| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_2317 | | Uncharacterized protein conserved in bacteria | 1.0 | Psest_3818 | | endoribonuclease L-PSP, putative | 0.30 | 16 |
| Pseudomonas sp. S08-1 | 0.90 | OH686_01665 | | Phosphoenolpyruvate synthase regulatory protein | 0.85 | OH686_13545 | | RidA/YER057c/UK114 superfamily protein | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_2089 | | Protein of unknown function DUF299 | 0.85 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_2089 | | Protein of unknown function DUF299 | 0.85 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
| Pseudomonas sp. RS175 | 0.88 | PFR28_01037 | | Phosphoenolpyruvate synthase regulatory protein | 0.89 | PFR28_04425 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.88 | AO353_00875 | | transcriptional regulator | 0.88 | AO353_09285 | | reactive intermediate/imine deaminase | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.88 | AO356_02830 | | transcriptional regulator | 0.88 | AO356_12475 | | reactive intermediate/imine deaminase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_2391 | | FIG137360: hypothetical protein | 0.89 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 103 |
| Pseudomonas putida KT2440 | 0.87 | PP_2081 | | putative phosphoenolpyruvate synthase regulatory protein | 0.91 | PP_5303 | | aminoacrylate/iminopropionate hydrolase/deaminase | 0.39 | 15 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_3824 | | FIG137360: hypothetical protein | 0.89 | Pf1N1B4_2112 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS22635 | | kinase/pyrophosphorylase | 0.88 | PFLU_RS29515 | | RidA family protein | 0.24 | 47 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS22635 | | kinase/pyrophosphorylase | 0.88 | PFLU_RS29515 | | RidA family protein | 0.61 | 30 |
| Pseudomonas simiae WCS417 | 0.87 | PS417_21025 | | PEP synthetase regulatory protein | 0.88 | PS417_27835 | | endoribonuclease | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_4113 | | FIG137360: hypothetical protein | 0.88 | PfGW456L13_779 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.40 | 65 |
| Marinobacter adhaerens HP15 | 0.69 | HP15_2230 | | phosphotransferase YdiA | 0.73 | HP15_306 | | YjgF-like protein | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.56 | MPMX26_01167 | | Phosphoenolpyruvate synthase regulatory protein | 0.69 | MPMX26_02797 | | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Kangiella aquimarina DSM 16071 | 0.55 | B158DRAFT_1552 | | Uncharacterized protein conserved in bacteria | 0.77 | B158DRAFT_0573 | | endoribonuclease L-PSP, putative | low | > 40 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS07245 | | pyruvate, water dikinase regulatory protein | 0.68 | ABZR86_RS11845 | | RidA family protein | low | > 74 |
| Rahnella sp. WP5 | 0.51 | EX31_RS13940 | | kinase/pyrophosphorylase | 0.42 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 89 |
| Dechlorosoma suillum PS | 0.51 | Dsui_2678 | | hypothetical protein | 0.79 | Dsui_0312 | | endoribonuclease L-PSP, putative | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS00470 | | kinase/pyrophosphorylase | 0.37 | RALBFv3_RS20925 | | endoribonuclease L-PSP | — | — |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS13800 | | kinase/pyrophosphorylase | 0.37 | UW163_RS22060 | | endoribonuclease L-PSP | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS07125 | | phosphoenolpyruvate synthase regulatory protein | 0.27 | RS_RS24425 | | RidA family protein | — | — |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS17020 | | kinase/pyrophosphorylase | 0.27 | RPSI07_RS06815 | | RidA family protein | — | — |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_01815 | | Phosphoenolpyruvate synthase regulatory protein | 0.73 | MIT1002_00109 | | Putative reactive intermediate deaminase TdcF | low | > 70 |
| Shewanella oneidensis MR-1 | 0.51 | SO2645 | | conserved hypothetical protein (NCBI ptt file) | 0.71 | SO0358 | | endoribonuclease L-PSP, putative (NCBI ptt file) | 0.27 | 53 |
