| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_24625 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 1.0 | PS417_02975 | | 3-dehydroquinate dehydratase | 0.23 | 12 |
| Pseudomonas fluorescens SBW25 | 0.99 | PFLU_RS26555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.99 | PFLU_RS03050 | | type II 3-dehydroquinate dehydratase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.99 | PFLU_RS26555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.99 | PFLU_RS03050 | | type II 3-dehydroquinate dehydratase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.98 | AO353_06375 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.92 | AO353_13685 | | 3-dehydroquinate dehydratase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.98 | Pf6N2E2_5018 | | tRNA-i(6)A37 methylthiotransferase | 0.92 | Pf6N2E2_3510 | | 3-dehydroquinate dehydratase II (EC 4.2.1.10) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.97 | PfGW456L13_1380 | | tRNA-i(6)A37 methylthiotransferase | 0.93 | PfGW456L13_50 | | 3-dehydroquinate dehydratase II (EC 4.2.1.10) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.97 | Pf1N1B4_2712 | | tRNA-i(6)A37 methylthiotransferase | 0.92 | Pf1N1B4_1307 | | 3-dehydroquinate dehydratase II (EC 4.2.1.10) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.97 | AO356_15410 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.94 | AO356_08185 | | 3-dehydroquinate dehydratase | — | — |
| Pseudomonas sp. RS175 | 0.97 | PFR28_03848 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.92 | PFR28_05222 | | 3-dehydroquinate dehydratase 1 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.95 | Psyr_4345 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.91 | Psyr_4399 | | 3-dehydroquinate dehydratase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.95 | Psyr_4345 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.91 | Psyr_4399 | | 3-dehydroquinate dehydratase | — | — |
| Pseudomonas stutzeri RCH2 | 0.83 | Psest_0532 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.87 | Psest_1021 | | 3-dehydroquinate dehydratase, type II | — | — |
| Pseudomonas sp. S08-1 | 0.83 | OH686_09215 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.92 | OH686_07585 | | 3-dehydroquinate dehydratase, type II | low | > 80 |
| Marinobacter adhaerens HP15 | 0.73 | HP15_2466 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.65 | HP15_3220 | | dehydroquinase, class II | — | — |
| Kangiella aquimarina DSM 16071 | 0.71 | B158DRAFT_0099 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.59 | B158DRAFT_0157 | | 3-dehydroquinate dehydratase (EC 4.2.1.10) | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.68 | ABZR86_RS09895 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.64 | ABZR86_RS17085 | | type II 3-dehydroquinate dehydratase | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.68 | HER17_RS15165 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.57 | HER17_RS20195 | | type II 3-dehydroquinate dehydratase | low | > 75 |
| Dickeya dadantii 3937 | 0.67 | DDA3937_RS06250 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.55 | DDA3937_RS01405 | | type II 3-dehydroquinate dehydratase | — | — |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS06640 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.54 | DZA65_RS01385 | | type II 3-dehydroquinate dehydratase | — | — |
| Dickeya dianthicola 67-19 | 0.67 | HGI48_RS06295 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.54 | HGI48_RS01325 | | type II 3-dehydroquinate dehydratase | — | — |
| Pantoea sp. MT58 | 0.67 | IAI47_13945 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.59 | IAI47_02415 | | type II 3-dehydroquinate dehydratase | — | — |
| Rhodanobacter denitrificans MT42 | 0.67 | LRK55_RS13465 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.62 | LRK55_RS06540 | | type II 3-dehydroquinate dehydratase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.67 | LRK54_RS13750 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.62 | LRK54_RS06795 | | type II 3-dehydroquinate dehydratase | low | > 59 |
| Erwinia tracheiphila SCR3 | 0.67 | LU632_RS16305 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.56 | LU632_RS21475 | aroQ | type II 3-dehydroquinate dehydratase | — | — |
| Shewanella amazonensis SB2B | 0.66 | Sama_2575 | | tRNA-i(6)A37 modification enzyme MiaB (RefSeq) | 0.60 | Sama_3194 | | 3-dehydroquinate dehydratase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.66 | Shewana3_1008 | | tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) | 0.58 | Shewana3_0511 | | 3-dehydroquinate dehydratase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.66 | SO1181 | miaB | tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) | 0.58 | SO0512 | aroQ | 3-dehydroquinate dehydratase, type II (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.66 | MIT1002_01480 | | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB | 0.62 | MIT1002_03941 | | 3-dehydroquinate dehydratase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.66 | Xcc-8004.2224.1 | | tRNA-i(6)A37 methylthiotransferase | 0.67 | Xcc-8004.681.1 | | 3-dehydroquinate dehydratase II (EC 4.2.1.10) | — | — |
| Serratia liquefaciens MT49 | 0.66 | IAI46_06025 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.58 | IAI46_22745 | | type II 3-dehydroquinate dehydratase | — | — |
| Lysobacter sp. OAE881 | 0.66 | ABIE51_RS15455 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.66 | ABIE51_RS17715 | | type II 3-dehydroquinate dehydratase | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.66 | OKGIIK_02990 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.63 | OKGIIK_16835 | aroQ | type II 3-dehydroquinate dehydratase | low | > 52 |
