| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF122 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 1.0 | GFF630 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.85 | 13 |
| Escherichia coli Nissle 1917 | 0.97 | ECOLIN_RS00640 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.90 | ECOLIN_RS19360 | | 3-dehydroquinate synthase | low | > 52 |
| Escherichia coli ECRC101 | 0.97 | MCAODC_01015 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.91 | MCAODC_07645 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECRC62 | 0.97 | BNILDI_08765 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.91 | BNILDI_02615 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECRC101 | 0.97 | OKFHMN_10500 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.91 | OKFHMN_17115 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECRC99 | 0.97 | KEDOAH_17655 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.91 | KEDOAH_11025 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECRC98 | 0.97 | JDDGAC_14095 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.91 | JDDGAC_20745 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECRC102 | 0.97 | NIAGMN_08350 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.91 | NIAGMN_14885 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECOR27 | 0.97 | NOLOHH_02845 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.91 | NOLOHH_08905 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli BW25113 | 0.97 | b0114 | aceE | pyruvate dehydrogenase subunit E1 (NCBI) | 0.91 | b3389 | aroB | 3-dehydroquinate synthase (NCBI) | 0.40 | 69 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.97 | OHPLBJKB_03547 | | Pyruvate dehydrogenase E1 component | 0.91 | OHPLBJKB_00314 | | 3-dehydroquinate synthase | — | — |
| Escherichia coli BL21 | 0.97 | ECD_00113 | | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding | 0.91 | ECD_03241 | | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECOR38 | 0.97 | HEPCGN_08480 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.91 | HEPCGN_15935 | aroB | 3-dehydroquinate synthase | low | > 85 |
| Escherichia fergusonii Becca | 0.97 | EFB2_03931 | | Pyruvate dehydrogenase E1 component | 0.91 | EFB2_00439 | | 3-dehydroquinate synthase | low | > 86 |
| Enterobacter asburiae PDN3 | 0.97 | EX28DRAFT_3710 | | pyruvate dehydrogenase E1 component, homodimeric type | 0.87 | EX28DRAFT_4153 | | 3-dehydroquinate synthase (EC 4.2.3.4) | low | > 76 |
| Klebsiella michiganensis M5al | 0.96 | BWI76_RS04880 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.85 | BWI76_RS26085 | | 3-dehydroquinate synthase | — | — |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_00807 | | Pyruvate dehydrogenase E1 component | 0.87 | MPMX20_04278 | | 3-dehydroquinate synthase | 0.55 | 9 |
| Pectobacterium carotovorum WPP14 | 0.93 | HER17_RS03290 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.80 | HER17_RS01780 | | 3-dehydroquinate synthase | — | — |
| Erwinia tracheiphila SCR3 | 0.92 | LU632_RS03080 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.81 | LU632_RS22865 | aroB | 3-dehydroquinate synthase | — | — |
| Dickeya dianthicola ME23 | 0.92 | DZA65_RS19000 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.80 | DZA65_RS20760 | | 3-dehydroquinate synthase | — | — |
| Dickeya dadantii 3937 | 0.92 | DDA3937_RS17925 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.80 | DDA3937_RS19545 | | 3-dehydroquinate synthase | — | — |
| Dickeya dianthicola 67-19 | 0.92 | HGI48_RS17850 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.80 | HGI48_RS19675 | | 3-dehydroquinate synthase | — | — |
| Pantoea sp. MT58 | 0.92 | IAI47_15810 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.83 | IAI47_01895 | | 3-dehydroquinate synthase | — | — |
| Rahnella sp. WP5 | 0.92 | EX31_RS03480 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.84 | EX31_RS04720 | | 3-dehydroquinate synthase | — | — |
| Serratia liquefaciens MT49 | 0.91 | IAI46_21325 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.81 | IAI46_23700 | | 3-dehydroquinate synthase | 0.72 | 34 |
| Vibrio cholerae E7946 ATCC 55056 | 0.73 | CSW01_12220 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.63 | CSW01_13300 | | 3-dehydroquinate synthase | — | — |
| Shewanella amazonensis SB2B | 0.73 | Sama_0375 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | 0.63 | Sama_3367 | | 3-dehydroquinate synthase (RefSeq) | 0.44 | 25 |
| Shewanella sp. ANA-3 | 0.69 | Shewana3_0426 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | 0.63 | Shewana3_3893 | aroB | 3-dehydroquinate synthase (RefSeq) | 0.55 | 59 |
| Shewanella loihica PV-4 | 0.69 | Shew_3431 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | 0.62 | Shew_0214 | | 3-dehydroquinate synthase (RefSeq) | 0.60 | 30 |
| Shewanella oneidensis MR-1 | 0.69 | SO0424 | aceE | pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (NCBI ptt file) | 0.63 | SO0287 | aroB | 3-dehydroquinate synthase (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.66 | MIT1002_03003 | | Pyruvate dehydrogenase E1 component | 0.61 | MIT1002_00447 | | 3-dehydroquinate synthase | — | — |
| Kangiella aquimarina DSM 16071 | 0.64 | B158DRAFT_2144 | | pyruvate dehydrogenase E1 component, homodimeric type | 0.46 | B158DRAFT_0764 | | 3-dehydroquinate synthase (EC 4.2.3.4) | low | > 40 |
| Dinoroseobacter shibae DFL-12 | 0.61 | Dshi_1968 | | 2-oxo-acid dehydrogenase E1 subunit, homodimeric type (RefSeq) | 0.38 | Dshi_1608 | | 3-dehydroquinate synthase (RefSeq) | — | — |
| Acidovorax sp. GW101-3H11 | 0.61 | Ac3H11_4093 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.52 | Ac3H11_4705 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.71 | 39 |