| Shewanella amazonensis SB2B | 0.51 | Sama_2073 | | hypothetical protein (RefSeq) | 0.75 | Sama_0263 | | YjgF-like protein (RefSeq) | low | > 62 |
| Rhodanobacter denitrificans FW104-10B01 | 0.51 | LRK54_RS16875 | | kinase/pyrophosphorylase | 0.65 | LRK54_RS11800 | | RidA family protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.51 | LRK55_RS16590 | | pyruvate, water dikinase regulatory protein | 0.65 | LRK55_RS11525 | | RidA family protein | low | > 63 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_1735 | | hypothetical protein (RefSeq) | 0.70 | Shewana3_3813 | | putative endoribonuclease L-PSP (RefSeq) | low | > 73 |
| Serratia liquefaciens MT49 | 0.51 | IAI46_11110 | | kinase/pyrophosphorylase | 0.39 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Paraburkholderia sabiae LMG 24235 | 0.51 | QEN71_RS06500 | | pyruvate, water dikinase regulatory protein | 0.46 | QEN71_RS41190 | | RidA family protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.50 | OKGIIK_07965 | ppsR | phosphoenolpyruvate synthase regulatory protein | 0.65 | OKGIIK_12095 | ridA | reactive intermediate/imine deaminase | low | > 52 |
| Shewanella loihica PV-4 | 0.50 | Shew_1548 | | hypothetical protein (RefSeq) | 0.73 | Shew_3500 | | putative endoribonuclease L-PSP (RefSeq) | low | > 60 |
| Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS11795 | | PEP synthetase regulatory protein | 0.33 | RR42_RS16710 | | endoribonuclease L-PSP | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.50 | ABZR87_RS11920 | | pyruvate, water dikinase regulatory protein | 0.32 | ABZR87_RS05790 | | RidA family protein | — | — |
| Pantoea sp. MT58 | 0.50 | IAI47_10910 | | kinase/pyrophosphorylase | 0.42 | IAI47_16870 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.50 | HGI48_RS12880 | | kinase/pyrophosphorylase | 0.41 | HGI48_RS01890 | | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Dickeya dianthicola ME23 | 0.50 | DZA65_RS13345 | | kinase/pyrophosphorylase | 0.40 | DZA65_RS01960 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.50 | H281DRAFT_00626 | | hypothetical protein | 0.37 | H281DRAFT_01079 | | Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family | — | — |
| Pectobacterium carotovorum WPP14 | 0.50 | HER17_RS08880 | | kinase/pyrophosphorylase | 0.42 | HER17_RS19520 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Paraburkholderia graminis OAS925 | 0.50 | ABIE53_002487 | | regulator of PEP synthase PpsR (kinase-PPPase family) | 0.27 | ABIE53_003968 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 113 |
| Dickeya dadantii 3937 | 0.49 | DDA3937_RS12810 | | kinase/pyrophosphorylase | 0.42 | DDA3937_RS01915 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS12060 | | hypothetical protein | 0.31 | BPHYT_RS29300 | | endoribonuclease L-PSP | low | > 109 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF3919 | | FIG137360: hypothetical protein | 0.27 | GFF3622 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | — | — |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS09530 | | pyruvate, water dikinase regulatory protein | 0.67 | ABIE51_RS17260 | | RidA family protein | low | > 62 |
| Escherichia coli BW25113 | 0.49 | b1703 | ydiA | hypothetical protein (NCBI) | 0.43 | b3113 | yhaR | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.49 | ECOLIN_RS09520 | | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | ECOLIN_RS17920 | | enamine/imine deaminase | — | — |
| Escherichia coli ECRC102 | 0.49 | NIAGMN_00925 | ppsR | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | NIAGMN_16185 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECOR27 | 0.49 | NOLOHH_17660 | ppsR | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | NOLOHH_10200 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECRC101 | 0.49 | OKFHMN_27140 | ppsR | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | OKFHMN_18420 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECOR38 | 0.49 | HEPCGN_05505 | ppsR | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | HEPCGN_17255 | tdcF | enamine/imine deaminase | low | > 85 |