| Enterobacter asburiae PDN3 | 0.65 | EX28DRAFT_2310 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.63 | EX28DRAFT_3306 | | 3-dehydroquinate dehydratase (EC 4.2.1.10) | — | — |
| Shewanella loihica PV-4 | 0.65 | Shew_2923 | | tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) | 0.61 | Shew_3363 | | 3-dehydroquinate dehydratase, type II (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.65 | CSW01_04915 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.62 | CSW01_01515 | | type II 3-dehydroquinate dehydratase | low | > 62 |
| Enterobacter sp. TBS_079 | 0.65 | MPMX20_01311 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.63 | MPMX20_04162 | | 3-dehydroquinate dehydratase | low | > 85 |
| Dechlorosoma suillum PS | 0.64 | Dsui_1194 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.64 | Dsui_0387 | | 3-dehydroquinate dehydratase, type II | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.64 | QEN71_RS02195 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.61 | QEN71_RS27160 | | type II 3-dehydroquinate dehydratase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.64 | BPHYT_RS16535 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.65 | BPHYT_RS17005 | | 3-dehydroquinate dehydratase | — | — |
| Rahnella sp. WP5 | 0.64 | EX31_RS23205 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.58 | EX31_RS12215 | | type II 3-dehydroquinate dehydratase | low | > 89 |
| Castellaniella sp019104865 MT123 | 0.64 | ABCV34_RS15345 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | ABCV34_RS11545 | | type II 3-dehydroquinate dehydratase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.63 | ABZR87_RS07780 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.63 | ABZR87_RS01645 | | type II 3-dehydroquinate dehydratase | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.63 | H281DRAFT_04239 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.65 | H281DRAFT_06285 | | 3-dehydroquinate dehydratase | low | > 103 |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS02645 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.62 | RS_RS13930 | | 3-dehydroquinate dehydratase 1 | — | — |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS21380 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.63 | RPSI07_RS11260 | | type II 3-dehydroquinate dehydratase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS11825 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.64 | RALBFv3_RS05985 | | type II 3-dehydroquinate dehydratase | — | — |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS01760 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.64 | UW163_RS07640 | | type II 3-dehydroquinate dehydratase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.62 | RR42_RS02855 | | dimethylallyladenosine tRNA methylthiotransferase | 0.67 | RR42_RS17690 | | 3-dehydroquinate dehydratase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS03615 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.51 | HSERO_RS01935 | | 3-dehydroquinate dehydratase | low | > 78 |
| Acinetobacter radioresistens SK82 | 0.61 | MPMX26_02667 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.63 | MPMX26_01371 | | 3-dehydroquinate dehydratase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.60 | GFF613 | | tRNA-i(6)A37 methylthiotransferase | 0.43 | GFF5233 | | 3-dehydroquinate dehydratase II (EC 4.2.1.10) | — | — |
| Variovorax sp. SCN45 | 0.59 | GFF7320 | | tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) | 0.63 | GFF7499 | | 3-dehydroquinate dehydratase II (EC 4.2.1.10) | — | — |
| Synechococcus elongatus PCC 7942 | 0.37 | Synpcc7942_2374 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.52 | Synpcc7942_0915 | aroQ | 3-dehydroquinate dehydratase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.33 | BT3195 | | conserved hypothetical protein (NCBI ptt file) | 0.45 | BT2842 | | 3-dehydroquinate dehydratase (NCBI ptt file) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_02895 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.46 | BACOVA_02122 | | 3-dehydroquinate dehydratase, type II | low | > 94 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.32 | ABZR88_RS18330 | | MiaB/RimO family radical SAM methylthiotransferase | 0.45 | ABZR88_RS10225 | | type II 3-dehydroquinate dehydratase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU0984 | miaB | tRNA-i(6)A37 modification enzyme MiaB (TIGR) | 0.38 | DVU1665 | aroQ | 3-dehydroquinate dehydratase, type II (TIGR) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.32 | HMPREF1078_RS17135 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.43 | HMPREF1078_RS04700 | | type II 3-dehydroquinate dehydratase | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.31 | HMPREF1058_RS11280 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.45 | HMPREF1058_RS09675 | | type II 3-dehydroquinate dehydratase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.31 | ABI39_RS05650 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.45 | ABI39_RS07005 | | type II 3-dehydroquinate dehydratase | low | > 72 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.31 | Echvi_2376 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.42 | Echvi_1810 | | 3-dehydroquinate dehydratase, type II | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.31 | DvMF_1330 | | RNA modification enzyme, MiaB family (RefSeq) | 0.38 | DvMF_0373 | | 3-dehydroquinate dehydratase (RefSeq) | — | — |
Not shown: 40 genomes with orthologs for PS417_24625 only; 2 genomes with orthologs for PS417_02975 only