Conservation of cofitness between HP15_622 and HP15_3354 in Marinobacter adhaerens HP15

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_622 exoribonuclease R 1.0 HP15_3354 two component transcriptional regulator, winged helix family 0.51 14
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_08610 exoribonuclease R 0.82 AO356_11000 phosphate regulon transcriptional regulatory protein PhoB low > 104
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R 0.82 Pf6N2E2_4066 Phosphate regulon transcriptional regulatory protein PhoB (SphR) low > 103
Pseudomonas sp. RS175 0.52 PFR28_05130 Ribonuclease R 0.82 PFR28_04479 Phosphate regulon transcriptional regulatory protein PhoB low > 88
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_144 3'-to-5' exoribonuclease RNase R 0.82 PfGW456L13_762 Phosphate regulon transcriptional regulatory protein PhoB (SphR) low > 87
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_13200 exoribonuclease R 0.82 AO353_09855 phosphate regulon transcriptional regulatory protein PhoB low > 101
Pseudomonas simiae WCS417 0.52 PS417_02555 exoribonuclease R 0.81 PS417_28035 transcriptional regulator PhoB low > 88
Pseudomonas fluorescens SBW25 0.52 PFLU_RS02625 ribonuclease R 0.82 PFLU_RS29725 phosphate regulon transcriptional regulatory protein PhoB low > 109
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS02625 ribonuclease R 0.82 PFLU_RS29725 phosphate regulon transcriptional regulatory protein PhoB low > 109
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R 0.82 Pf1N1B4_2044 Phosphate regulon transcriptional regulatory protein PhoB (SphR) low > 87
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_0579 RNAse R 0.82 Psyr_5032 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_0579 RNAse R 0.82 Psyr_5032 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas sp. S08-1 0.51 OH686_15910 ribonuclease R 0.81 OH686_13465 phosphate regulon transcriptional regulatory protein PhoB low > 80
Pseudomonas putida KT2440 0.51 PP_4880 exoribonuclease R 0.81 PP_5320 two-component system DNA-binding transcriptional dual response regulator PhoB low > 96
Pseudomonas stutzeri RCH2 0.51 Psest_0691 ribonuclease R 0.82 Psest_3845 phosphate regulon transcriptional regulatory protein PhoB low > 67
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.62 GFF4296 Phosphate regulon transcriptional regulatory protein PhoB (SphR) low > 78
Shewanella loihica PV-4 0.46 Shew_3289 ribonuclease R (RefSeq) 0.64 Shew_2749 two component transcriptional regulator (RefSeq) low > 60
Klebsiella michiganensis M5al 0.46 BWI76_RS02575 exoribonuclease R 0.62 BWI76_RS06230 DNA-binding response regulator low > 92
Enterobacter asburiae PDN3 0.46 EX28DRAFT_3376 ribonuclease R 0.62 EX28DRAFT_2575 phosphate regulon transcriptional regulatory protein PhoB 0.77 9
Enterobacter sp. TBS_079 0.46 MPMX20_00460 Ribonuclease R 0.62 MPMX20_00986 Phosphate regulon transcriptional regulatory protein PhoB low > 85
Escherichia coli BW25113 0.46 b4179 vacB putative enzyme (VIMSS) 0.62 b0399 phoB DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) (NCBI) low > 76
Escherichia coli Nissle 1917 0.46 ECOLIN_RS24265 ribonuclease R 0.62 ECOLIN_RS02410 phosphate response regulator transcription factor PhoB low > 52
Escherichia coli BL21 0.46 ECD_04046 exoribonuclease R, RNase R 0.62 ECD_00347 response regulator in two-component regulatory system with PhoR low > 60
Escherichia coli ECRC101 0.46 MCAODC_02735 rnr ribonuclease R 0.62 MCAODC_27770 phoB phosphate response regulator transcription factor PhoB — —
Escherichia coli ECRC102 0.46 NIAGMN_10070 rnr ribonuclease R 0.62 NIAGMN_06600 phoB phosphate response regulator transcription factor PhoB — —
Escherichia coli ECRC99 0.46 KEDOAH_15935 rnr ribonuclease R 0.62 KEDOAH_19420 phoB phosphate response regulator transcription factor PhoB — —