| Escherichia fergusonii Becca | 0.49 | EFB2_02288 | | Phosphoenolpyruvate synthase regulatory protein | 0.43 | EFB2_00701 | | Putative reactive intermediate deaminase TdcF | low | > 86 |
| Escherichia coli ECRC101 | 0.49 | MCAODC_18270 | ppsR | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | MCAODC_08935 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECRC99 | 0.49 | KEDOAH_00970 | ppsR | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | KEDOAH_09725 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECRC98 | 0.49 | JDDGAC_01715 | ppsR | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | JDDGAC_22055 | tdcF | enamine/imine deaminase | — | — |
| Castellaniella sp019104865 MT123 | 0.49 | ABCV34_RS04030 | | pyruvate, water dikinase regulatory protein | 0.56 | ABCV34_RS03565 | | Rid family detoxifying hydrolase | — | — |
| Escherichia coli ECRC62 | 0.49 | BNILDI_16450 | ppsR | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR | 0.43 | BNILDI_01325 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli BL21 | 0.49 | ECD_01672 | | PEP synthase kinase and PEP synthase pyrophosphorylase | 0.43 | ECD_02980 | | putative reactive intermediate deaminase | — | — |
| Variovorax sp. SCN45 | 0.48 | GFF2819 | | Phosphoenolpyruvate synthase regulatory protein | 0.31 | GFF3442 | | RidA/YER057c/UK114 superfamily protein | low | > 127 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF3537 | | FIG137360: hypothetical protein | 0.43 | GFF928 | | Endoribonuclease L-PSP | low | > 78 |
| Variovorax sp. OAS795 | 0.48 | ABID97_RS10810 | | pyruvate, water dikinase regulatory protein | 0.29 | ABID97_RS22895 | | RidA family protein | — | — |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_01921 | | Phosphoenolpyruvate synthase regulatory protein | 0.40 | MPMX20_00542 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
| Klebsiella michiganensis M5al | 0.48 | BWI76_RS17070 | | phosphoenolpyruvate synthase regulatory protein | 0.42 | BWI76_RS02985 | | reactive intermediate/imine deaminase | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS11015 | | kinase/pyrophosphorylase | 0.39 | LU632_RS20960 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_1705 | | Uncharacterized protein conserved in bacteria | 0.39 | EX28DRAFT_3444 | | reactive intermediate/imine deaminase | low | > 76 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.2415.1 | | FIG137360: hypothetical protein | 0.64 | Xcc-8004.1205.1 | | hypothetical protein | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.38 | CSW01_19045 | | phosphoenolpyruvate synthase regulatory protein | 0.42 | CSW01_12735 | | RidA family protein | low | > 62 |
| Azospirillum sp. SherDot2 | 0.20 | MPMX19_02558 | | Putative pyruvate, phosphate dikinase regulatory protein | 0.31 | MPMX19_04018 | | 2-aminomuconate deaminase | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS01755 | | hypothetical protein | 0.44 | AZOBR_RS32435 | | dfrA | low | > 97 |
| Bosea sp. OAE506 | 0.19 | ABIE41_RS04660 | | pyruvate, water dikinase regulatory protein | 0.20 | ABIE41_RS11850 | | RidA family protein | low | > 77 |
| Caulobacter crescentus NA1000 Δfur | 0.19 | CCNA_00001 | | ATP/GTP-binding protein | 0.27 | CCNA_02886 | | RutC-family pyrimidine utilization protein C | low | > 67 |
| Sphingomonas koreensis DSMZ 15582 | 0.19 | Ga0059261_2196 | | Uncharacterized protein conserved in bacteria | 0.25 | Ga0059261_1670 | | Putative translation initiation inhibitor, yjgF family | low | > 68 |
| Caulobacter crescentus NA1000 | 0.19 | CCNA_00001 | | ATP/GTP-binding protein | 0.27 | CCNA_02886 | | RutC-family pyrimidine utilization protein C | low | > 66 |
| Rhizobium sp. OAE497 | 0.18 | ABIE40_RS19240 | | pyruvate, water dikinase regulatory protein | 0.22 | ABIE40_RS21405 | | RidA family protein | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.17 | SMc02793 | | hypothetical protein | 0.28 | SMa2289 | | hypothetical protein | low | > 103 |
Not shown: 7 genomes with orthologs for Psest_2317 only; 17 genomes with orthologs for Psest_3818 only