Conservation of cofitness between PS417_21480 and PS417_19730 in Pseudomonas simiae WCS417

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_21480 23S rRNA pseudouridylate synthase 1.0 PS417_19730 flagellar biosynthesis protein FliR 0.36 18
Pseudomonas fluorescens SBW25 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.97 PFLU_RS21700 flagellar type III secretion system protein FliR low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.97 PFLU_RS21700 flagellar type III secretion system protein FliR 0.24 99
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_01405 23S rRNA pseudouridylate synthase 0.87 AO353_18755 flagellar biosynthetic protein FliR low > 101
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.83 Pf1N1B4_3620 Flagellar biosynthesis protein FliR — —
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.89 Pf6N2E2_2578 Flagellar biosynthesis protein FliR low > 103
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_20125 23S rRNA pseudouridylate synthase 0.89 AO356_03760 flagellar biosynthetic protein FliR low > 104
Pseudomonas sp. RS175 0.92 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.88 PFR28_00847 Flagellar biosynthetic protein FliR low > 88
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.83 PfGW456L13_4337 Flagellar biosynthesis protein FliR low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.80 Psyr_3442 Flagellar biosynthesis protein FliR low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.80 Psyr_3442 Flagellar biosynthesis protein FliR low > 86
Pseudomonas putida KT2440 0.86 PP_1906 ribosomal large subunit pseudouridine synthase C 0.73 PP_4353 Flagellar biosynthetic protein fliR low > 96
Pseudomonas stutzeri RCH2 0.82 Psest_1680 pseudouridine synthase, RluA family 0.64 Psest_1734 flagellar biosynthetic protein FliR — —
Pseudomonas sp. S08-1 0.81 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.64 OH686_02760 flagellar biosynthetic protein FliR low > 80
Pantoea sp. MT58 0.56 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.25 IAI47_07970 flagellar type III secretion system protein FliR 0.54 17
Pectobacterium carotovorum WPP14 0.55 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.30 HER17_RS08220 flagellar type III secretion system protein FliR low > 75
Rahnella sp. WP5 0.55 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.28 EX31_RS09600 flagellar type III secretion system protein FliR low > 89
Erwinia tracheiphila SCR3 0.54 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.24 LU632_RS10515 fliR flagellar type III secretion system protein FliR low > 74
Escherichia fergusonii Becca 0.54 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.25 EFB2_01996 Flagellar biosynthetic protein FliR low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.26 OHPLBJKB_01779 hypothetical protein — —
Escherichia coli ECOR27 0.54 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 NOLOHH_16285 fliR flagellar type III secretion system protein FliR — —
Escherichia coli ECRC62 0.54 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 BNILDI_15075 fliR flagellar type III secretion system protein FliR — —
Escherichia coli BW25113 0.54 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.25 b1950 fliR flagellar biosynthesis protein R (NCBI) low > 76
Escherichia coli ECRC99 0.54 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 KEDOAH_02440 fliR flagellar type III secretion system protein FliR — —
Escherichia coli ECRC98 0.54 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 JDDGAC_00240 fliR flagellar type III secretion system protein FliR — —
Escherichia coli ECRC102 0.54 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 NIAGMN_02400 fliR flagellar type III secretion system protein FliR — —
Escherichia coli ECRC101 0.54 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 OKFHMN_25655 fliR flagellar type III secretion system protein FliR — —
Escherichia coli ECRC101 0.54 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 MCAODC_19740 fliR flagellar type III secretion system protein FliR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.27 GFF4006 Flagellar biosynthesis protein FliR low > 78
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.31 EX28DRAFT_0604 flagellar biosynthetic protein FliR low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.31 MPMX20_02947 Flagellar biosynthetic protein FliR low > 85
Alteromonas macleodii MIT1002 0.54 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.36 MIT1002_01097 Flagellar biosynthetic protein FliR low > 70
Shewanella amazonensis SB2B 0.53 Sama_1988 pseudouridylate synthase (RefSeq) 0.40 Sama_2285 fliR flagellar biosynthesis protein FliR (RefSeq) low > 62
Dickeya dadantii 3937 0.53 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.25 DDA3937_RS13425 flagellar type III secretion system protein FliR low > 74
Serratia liquefaciens MT49 0.53 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.22 IAI46_15900 flagellar type III secretion system protein FliR low > 86
Dickeya dianthicola ME23 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 DZA65_RS13955 flagellar type III secretion system protein FliR low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 HGI48_RS13470 flagellar type III secretion system protein FliR low > 71