Escherichia coli ECRC62 0.46 BNILDI_07005 rnr ribonuclease R 0.62 BNILDI_22890 phoB phosphate response regulator transcription factor PhoB — —
Escherichia coli ECOR27 0.46 NOLOHH_04485 rnr ribonuclease R 0.62 NOLOHH_01475 phoB phosphate response regulator transcription factor PhoB low > 57
Escherichia coli ECRC98 0.46 JDDGAC_15860 rnr ribonuclease R 0.62 JDDGAC_12200 phoB phosphate response regulator transcription factor PhoB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_03863 Ribonuclease R 0.62 OHPLBJKB_03277 Phosphate regulon transcriptional regulatory protein PhoB low > 73
Escherichia coli ECRC101 0.46 OKFHMN_12220 rnr ribonuclease R 0.62 OKFHMN_08545 phoB phosphate response regulator transcription factor PhoB — —
Escherichia fergusonii Becca 0.46 EFB2_04356 Ribonuclease R 0.62 EFB2_03658 Phosphate regulon transcriptional regulatory protein PhoB low > 86
Escherichia coli ECOR38 0.46 HEPCGN_10450 rnr ribonuclease R 0.62 HEPCGN_07185 phoB phosphate response regulator transcription factor PhoB low > 85
Pectobacterium carotovorum WPP14 0.45 HER17_RS03835 ribonuclease R 0.63 HER17_RS16040 phosphate response regulator transcription factor PhoB low > 75
Erwinia tracheiphila SCR3 0.45 LU632_RS21750 rnr ribonuclease R 0.62 LU632_RS18925 phoB phosphate response regulator transcription factor PhoB low > 74
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_13155 ribonuclease R 0.66 CSW01_03760 phosphate regulon transcriptional regulatory protein PhoB low > 62
Pantoea sp. MT58 0.45 IAI47_02625 ribonuclease R 0.63 IAI47_14855 phosphate response regulator transcription factor PhoB low > 76
Rahnella sp. WP5 0.45 EX31_RS08785 ribonuclease R 0.63 EX31_RS22040 phosphate response regulator transcription factor PhoB low > 89
Dickeya dadantii 3937 0.45 DDA3937_RS17260 ribonuclease R 0.63 DDA3937_RS05425 phosphate response regulator transcription factor PhoB low > 74
Dickeya dianthicola ME23 0.45 DZA65_RS18405 ribonuclease R 0.63 DZA65_RS05810 phosphate response regulator transcription factor PhoB low > 75
Dickeya dianthicola 67-19 0.45 HGI48_RS17315 ribonuclease R 0.63 HGI48_RS05485 phosphate response regulator transcription factor PhoB low > 71
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_1989 ribonuclease R 0.55 B158DRAFT_0895 phosphate regulon transcriptional regulatory protein PhoB low > 40
Serratia liquefaciens MT49 0.44 IAI46_01660 ribonuclease R 0.63 IAI46_04775 phosphate response regulator transcription factor PhoB low > 86
Shewanella sp. ANA-3 0.44 Shewana3_0697 RNAse R (RefSeq) 0.63 Shewana3_2879 two component transcriptional regulator (RefSeq) low > 73
Dechlorosoma suillum PS 0.44 Dsui_3128 ribonuclease R 0.60 Dsui_0863 phosphate regulon transcriptional regulatory protein PhoB low > 51
Shewanella oneidensis MR-1 0.44 SO3935 vacB ribonuclease R (NCBI ptt file) 0.63 SO1558 phoB phosphate regulon response regulator PhoB (NCBI ptt file) low > 76
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS13065 ribonuclease R 0.56 RR42_RS13445 chemotaxis protein CheY low > 128
Ralstonia solanacearum PSI07 0.44 RPSI07_RS18030 ribonuclease R 0.56 RPSI07_RS15320 phosphate regulon transcriptional regulatory protein PhoB low > 81
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS09290 ribonuclease R 0.48 HSERO_RS06335 chemotaxis protein CheY low > 78
Ralstonia solanacearum GMI1000 0.43 RS_RS06155 ribonuclease R 0.55 RS_RS07695 phosphate regulon transcriptional regulatory protein PhoB low > 80
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS15345 ribonuclease R 0.56 RALBFv3_RS02125 phosphate regulon transcriptional regulatory protein PhoB low > 76
Ralstonia solanacearum UW163 0.43 UW163_RS12810 ribonuclease R 0.56 UW163_RS15435 phosphate regulon transcriptional regulatory protein PhoB — —
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS10985 ribonuclease R 0.55 ABZR87_RS14075 phosphate regulon transcriptional regulator PhoB low > 80