| Pseudomonas putida KT2440 | 0.60 | PP_0339 | | Pyruvate dehydrogenase E1 component | 0.56 | PP_5078 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.60 | Pf1N1B4_1476 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.56 | Pf1N1B4_1537 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.60 | PfGW456L13_214 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.56 | PfGW456L13_275 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.60 | Psyr_0518 | | 2-oxo-acid dehydrogenase E1 component homodimeric type | 0.54 | Psyr_0409 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.60 | Psyr_0518 | | 2-oxo-acid dehydrogenase E1 component homodimeric type | 0.54 | Psyr_0409 | | 3-dehydroquinate synthase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.60 | RR42_RS07365 | | pyruvate dehydrogenase | 0.52 | RR42_RS19005 | | 3-dehydroquinate synthase | 0.40 | 18 |
| Ralstonia solanacearum PSI07 | 0.60 | RPSI07_RS15815 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.51 | RPSI07_RS10300 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas sp. S08-1 | 0.60 | OH686_09710 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.55 | OH686_10015 | | 3-dehydroquinate synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.60 | ABZR87_RS13470 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.51 | ABZR87_RS02590 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas sp. RS175 | 0.60 | PFR28_05061 | | Pyruvate dehydrogenase E1 component | 0.55 | PFR28_05013 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.60 | Pf6N2E2_3674 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.55 | Pf6N2E2_3754 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.60 | AO356_08960 | | pyruvate dehydrogenase | 0.56 | AO356_09385 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.60 | PFLU_RS02275 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.56 | PFLU_RS02030 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.60 | PFLU_RS02275 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.56 | PFLU_RS02030 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.60 | RS_RS08055 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.51 | RS_RS14880 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas simiae WCS417 | 0.60 | PS417_02220 | | pyruvate dehydrogenase | 0.56 | PS417_01985 | | 3-dehydroquinate synthase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.60 | GFF4890 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.51 | GFF1331 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.68 | 8 |
| Pseudomonas stutzeri RCH2 | 0.60 | Psest_0448 | | pyruvate dehydrogenase E1 component, homodimeric type | 0.55 | Psest_3713 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS01670 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.51 | RALBFv3_RS06935 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_12865 | | pyruvate dehydrogenase | 0.55 | AO353_12505 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS14980 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.51 | UW163_RS06680 | | 3-dehydroquinate synthase | — | — |
| Variovorax sp. SCN45 | 0.59 | GFF967 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.49 | GFF5325 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.76 | 8 |
| Dechlorosoma suillum PS | 0.59 | Dsui_1578 | | pyruvate dehydrogenase E1 component, homodimeric type | 0.54 | Dsui_1095 | | 3-dehydroquinate synthase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.58 | H281DRAFT_00466 | | pyruvate dehydrogenase E1 component | 0.52 | H281DRAFT_05615 | | 3-dehydroquinate synthase | — | — |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_002793 | | pyruvate dehydrogenase E1 component | 0.53 | ABIE53_003740 | | 3-dehydroquinate synthase | — | — |
| Burkholderia phytofirmans PsJN | 0.58 | BPHYT_RS12840 | | pyruvate dehydrogenase | 0.52 | BPHYT_RS17885 | | 3-dehydroquinate synthase | 0.64 | 26 |
| Lysobacter sp. OAE881 | 0.58 | ABIE51_RS18795 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.44 | ABIE51_RS16100 | | 3-dehydroquinate synthase | — | — |
| Castellaniella sp019104865 MT123 | 0.57 | ABCV34_RS04160 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.50 | ABCV34_RS12705 | | 3-dehydroquinate synthase | — | — |
| Acinetobacter radioresistens SK82 | 0.57 | MPMX26_02925 | | Pyruvate dehydrogenase E1 component | 0.52 | MPMX26_02810 | | 3-dehydroquinate synthase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.57 | QEN71_RS05725 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.53 | QEN71_RS28035 | | 3-dehydroquinate synthase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.57 | Xcc-8004.754.1 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | 0.42 | Xcc-8004.1615.1 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Marinobacter adhaerens HP15 | 0.57 | HP15_3046 | | pyruvate dehydrogenase subunit E1 | 0.55 | HP15_480 | | 3-dehydroquinate synthase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.57 | ABZR86_RS12410 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.42 | ABZR86_RS10480 | | 3-dehydroquinate synthase | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_12700 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.41 | OKGIIK_11185 | aroB | 3-dehydroquinate synthase | — | — |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS10880 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.41 | LRK55_RS04085 | | 3-dehydroquinate synthase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS11175 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.41 | LRK54_RS04310 | | 3-dehydroquinate synthase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.07 | CCNA_01263 | | pyruvate dehydrogenase E1 component | 0.42 | CCNA_03104 | | 3-dehydroquinate synthase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.07 | CCNA_01263 | | pyruvate dehydrogenase E1 component | 0.42 | CCNA_03104 | | 3-dehydroquinate synthase | low | > 66 |
| Phaeobacter inhibens DSM 17395 | 0.07 | PGA1_c16590 | | transketolase-like protein | 0.39 | PGA1_c14100 | | 3-dehydroquinate synthase AroB | — | — |
| Azospirillum sp. SherDot2 | 0.07 | MPMX19_03172 | | Pyruvate dehydrogenase E1 component | 0.39 | MPMX19_02639 | | 3-dehydroquinate synthase | — | — |
Not shown: 3 genomes with orthologs for GFF122 only; 17 genomes with orthologs for GFF630 only