| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF5584 | | DNA polymerase I (EC 2.7.7.7) | 1.0 | GFF3686 | | NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) | 0.72 | 15 |
| Variovorax sp. SCN45 | 0.77 | GFF4006 | | DNA polymerase I (EC 2.7.7.7) | 0.83 | GFF4755 | | NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) | — | — |
| Variovorax sp. OAS795 | 0.75 | ABID97_RS09180 | | DNA polymerase I | 0.82 | ABID97_RS20470 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Acidovorax sp. GW101-3H11 | 0.74 | Ac3H11_1648 | | DNA polymerase I (EC 2.7.7.7) | 0.82 | Ac3H11_1447 | | NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) | — | — |
| Ralstonia solanacearum GMI1000 | 0.60 | RS_RS11195 | | DNA polymerase I | 0.72 | RS_RS10320 | | NADH-quinone oxidoreductase subunit F | — | — |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS09920 | | DNA polymerase I | 0.72 | UW163_RS10775 | | NADH-quinone oxidoreductase subunit F | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS03750 | | DNA polymerase I | 0.72 | RALBFv3_RS02950 | | NADH-quinone oxidoreductase subunit F | — | — |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS13480 | | DNA polymerase I | 0.70 | RPSI07_RS14360 | | NADH-quinone oxidoreductase subunit F | — | — |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS15680 | | DNA polymerase I | 0.72 | ABZR87_RS14855 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Herbaspirillum seropedicae SmR1 | 0.59 | HSERO_RS02260 | | DNA polymerase I | 0.70 | HSERO_RS08845 | | NADH dehydrogenase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.57 | QEN71_RS17885 | | DNA polymerase I | 0.69 | QEN71_RS24125 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.57 | RR42_RS15050 | | DNA polymerase I | 0.72 | RR42_RS05535 | | NADH dehydrogenase | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_004852 | | DNA polymerase-1 | 0.71 | ABIE53_001595 | | NADH-quinone oxidoreductase subunit F | — | — |
| Burkholderia phytofirmans PsJN | 0.56 | BPHYT_RS33610 | | DNA polymerase I | 0.70 | BPHYT_RS06650 | | NADH dehydrogenase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_06022 | | DNA polymerase I | 0.71 | H281DRAFT_04572 | | NADH dehydrogenase subunit F | — | — |
| Dechlorosoma suillum PS | 0.53 | Dsui_0459 | | DNA polymerase I | 0.68 | Dsui_3045 | | NADH-quinone oxidoreductase, F subunit | — | — |
| Castellaniella sp019104865 MT123 | 0.53 | ABCV34_RS02195 | | DNA polymerase I | 0.71 | ABCV34_RS08725 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_0499 | | DNA polymerase I (EC 2.7.7.7) | 0.61 | B158DRAFT_0122 | | NADH-quinone oxidoreductase, F subunit | low | > 40 |
| Dyella japonica UNC79MFTsu3.2 | 0.48 | ABZR86_RS17015 | | DNA polymerase I | 0.50 | ABZR86_RS06090 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS06585 | | DNA polymerase I | 0.54 | LRK55_RS00880 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.47 | LRK54_RS06840 | | DNA polymerase I | 0.54 | LRK54_RS01105 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Pseudomonas sp. S08-1 | 0.47 | OH686_12215 | | DNA polymerase I | 0.34 | OH686_00135 | | NADH oxidoreductase (quinone), F subunit | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.46 | OKGIIK_16785 | polA | DNA polymerase I | 0.54 | OKGIIK_05790 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Lysobacter sp. OAE881 | 0.46 | ABIE51_RS02010 | | DNA polymerase I | 0.54 | ABIE51_RS08335 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.5105.1 | | DNA polymerase I (EC 2.7.7.7) | 0.50 | Xcc-8004.1988.1 | | NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) | — | — |
| Shewanella oneidensis MR-1 | 0.44 | SO4669 | polA | DNA polymerase I (NCBI ptt file) | 0.36 | SO1017 | nuoF | NADH dehydrogenase I, F subunit (NCBI ptt file) | — | — |