Alteromonas macleodii MIT1002 0.43 MIT1002_03606 Ribonuclease R 0.64 MIT1002_00751 Phosphate regulon transcriptional regulatory protein PhoB low > 70
Shewanella amazonensis SB2B 0.42 Sama_3067 exoribonuclease II (RefSeq) 0.63 Sama_1074 response regulator receiver protein (RefSeq) low > 62
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS08455 ribonuclease R 0.55 BPHYT_RS14120 chemotaxis protein CheY low > 109
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS22925 ribonuclease R 0.55 QEN71_RS04845 phosphate regulon transcriptional regulator PhoB low > 153
Paraburkholderia graminis OAS925 0.42 ABIE53_001940 ribonuclease R 0.55 ABIE53_002990 two-component system phosphate regulon response regulator PhoB low > 113
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_00712 RNAse R 0.55 H281DRAFT_04416 two component transcriptional regulator, winged helix family low > 103
Castellaniella sp019104865 MT123 0.41 ABCV34_RS06625 ribonuclease R 0.57 ABCV34_RS14470 phosphate regulon transcriptional regulator PhoB low > 48
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS08270 ribonuclease R 0.56 ABZR86_RS00720 phosphate regulon transcriptional regulator PhoB low > 74
Lysobacter sp. OAE881 0.39 ABIE51_RS07475 ribonuclease R 0.58 ABIE51_RS14220 phosphate regulon transcriptional regulator PhoB low > 62
Acidovorax sp. GW101-3H11 0.39 Ac3H11_412 3'-to-5' exoribonuclease RNase R 0.49 Ac3H11_461 Phosphate regulon transcriptional regulatory protein PhoB (SphR) low > 79
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R 0.59 Xcc-8004.4062.1 Phosphate regulon transcriptional regulatory protein PhoB (SphR) low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4921 3'-to-5' exoribonuclease RNase R 0.51 GFF63 Phosphate regulon transcriptional regulatory protein PhoB (SphR) low > 90
Variovorax sp. OAS795 0.38 ABID97_RS17200 ribonuclease R 0.51 ABID97_RS14620 phosphate regulon transcriptional regulator PhoB low > 91
Variovorax sp. SCN45 0.38 GFF399 3'-to-5' exoribonuclease RNase R 0.51 GFF1097 Phosphate regulon transcriptional regulatory protein PhoB (SphR) low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02684 Ribonuclease R 0.66 MPMX26_02958 Phosphate regulon transcriptional regulatory protein PhoB low > 36
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS10530 ribonuclease R 0.35 CA265_RS09180 DNA-binding response regulator — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS04270 ribonuclease R 0.34 ABZR88_RS03105 response regulator transcription factor 0.66 3
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_0669 ribonuclease R 0.36 Echvi_0046 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_17355 ribonuclease R 0.33 CA264_19685 DNA-binding response regulator low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS08325 ribonuclease R 0.46 A4249_RS08970 phosphate regulon transcriptional regulator PhoB — —
Rhodopseudomonas palustris CGA009 0.22 TX73_016160 ribonuclease R 0.44 TX73_024820 phosphate regulon transcriptional regulator PhoB low > 86
Agrobacterium fabrum C58 0.22 Atu1303 exoribonuclease 0.45 Atu0425 two component response regulator — —
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS06100 ribonuclease R 0.35 ABI39_RS21085 response regulator transcription factor low > 72
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS10970 ribonuclease R 0.35 HMPREF1058_RS07210 response regulator transcription factor low > 67
Rhizobium sp. OAE497 0.22 ABIE40_RS07350 ribonuclease R 0.44 ABIE40_RS02310 phosphate regulon transcriptional regulator PhoB low > 107
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS05885 ribonuclease R 0.34 HMPREF1078_RS09515 response regulator transcription factor low > 61
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS01550 ribonuclease R 0.33 HMPREF1181_RS04745 response regulator transcription factor low > 56

Not shown: 2 genomes with orthologs for HP15_622 only; 17 genomes with orthologs for HP15_3354 only