 55
Dickeya dadantii 3937 0.23 DDA3937_RS18660 phosphomannomutase/phosphoglucomutase 0.34 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Dickeya dianthicola 67-19 0.23 HGI48_RS18590 phosphomannomutase CpsG 0.33 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 71
Dickeya dianthicola ME23 0.23 DZA65_RS19725 phosphomannomutase/phosphoglucomutase 0.33 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Escherichia coli ECRC99 0.22 KEDOAH_03780 cpsG colanic acid biosynthesis phosphomannomutase CpsG 0.34 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN — —
Escherichia coli ECRC100 0.22 OKFHMN_24370 cpsG colanic acid biosynthesis phosphomannomutase CpsG 0.34 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 79
Escherichia coli ECRC101 0.22 MCAODC_20570 cpsG colanic acid biosynthesis phosphomannomutase CpsG 0.34 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Escherichia coli ECRC102 0.22 NIAGMN_22315 cpsG colanic acid biosynthesis phosphomannomutase CpsG 0.34 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN — —
Escherichia coli ECRC98 0.22 JDDGAC_28480 cpsG colanic acid biosynthesis phosphomannomutase CpsG 0.34 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Escherichia coli BL21 0.22 ECD_01954 phosphomannomutase 0.34 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC62 0.22 BNILDI_14615 cpsG colanic acid biosynthesis phosphomannomutase CpsG 0.34 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Escherichia coli ECOR27 0.22 NOLOHH_15700 cpsG colanic acid biosynthesis phosphomannomutase CpsG 0.34 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 76
Pantoea agglomerans CFBP13505 P0401 0.22 PagCFBP13505_RS01110 phosphomannomutase CpsG 0.34 PagCFBP13505_RS14930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Escherichia coli Nissle 1917 0.22 ECOLIN_RS12070 colanic acid biosynthesis phosphomannomutase CpsG 0.34 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 55
Escherichia coli ECOR38 0.22 HEPCGN_03070 cpsG colanic acid biosynthesis phosphomannomutase CpsG 0.34 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 88
Vibrio cholerae E7946 ATCC 55056 0.22 CSW01_01275 phosphomannomutase/phosphoglucomutase 0.31 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 62
Escherichia fergusonii Becca 0.22 EFB2_01806 Phosphomannomutase/phosphoglucomutase 0.34 EFB2_01373 Dual-specificity RNA methyltransferase RlmN low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF3880 Phosphomannomutase (EC 5.4.2.8) 0.34 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 78
Escherichia coli BW25113 0.22 b2048 cpsG phosphomannomutase (NCBI) 0.34 b2517 yfgB predicted enzyme (NCBI) low > 76
Enterobacter sp. TBS_079 0.22 MPMX20_03030 Phosphomannomutase/phosphoglucomutase 0.35 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN low > 85
Pseudomonas sp. BP01 0.21 JOY50_RS15915 phosphomannomutase 0.36 JOY50_RS22780 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 84
Enterobacter asburiae PDN3 0.21 EX28DRAFT_0507 Phosphomannomutase 0.35 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 76
Pseudomonas sp. SVBP6 0.21 COO64_RS06650 phosphomannomutase 0.36 COO64_RS03935 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 93
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_01667 Phosphomannomutase/phosphoglucomutase 0.34 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN low > 74
Rahnella sp. WP5 0.20 EX31_RS02875 phosphomannomutase CpsG 0.34 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 89
Serratia liquefaciens MT49 0.20 IAI46_08075 phosphomannomutase CpsG 0.34 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Pectobacterium carotovorum WPP14 0.20 HER17_RS14515 phosphomannomutase CpsG 0.33 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Phaeobacter inhibens DSM 17395 0.20 PGA1_c24340 phosphomannomutase/phosphoglucomutase AlgC 0.52 PGA1_c36240 ribosomal RNA large subunit methyltransferase N — —
Rhodopseudomonas palustris CGA009 0.20 TX73_017170 phosphomannomutase/phosphoglucomutase 0.54 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 86
Xanthobacter sp. DMC5 0.19 GFF3900 Phosphomannomutase/phosphoglucomutase 0.50 GFF1781 Dual-specificity RNA methyltransferase RlmN — —
Dinoroseobacter shibae DFL-12 0.19 Dshi_1900 Phosphomannomutase (RefSeq) 0.53 Dshi_3311 radical SAM enzyme, Cfr family (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.19 SM_b21081 phosphoglucomutase phosphomannomutase 0.51 SMc03831 hypothetical protein low > 103
Caulobacter crescentus NA1000 0.19 CCNA_02347 phosphomannomutase/phosphoglucomutase 0.49 CCNA_00133 radical SAM family enzyme low > 66
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_02347 phosphomannomutase/phosphoglucomutase 0.49 CCNA_00133 radical SAM family enzyme low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13070 phosphomannomutase/phosphoglucomutase 0.47 A4249_RS12865 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 48
Alteromonas macleodii MIT1002 0.18 MIT1002_01940 Phosphomannomutase/phosphoglucomutase 0.35 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN low > 70
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS00205 phosphoglucosamine mutase 0.25 ABI39_RS12945 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 72
Bacteroides ovatus ATCC 8483 0.14 BACOVA_01208 phosphoglucosamine mutase 0.26 BACOVA_05204 23S rRNA m2A2503 methyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS07690 phosphoglucosamine mutase 0.25 HMPREF1058_RS17025 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Bacteroides thetaiotaomicron VPI-5482 0.14 BT3950 phosphoglucomutase/phosphomannomutase (NCBI ptt file) 0.25 BT4372 conserved hypothetical protein (NCBI ptt file) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.14 ABZR88_RS14070 phosphoglucosamine mutase 0.25 ABZR88_RS00655 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1178 phosphoglucosamine mutase 0.26 Echvi_0755 23S rRNA m2A2503 methyltransferase — —
Bacteroides stercoris CC31F 0.14 HMPREF1181_RS06485 phosphoglucosamine mutase 0.27 HMPREF1181_RS05775 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Parabacteroides merdae CL09T00C40 0.13 HMPREF1078_RS00820 phosphoglucosamine mutase 0.26 HMPREF1078_RS14530 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Cellulophaga baltica 18 0.12 M666_RS15505 phosphoglucosamine mutase 0.26 M666_RS08290 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Pedobacter sp. GW460-11-11-14-LB5 0.12 CA265_RS13185 phosphoglucosamine mutase 0.27 CA265_RS19115 23S rRNA (adenine(2503)-C(2))-methyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_15145 phosphoglucosamine mutase 0.27 CA264_15910 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —

Not shown: 3 genomes with orthologs for GFF4179 only; 32 genomes with orthologs for GFF717 only