Conservation of cofitness between PS417_03300 and PS417_24705 in Pseudomonas simiae WCS417

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_03300 alanine acetyltransferase 1.0 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.20 20
Pseudomonas fluorescens SBW25 0.99 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase 1.00 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase 1.00 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.32 7
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_14585 ribosomal-protein-alanine acetyltransferase 0.91 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_1551 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) 0.91 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_5188 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) 0.90 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 103
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_2891 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) 0.91 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_16260 ribosomal-protein-alanine acetyltransferase 0.90 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas sp. RS175 0.92 PFR28_03681 [Ribosomal protein S18]-alanine N-acetyltransferase 0.90 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas putida KT2440 0.83 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.91 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.47 3
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase 0.90 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase 0.90 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas stutzeri RCH2 0.80 Psest_1058 ribosomal-protein-alanine acetyltransferase 0.79 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Pseudomonas sp. S08-1 0.74 OH686_08035 ribosomal-protein-alanine acetyltransferase 0.75 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.4455.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) 0.44 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS04455 ribosomal protein S18-alanine N-acetyltransferase 0.48 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Dechlorosoma suillum PS 0.42 Dsui_2404 ribosomal-protein-alanine acetyltransferase 0.48 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Marinobacter adhaerens HP15 0.40 HP15_540 ribosomal-protein-alanine acetyltransferase 0.53 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS10720 alanine acetyltransferase 0.41 HSERO_RS21530 cytochrome C550 low > 78
Paraburkholderia graminis OAS925 0.38 ABIE53_002532 ribosomal-protein-alanine N-acetyltransferase 0.39 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Serratia liquefaciens MT49 0.38 IAI46_02870 ribosomal protein S18-alanine N-acetyltransferase 0.43 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Pectobacterium carotovorum WPP14 0.38 HER17_RS18090 ribosomal protein S18-alanine N-acetyltransferase 0.45 HER17_RS12545 serine hydrolase low > 75
Dickeya dianthicola 67-19 0.37 HGI48_RS03330 ribosomal protein S18-alanine N-acetyltransferase 0.43 HGI48_RS09435 serine hydrolase low > 71
Acidovorax sp. GW101-3H11 0.37 Ac3H11_667 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) 0.35 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Dickeya dianthicola ME23 0.37 DZA65_RS03375 ribosomal protein S18-alanine N-acetyltransferase 0.43 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_03460 ribosomal-protein-alanine N-acetyltransferase 0.46 CSW01_04845 D-alanyl-D-alanine carboxypeptidase low > 62
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS06290 ribosomal protein S18-alanine N-acetyltransferase 0.39 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein low > 153
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS12055 acyltransferase 0.41 RR42_RS01680 cytochrome C550 low > 128
Rahnella sp. WP5 0.36 EX31_RS04110 ribosomal protein S18-alanine N-acetyltransferase 0.43 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Dickeya dadantii 3937 0.35 DDA3937_RS03180 ribosomal protein S18-alanine N-acetyltransferase 0.43 DDA3937_RS09420 serine hydrolase low > 74
Shewanella amazonensis SB2B 0.35 Sama_2596 ribosomal-protein-alanine acetyltransferase (RefSeq) 0.43 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Pantoea sp. MT58 0.35 IAI47_16365 ribosomal protein S18-alanine N-acetyltransferase 0.43 IAI47_13090 serine hydrolase low > 76
Escherichia coli ECRC99 0.35 KEDOAH_16855 rimI ribosomal protein S18-alanine N-acetyltransferase 0.42 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BL21 0.35 ECD_04248 ribosomal-protein-S18-alanine N-acetyltransferase 0.43 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a low > 60
Escherichia coli ECRC102 0.35 NIAGMN_09140 rimI ribosomal protein S18-alanine N-acetyltransferase 0.42 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.35 OKFHMN_11290 rimI ribosomal protein S18-alanine N-acetyltransferase 0.42 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC98 0.35 JDDGAC_14885 rimI ribosomal protein S18-alanine N-acetyltransferase 0.42 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli Nissle 1917 0.35 ECOLIN_RS25100 ribosomal protein S18-alanine N-acetyltransferase 0.42 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.35 MCAODC_01805 rimI ribosomal protein S18-alanine N-acetyltransferase 0.42 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BW25113 0.35 b4373 rimI ribosomal-protein-alanine N-acetyltransferase (NCBI) 0.43 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF2766 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) 0.37 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 90
