Conservation of cofitness between Psest_0175 and Psest_3351 in Pseudomonas stutzeri RCH2

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0175 Xaa-Pro aminopeptidase 1.0 Psest_3351 peptide chain release factor 3 0.36 15
Pseudomonas sp. S08-1 0.93 OH686_11205 Xaa-Pro aminopeptidase 0.93 OH686_08765 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2229 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.76 Pf1N1B4_1130 Peptide chain release factor 3 — —
Pseudomonas putida KT2440 0.85 PP_5200 proline aminopeptidase P II 0.94 PP_0872 Peptide chain release factor 3 low > 96
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_4480 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.93 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas simiae WCS417 0.83 PS417_27285 Xaa-Pro aminopeptidase 0.94 PS417_04030 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_08760 Xaa-Pro aminopeptidase 0.94 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_0321 aminopeptidase P, Metallo peptidase, MEROPS family M24B 0.94 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_0321 aminopeptidase P, Metallo peptidase, MEROPS family M24B 0.94 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas fluorescens SBW25 0.83 PFLU_RS28945 Xaa-Pro aminopeptidase 0.93 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.83 PFLU_RS28945 Xaa-Pro aminopeptidase 0.93 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas sp. RS175 0.83 PFR28_04321 Xaa-Pro aminopeptidase 0.93 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_13010 Xaa-Pro aminopeptidase 0.94 AO356_07285 peptide chain release factor 3 — —
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_896 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.94 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Marinobacter adhaerens HP15 0.68 HP15_3203 proline aminopeptidase P II 0.70 HP15_541 peptide chain release factor 3 low > 73
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_0533 Xaa-Pro aminopeptidase 0.70 B158DRAFT_2239 peptide chain release factor 3 low > 40
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS11970 aminopeptidase P N-terminal domain-containing protein 0.65 ABZR86_RS19000 peptide chain release factor 3 — —
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.1147.1 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.62 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Rhodanobacter denitrificans MT42 0.54 LRK55_RS11420 aminopeptidase P N-terminal domain-containing protein 0.65 LRK55_RS05155 peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS11695 aminopeptidase P N-terminal domain-containing protein 0.65 LRK54_RS05380 peptide chain release factor 3 — —
Lysobacter sp. OAE881 0.54 ABIE51_RS17320 aminopeptidase P N-terminal domain-containing protein 0.64 ABIE51_RS16210 peptide chain release factor 3 — —
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_12200 pepP Xaa-Pro aminopeptidase 0.64 OKGIIK_01430 prfC peptide chain release factor 3 — —
Acinetobacter radioresistens SK82 0.52 MPMX26_02286 Xaa-Pro aminopeptidase 0.73 MPMX26_00476 Peptide chain release factor RF3 low > 36
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS03510 proline aminopeptidase P II 0.64 HSERO_RS14640 peptide chain release factor 3 low > 78
Klebsiella michiganensis M5al 0.48 BWI76_RS23895 Xaa-Pro aminopeptidase 0.70 BWI76_RS04100 peptide chain release factor 3 low > 92
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS02745 Xaa-Pro aminopeptidase 0.62 RR42_RS37475 peptide chain release factor 3 low > 128
Dickeya dadantii 3937 0.48 DDA3937_RS02395 Xaa-Pro aminopeptidase 0.70 DDA3937_RS02445 peptide chain release factor 3 low > 74
Escherichia fergusonii Becca 0.48 EFB2_00994 Xaa-Pro aminopeptidase 0.69 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli Nissle 1917 0.48 ECOLIN_RS16190 Xaa-Pro aminopeptidase 0.69 ECOLIN_RS25110 peptide chain release factor 3 0.84 1
Dickeya dianthicola ME23 0.47 DZA65_RS02455 Xaa-Pro aminopeptidase 0.70 DZA65_RS02505 peptide chain release factor 3 low > 75
Escherichia coli ECRC62 0.47 BNILDI_09950 pepP Xaa-Pro aminopeptidase 0.69 BNILDI_08000 prfC peptide chain release factor 3 — —
Serratia liquefaciens MT49 0.47 IAI46_20875 Xaa-Pro aminopeptidase 0.70 IAI46_02875 peptide chain release factor 3 0.54 16
Escherichia coli ECOR38 0.47 HEPCGN_18795 pepP Xaa-Pro aminopeptidase 0.69 HEPCGN_09285 prfC peptide chain release factor 3 low > 85
Escherichia coli ECOR27 0.47 NOLOHH_11415 pepP Xaa-Pro aminopeptidase 0.69 NOLOHH_03600 prfC peptide chain release factor 3 low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_00807 Xaa-Pro aminopeptidase 0.69 OHPLBJKB_03687 Peptide chain release factor RF3 0.50 73
Escherichia coli BL21 0.47 ECD_02740 proline aminopeptidase P II 0.69 ECD_04250 peptide chain release factor RF-3 low > 60
Dickeya dianthicola 67-19 0.47 HGI48_RS02350 Xaa-Pro aminopeptidase 0.70 HGI48_RS02400 peptide chain release factor 3 — —
Escherichia coli ECRC98 0.47 JDDGAC_23145 pepP Xaa-Pro aminopeptidase 0.69 JDDGAC_14875 prfC peptide chain release factor 3 — —
Escherichia coli ECRC101 0.47 MCAODC_10025 pepP Xaa-Pro aminopeptidase 0.69 MCAODC_01795 prfC peptide chain release factor 3 — —