| Pseudomonas putida KT2440 | 0.44 | PP_0123 | | DNA polymerase I, 5 | 0.35 | PP_4123 | | NADH-quinone oxidoreductase subunit F | — | — |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS00395 | | DNA polymerase I | 0.35 | PFLU_RS18635 | | NADH-quinone oxidoreductase subunit NuoF | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS00395 | | DNA polymerase I | 0.35 | PFLU_RS18635 | | NADH-quinone oxidoreductase subunit NuoF | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_10930 | | DNA polymerase I | 0.35 | AO353_27760 | | NADH dehydrogenase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_594 | | DNA polymerase I (EC 2.7.7.7) | 0.36 | PfGW456L13_2629 | | NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) | — | — |
| Pseudomonas simiae WCS417 | 0.44 | PS417_00405 | | DNA polymerase I | 0.35 | PS417_16595 | | NADH dehydrogenase | — | — |
| Pantoea sp. MT58 | 0.43 | IAI47_00430 | | DNA polymerase I | 0.35 | IAI47_06380 | | NADH-quinone oxidoreductase subunit NuoF | low | > 76 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_4162 | | DNA polymerase I (EC 2.7.7.7) | 0.34 | Pf6N2E2_273 | | NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) | — | — |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_4343 | | DNA polymerase I (EC 2.7.7.7) | 0.36 | EX28DRAFT_0325 | | NADH-quinone oxidoreductase, F subunit | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.43 | AO356_11465 | | DNA polymerase I | 0.35 | AO356_22050 | | NADH dehydrogenase | — | — |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS00105 | | DNA polymerase I | 0.35 | DDA3937_RS14315 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_17775 | polA | DNA polymerase I | 0.36 | JDDGAC_26825 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Escherichia coli BW25113 | 0.43 | b3863 | polA | DNA polymerase I (NCBI) | 0.36 | b2284 | nuoF | NADH:ubiquinone oxidoreductase, chain F (NCBI) | low | > 76 |
| Pseudomonas sp. RS175 | 0.43 | PFR28_04624 | | DNA polymerase I | 0.35 | PFR28_02631 | | NADH-quinone oxidoreductase subunit F | — | — |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_04601 | | DNA polymerase I | 0.36 | MPMX20_03214 | | NADH-quinone oxidoreductase subunit F | low | > 85 |
| Escherichia coli ECRC100 | 0.43 | OKFHMN_14150 | polA | DNA polymerase I | 0.36 | OKFHMN_22860 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_14000 | polA | DNA polymerase I | 0.36 | KEDOAH_05335 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_06280 | polA | DNA polymerase I | 0.36 | NOLOHH_14480 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_11905 | polA | DNA polymerase I | 0.36 | NIAGMN_20630 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_04650 | polA | DNA polymerase I | 0.36 | MCAODC_13900 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Escherichia coli BL21 | 0.43 | ECD_03749 | | 5 | 0.36 | ECD_02209 | | NADH:ubiquinone oxidoreductase, chain F | — | — |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS22270 | | DNA polymerase I | 0.36 | ECOLIN_RS13265 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Serratia liquefaciens MT49 | 0.43 | IAI46_24985 | | DNA polymerase I | 0.36 | IAI46_17690 | | NADH-quinone oxidoreductase subunit NuoF | low | > 86 |
| Escherichia coli ECRC62 | 0.43 | BNILDI_05250 | polA | DNA polymerase I | 0.36 | BNILDI_13400 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Escherichia fergusonii Becca | 0.43 | EFB2_04753 | | DNA polymerase I | 0.36 | EFB2_01575 | | NADH-quinone oxidoreductase subunit F | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_12785 | polA | DNA polymerase I | 0.36 | HEPCGN_22065 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS21260 | | DNA polymerase I | 0.35 | HGI48_RS14290 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS00355 | | DNA polymerase I | 0.36 | BWI76_RS20170 | | NADH-quinone oxidoreductase subunit F | low | > 92 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_04189 | | DNA polymerase I | 0.36 | OHPLBJKB_01422 | | NADH-quinone oxidoreductase subunit F | — | — |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS22235 | | DNA polymerase I | 0.35 | DZA65_RS14965 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.43 | Psyr_0270 | | DNA polymerase I | 0.35 | Psyr_3201 | | NADH dehydrogenase subunit F | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.43 | Psyr_0270 | | DNA polymerase I | 0.35 | Psyr_3201 | | NADH dehydrogenase subunit F | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_1875 | | DNA polymerase I (EC 2.7.7.7) | 0.35 | Pf1N1B4_4037 | | NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) | — | — |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS23870 | polA | DNA polymerase I | 0.35 | LU632_RS07985 | nuoF | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF2216 | | DNA polymerase I (EC 2.7.7.7) | 0.36 | GFF1887 | | NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.42 | HER17_RS21470 | | DNA polymerase I | 0.37 | HER17_RS07145 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Rahnella sp. WP5 | 0.42 | EX31_RS15905 | | DNA polymerase I | 0.36 | EX31_RS19415 | | NADH-quinone oxidoreductase subunit NuoF | low | > 89 |
| Acinetobacter radioresistens SK82 | 0.39 | MPMX26_00574 | | DNA polymerase I | 0.37 | MPMX26_02551 | | NADH-quinone oxidoreductase subunit F | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS13840 | | DNA polymerase I | 0.44 | A4249_RS06390 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS21305 | | DNA polymerase I | 0.45 | AMB_RS13985 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_03577 | | DNA polymerase I | 0.44 | CCNA_02024 | | NADH-quinone oxidoreductase chain F | — | — |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_03577 | | DNA polymerase I | 0.44 | CCNA_02024 | | NADH-quinone oxidoreductase chain F | — | — |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS30685 | | DNA polymerase | 0.43 | AZOBR_RS07190 | | NADH dehydrogenase | — | — |
| Agrobacterium fabrum C58 | 0.35 | Atu0110 | | DNA polymerase I | 0.43 | Atu1275 | | NADH ubiquinone oxidoreductase chain F | — | — |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_04869 | | DNA polymerase I | 0.43 | MPMX19_01741 | | NADH-quinone oxidoreductase subunit F | — | — |
| Dinoroseobacter shibae DFL-12 | 0.34 | Dshi_2909 | | DNA polymerase I (RefSeq) | 0.44 | Dshi_1316 | | NADH-quinone oxidoreductase, F subunit (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS03570 | | DNA polymerase I | 0.44 | ABIE41_RS17925 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS00490 | | DNA polymerase I | 0.43 | ABIE40_RS07205 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c31780 | | DNA polymerase I | 0.42 | PGA1_c10430 | | NADH-quinone oxidoreductase subunit F | — | — |
| Rhodopseudomonas palustris CGA009 | 0.33 | TX73_024545 | | DNA polymerase I | 0.43 | TX73_015260 | | NADH-quinone oxidoreductase subunit NuoF | — | — |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A3514 | | DNA polymerase A (NCBI) | 0.44 | Rru_A1560 | | NADH-quinone oxidoreductase, F subunit (NCBI) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.32 | CA264_16535 | | DNA polymerase I | 0.43 | CA264_14225 | | NADH oxidoreductase (quinone) subunit F | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.32 | CA265_RS19630 | | DNA polymerase I | 0.40 | CA265_RS23555 | | NADH-quinone oxidoreductase subunit F | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.31 | ABZR88_RS20185 | | DNA polymerase I | 0.42 | ABZR88_RS17145 | | NADH-quinone oxidoreductase subunit NuoF | low | > 71 |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_2244 | | DNA polymerase I (EC 2.7.7.7) | 0.44 | Ga0059261_0704 | | NADH-quinone oxidoreductase, F subunit | — | — |
Not shown: 17 genomes with orthologs for GFF5584 only; 2 genomes with orthologs for GFF3686 only