Shewanella loihica PV-4 0.52 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.40 Shew_1378 fliR flagellar biosynthesis protein FliR (RefSeq) — —
Shewanella sp. ANA-3 0.52 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.43 Shewana3_1354 fliR flagellar biosynthesis protein FliR (RefSeq) low > 73
Marinobacter adhaerens HP15 0.49 HP15_2221 pseudouridine synthase, RluA family 0.51 HP15_2310 flagellar biosynthesis protein FliR low > 73
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.36 CSW01_10585 flagellar type III secretion system protein FliR low > 62
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.29 HSERO_RS10250 flagellar biosynthesis protein FliR low > 78
Paraburkholderia graminis OAS925 0.45 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.30 ABIE53_000086 flagellar biosynthetic protein FliR low > 113
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS04500 RluA family pseudouridine synthase 0.31 QEN71_RS28855 flagellar biosynthetic protein FliR 0.77 123
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.29 H281DRAFT_05774 flagellar biosynthetic protein FliR low > 103
Dechlorosoma suillum PS 0.44 Dsui_2437 pseudouridine synthase, RluA family 0.35 Dsui_1744 flagellar biosynthetic protein FliR low > 51
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.29 BPHYT_RS18835 flagellar biosynthesis protein FliR low > 109
Ralstonia solanacearum GMI1000 0.42 RS_RS05155 RluA family pseudouridine synthase 0.26 RS_RS18950 flagellar biosynthetic protein FliR low > 80
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS14155 pseudouridine synthase 0.30 RR42_RS23350 flagellar biosynthesis protein FliR low > 128
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS10090 RluA family pseudouridine synthase 0.29 ABZR87_RS22220 flagellar biosynthetic protein FliR low > 80
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.28 Xcc-8004.2823.1 Flagellar biosynthesis protein FliR low > 74
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS14375 RluA family pseudouridine synthase 0.27 RALBFv3_RS21675 flagellar biosynthetic protein FliR low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS11840 RluA family pseudouridine synthase 0.27 UW163_RS17510 flagellar biosynthetic protein FliR — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS19085 RluA family pseudouridine synthase 0.27 RPSI07_RS01450 flagellar biosynthetic protein FliR low > 81
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS17895 RluA family pseudouridine synthase 0.25 LRK54_RS13555 flagellar biosynthetic protein FliR low > 59
Rhodanobacter denitrificans MT42 0.42 LRK55_RS17750 RluA family pseudouridine synthase 0.25 LRK55_RS13295 flagellar biosynthetic protein FliR low > 63
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.27 OKGIIK_02805 fliR flagellar biosynthetic protein FliR low > 52
Acidovorax sp. GW101-3H11 0.40 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.28 Ac3H11_1416 Flagellar biosynthesis protein FliR low > 79
Variovorax sp. SCN45 0.40 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.35 GFF5738 Flagellar biosynthesis protein FliR low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.26 GFF4089 Flagellar biosynthesis protein FliR low > 90
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS02725 RluA family pseudouridine synthase 0.31 ABZR86_RS20240 flagellar biosynthetic protein FliR low > 74
Castellaniella sp019104865 MT123 0.39 ABCV34_RS08415 RluA family pseudouridine synthase 0.32 ABCV34_RS05705 flagellar biosynthetic protein FliR — —
Agrobacterium fabrum C58 0.29 Atu1471 ribosomal large subunit pseudouridine synthase C 0.15 Atu0582 flagellar biosynthetic protein FLIR — —
Rhizobium sp. OAE497 0.28 ABIE40_RS09915 RluA family pseudouridine synthase 0.12 ABIE40_RS03115 flagellar biosynthetic protein FliR low > 107
Rhodospirillum rubrum S1H 0.27 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.13 Rru_A2822 Flagellar biosynthesis protein FliR (NCBI) — —
Sinorhizobium meliloti 1021 0.26 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.15 SMc03055 flagellar biosynthesis protein FliR low > 103
Magnetospirillum magneticum AMB-1 0.24 AMB_RS15620 RluA family pseudouridine synthase 0.14 AMB_RS03185 flagellar type III secretion system protein FliR low > 64
Azospirillum sp. SherDot2 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.15 MPMX19_00866 Flagellar biosynthetic protein FliR low > 112
Sphingomonas koreensis DSMZ 15582 0.23 Ga0059261_1033 pseudouridine synthase, RluA family 0.22 Ga0059261_2060 flagellar biosynthetic protein FliR — —
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS07865 RluA family pseudouridine synthase 0.17 A4249_RS15230 flagellar biosynthetic protein FliR low > 48
Azospirillum brasilense Sp245 0.22 AZOBR_RS06905 pseudouridine synthase 0.17 AZOBR_RS11115 flagellar biosynthesis protein FliR low > 97
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.17 CCNA_01130 flagellar biosynthesis protein FliR low > 67
Caulobacter crescentus NA1000 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.17 CCNA_01130 flagellar biosynthesis protein FliR low > 66
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU3191 rluC ribosomal large subunit pseudouridine synthase C (TIGR) 0.18 DVU3234 flagellar biosynthetic protein FliR (TIGR) low > 55

Not shown: 11 genomes with orthologs for PS417_21480 only; 4 genomes with orthologs for PS417_19730 only