Escherichia coli ECRC102 0.47 NIAGMN_17270 pepP Xaa-Pro aminopeptidase 0.69 NIAGMN_09130 prfC peptide chain release factor 3 — —
Escherichia coli ECRC101 0.47 OKFHMN_19505 pepP Xaa-Pro aminopeptidase 0.69 OKFHMN_11280 prfC peptide chain release factor 3 — —
Escherichia coli ECRC99 0.47 KEDOAH_08635 pepP Xaa-Pro aminopeptidase 0.69 KEDOAH_16865 prfC peptide chain release factor 3 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF3009 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.69 GFF1035 Peptide chain release factor 3 0.71 54
Escherichia coli BW25113 0.47 b2908 pepP proline aminopeptidase P II (NCBI) 0.69 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Pectobacterium carotovorum WPP14 0.47 HER17_RS19115 Xaa-Pro aminopeptidase 0.69 HER17_RS19065 peptide chain release factor 3 low > 75
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2960 Xaa-Pro aminopeptidase 0.70 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Ralstonia solanacearum PSI07 0.47 RPSI07_RS21505 Xaa-Pro aminopeptidase 0.60 RPSI07_RS07810 peptide chain release factor 3 — —
Pantoea sp. MT58 0.47 IAI47_03750 Xaa-Pro aminopeptidase 0.71 IAI47_03375 peptide chain release factor 3 low > 76
Enterobacter sp. TBS_079 0.46 MPMX20_03767 Xaa-Pro aminopeptidase 0.70 MPMX20_00673 Peptide chain release factor RF3 low > 85
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS07665 aminopeptidase P N-terminal domain-containing protein 0.61 ABZR87_RS23485 peptide chain release factor 3 low > 80
Ralstonia solanacearum GMI1000 0.46 RS_RS02535 Xaa-Pro aminopeptidase 0.61 RS_RS25080 peptide chain release factor 3 — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04247 aminopeptidase P Metallo peptidase. MEROPS family M24B 0.54 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS11710 Xaa-Pro aminopeptidase 0.61 RALBFv3_RS23345 peptide chain release factor 3 — —
Ralstonia solanacearum UW163 0.46 UW163_RS01875 Xaa-Pro aminopeptidase 0.61 UW163_RS16595 peptide chain release factor 3 — —
Alteromonas macleodii MIT1002 0.46 MIT1002_02984 Xaa-Pro aminopeptidase 0.69 MIT1002_01192 Peptide chain release factor 3 low > 70
Erwinia tracheiphila SCR3 0.46 LU632_RS05880 pepP Xaa-Pro aminopeptidase 0.71 LU632_RS02475 prfC peptide chain release factor 3 0.61 31
Rahnella sp. WP5 0.45 EX31_RS21495 Xaa-Pro aminopeptidase 0.70 EX31_RS04095 peptide chain release factor 3 — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003487 Xaa-Pro aminopeptidase 0.54 ABIE53_004717 peptide chain release factor 3 low > 113
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16575 Xaa-Pro aminopeptidase 0.54 BPHYT_RS34275 peptide chain release factor 3 low > 109
Dechlorosoma suillum PS 0.45 Dsui_1591 Xaa-Pro aminopeptidase 0.61 Dsui_2418 peptide chain release factor 3 low > 51
Variovorax sp. SCN45 0.44 GFF7179 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.52 GFF2045 Peptide chain release factor 3 low > 127
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26760 aminopeptidase P N-terminal domain-containing protein 0.54 QEN71_RS17200 peptide chain release factor 3 low > 153
Acidovorax sp. GW101-3H11 0.44 Ac3H11_652 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.52 Ac3H11_3041 Peptide chain release factor 3 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF2485 Xaa-Pro aminopeptidase (EC 3.4.11.9) 0.53 GFF768 Peptide chain release factor 3 low > 90
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_0075 pepP aminopeptidase P. Metallo peptidase. MEROPS family M24B 0.43 Synpcc7942_2365 prfC peptide chain release factor 3 low > 38
Shewanella loihica PV-4 0.39 Shew_2358 peptidase M24 (RefSeq) 0.69 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Shewanella amazonensis SB2B 0.39 Sama_1534 xaa-pro aminopeptidase (RefSeq) 0.70 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS22815 X-Pro aminopeptidase 0.46 CA265_RS18435 peptide chain release factor 3 0.62 11
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_0053 Xaa-Pro aminopeptidase 0.50 Echvi_0584 peptide chain release factor 3 low > 79
Bacteroides stercoris CC31F 0.19 HMPREF1181_RS00920 aminopeptidase P family protein 0.46 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Bacteroides ovatus ATCC 8483 0.18 BACOVA_01617 peptidase, M24 family 0.46 BACOVA_04458 peptide chain release factor 3 low > 94
Bacteroides thetaiotaomicron VPI-5482 0.17 BT2522 Xaa-Pro aminopeptidase (NCBI ptt file) 0.46 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS04225 aminopeptidase P family protein 0.47 ABI39_RS00385 peptide chain release factor 3 — —
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS14845 aminopeptidase P family protein 0.47 HMPREF1058_RS07935 peptide chain release factor 3 — —
Parabacteroides merdae CL09T00C40 0.13 HMPREF1078_RS02325 Xaa-Pro aminopeptidase 0.50 HMPREF1078_RS04145 peptide chain release factor 3 low > 61
Desulfovibrio vulgaris Hildenborough JW710 0.10 DVU0296 peptidase, M24 family (TIGR) 0.58 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55

Not shown: 5 genomes with orthologs for Psest_0175 only; 19 genomes with orthologs for Psest_3351 only