Escherichia fergusonii Becca 0.35 EFB2_04074 [Ribosomal protein S18]-alanine N-acetyltransferase 0.43 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_03689 Ribosomal-protein-alanine acetyltransferase 0.43 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Escherichia coli ECRC62 0.35 BNILDI_07990 rimI ribosomal protein S18-alanine N-acetyltransferase 0.42 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Acinetobacter radioresistens SK82 0.34 MPMX26_02428 [Ribosomal protein S18]-alanine N-acetyltransferase 0.44 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA low > 36
Escherichia coli ECOR27 0.34 NOLOHH_03610 rimI ribosomal protein S18-alanine N-acetyltransferase 0.42 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 57
Escherichia coli ECOR38 0.34 HEPCGN_09295 rimI ribosomal protein S18-alanine N-acetyltransferase 0.42 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 85
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS00190 ribosomal-protein-alanine N-acetyltransferase 0.41 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum PSI07 0.33 RPSI07_RS17290 ribosomal-protein-alanine N-acetyltransferase 0.42 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum UW163 0.33 UW163_RS13520 ribosomal-protein-alanine N-acetyltransferase 0.41 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Klebsiella michiganensis M5al 0.33 BWI76_RS04090 ribosomal-protein-alanine N-acetyltransferase RimI 0.44 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Shewanella sp. ANA-3 0.33 Shewana3_0987 SSU ribosomal protein S18P alanine acetyltransferase (RefSeq) 0.44 Shewana3_0991 penicillin-binding protein 6 (RefSeq) — —
Enterobacter asburiae PDN3 0.33 EX28DRAFT_3581 ribosomal-protein-alanine acetyltransferase 0.42 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase low > 76
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS12265 alanine acetyltransferase 0.40 BPHYT_RS02415 cytochrome C550 low > 109
Variovorax sp. SCN45 0.32 GFF5521 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128) 0.44 GFF1728 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 127
Variovorax sp. OAS795 0.32 ABID97_RS01660 ribosomal protein S18-alanine N-acetyltransferase 0.37 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_00584 [SSU ribosomal protein S18P]-alanine acetyltransferase 0.40 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Enterobacter sp. TBS_079 0.32 MPMX20_00671 [Ribosomal protein S18]-alanine N-acetyltransferase 0.42 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS10505 ribosomal protein S18-alanine N-acetyltransferase 0.45 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Shewanella oneidensis MR-1 0.31 SO1160 rimI ribosomal-protein-alanine acetyltransferase (NCBI ptt file) 0.44 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS04340 ribosomal protein S18-alanine N-acetyltransferase 0.48 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Rhodanobacter denitrificans MT42 0.31 LRK55_RS04115 ribosomal protein S18-alanine N-acetyltransferase 0.48 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Erwinia tracheiphila SCR3 0.31 LU632_RS03760 rimI ribosomal protein S18-alanine N-acetyltransferase 0.43 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 74
Ralstonia solanacearum GMI1000 0.30 RS_RS06860 ribosomal-protein-alanine N-acetyltransferase 0.42 RS_RS01610 D-alanyl-D-alanine carboxypeptidase — —
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_11225 rimI ribosomal protein S18-alanine N-acetyltransferase 0.46 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_2236 [SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128) 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Shewanella loihica PV-4 0.28 Shew_2943 ribosomal-protein-alanine acetyltransferase (RefSeq) 0.45 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_2841 ribosomal-protein-alanine acetyltransferase (RefSeq) 0.26 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_1914 Acetyltransferases 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Rhodopseudomonas palustris CGA009 0.19 TX73_002340 ribosomal protein S18-alanine N-acetyltransferase 0.31 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86
Rhizobium sp. OAE497 0.19 ABIE40_RS01720 N-acetyltransferase 0.24 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein low > 107
Sinorhizobium meliloti 1021 0.19 SMc01117 acetyltransferase 0.27 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Agrobacterium fabrum C58 0.19 Atu0353 acetyltransferase 0.25 Atu1499 penicillin binding protein low > 89

Not shown: 4 genomes with orthologs for PS417_03300 only; 10 genomes with orthologs for PS417_24705 only