Conservation of cofitness between GFF1567 and GFF3004 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 1.0 GFF3004 Glycine cleavage system H protein 0.41 15
Klebsiella pneumoniae MKP103 0.90 KDGMDA_13830 4-aminobutyrate--2-oxoglutarate transaminase 0.91 KDGMDA_04375 glycine cleavage system protein GcvH low > 95
Escherichia coli BW25113 0.90 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) 0.99 b2904 gcvH glycine cleavage system protein H (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.89 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT 0.99 OHPLBJKB_00811 Glycine cleavage system H protein low > 74
Escherichia coli ECOR27 0.89 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.98 NOLOHH_11440 gcvH glycine cleavage system protein GcvH low > 76
Escherichia coli BL21 0.89 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent 0.99 ECD_02736 glycine cleavage complex lipoylprotein low > 61
Escherichia coli ECRC99 0.89 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.99 KEDOAH_08615 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC100 0.89 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.99 OKFHMN_19525 gcvH glycine cleavage system protein GcvH low > 79
Escherichia coli ECRC102 0.89 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.99 NIAGMN_17290 gcvH glycine cleavage system protein GcvH low > 80
Escherichia coli ECRC62 0.89 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.98 BNILDI_09975 gcvH glycine cleavage system protein GcvH low > 75
Escherichia coli ECRC98 0.89 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.99 JDDGAC_23165 gcvH glycine cleavage system protein GcvH low > 87
Escherichia coli ECRC101 0.89 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.99 MCAODC_10045 gcvH glycine cleavage system protein GcvH low > 87
Escherichia coli ECOR38 0.89 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.98 HEPCGN_18815 gcvH glycine cleavage system protein GcvH low > 88
Escherichia coli Nissle 1917 0.89 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase 0.99 ECOLIN_RS16170 glycine cleavage system protein GcvH low > 55
Escherichia fergusonii Becca 0.89 EFB2_01268 4-aminobutyrate aminotransferase GabT 0.99 EFB2_00998 Glycine cleavage system H protein low > 86
Pseudomonas aeruginosa PA14 0.75 IKLFDK_24130 4-aminobutyrate--2-oxoglutarate transaminase 0.64 IKLFDK_27400 glycine cleavage system protein GcvH low > 98
Pseudomonas aeruginosa MRSN321 0.75 DY961_RS21270 gabT;go_function=4-aminobutyrate 4-aminobutyrate--2-oxoglutarate transaminase 0.64 DY961_RS11940 gcvH;go_function=catalytic glycine cleavage system protein GcvH low > 100
Pseudomonas segetis P6 0.75 MPMX49_00505 5-aminovalerate aminotransferase DavT 0.65 MPMX49_04480 Glycine cleavage system H protein low > 75
Pseudomonas aeruginosa PUPa3 0.75 DQ20_RS38015 gabT;go_function=4-aminobutyrate 4-aminobutyrate--2-oxoglutarate transaminase 0.64 DQ20_RS50175 gcvH;go_function=catalytic glycine cleavage system protein GcvH low > 101
Pseudomonas sp. S08-1 0.75 OH686_11880 4-aminobutyrate transaminase 0.64 OH686_11170 glycine cleavage system H protein low > 80
Pseudomonas stutzeri RCH2 0.75 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type 0.62 Psest_0182 glycine cleavage system H protein low > 67
Pseudomonas lactucae CFBP13502 0.72 GEMAOFIL_00404 5-aminovalerate aminotransferase DavT 0.63 GEMAOFIL_05588 Glycine cleavage system H protein low > 96
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.62 PFLU_RS28910 glycine cleavage system protein GcvH low > 109
Pseudomonas fluorescens SBW25 0.72 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.62 PFLU_RS28910 glycine cleavage system protein GcvH low > 109
Pseudomonas sp. DMC3 0.72 GFF4255 5-aminovalerate aminotransferase DavT 0.65 GFF309 Glycine cleavage system H protein low > 89
Pseudomonas simiae WCS417 0.72 PS417_00900 4-aminobutyrate aminotransferase 0.63 PS417_27250 glycine cleavage system protein H low > 88
Pseudomonas sp. SVBP6 0.72 COO64_RS12480 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.65 COO64_RS00955 gcvH glycine cleavage system protein GcvH low > 93
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_10715 4-aminobutyrate aminotransferase 0.62 AO356_13040 glycine cleavage system protein H low > 104
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.66 Pf6N2E2_4486 Glycine cleavage system H protein low > 103
Pseudomonas sp. RS175 0.72 PFR28_04756 5-aminovalerate aminotransferase DavT 0.61 PFR28_04315 Glycine cleavage system H protein low > 88
Pseudomonas orientalis W4I3 0.72 QF045_RS03960 4-aminobutyrate--2-oxoglutarate transaminase 0.62 QF045_RS01620 glycine cleavage system protein GcvH low > 93
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.57 AO353_08730 glycine cleavage system protein H low > 101
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.62 PfGW456L13_903 Glycine cleavage system H protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.57 Pf1N1B4_2235 Glycine cleavage system H protein low > 87
Pseudomonas sp. BP01 0.71 JOY50_RS18510 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.63 JOY50_RS22410 gcvH glycine cleavage system protein GcvH low > 84
Pseudomonas putida KT2440 0.71 PP_0214 4-aminobutyrate aminotransferase 0.66 PP_5193 glycine cleavage system H protein 2 low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.61 Psyr_0247 glycine cleavage system H protein low > 86
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.61 Psyr_0247 glycine cleavage system H protein low > 86
Shewanella amazonensis SB2B 0.68 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) 0.81 Sama_2720 glycine cleavage system protein H (RefSeq) low > 62
Shewanella sp. ANA-3 0.65 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) 0.79 Shewana3_3500 glycine cleavage system protein H (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO1276 gabT 4-aminobutyrate aminotransferase (NCBI ptt file) 0.79 SO0780 gcvH glycine cleavage system H protein (NCBI ptt file) low > 76
Acidovorax sp. GW101-3H11 0.62 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.56 Ac3H11_166 Glycine cleavage system H protein low > 79
Variovorax sp. OAS795 0.62 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase 0.52 ABID97_RS19650 glycine cleavage system protein GcvH — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS21370 4-aminobutyrate aminotransferase 0.58 RR42_RS20065 glycine cleavage system protein H low > 128
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4294 4-aminobutyrate aminotransferase, prokaryotic type 0.95 EX28DRAFT_2956 glycine cleavage system H protein low > 76
Azospirillum brasilense Sp245 0.53 AZOBR_RS19630 4-aminobutyrate aminotransferase 0.52 AZOBR_RS10465 glycine cleavage system protein H — —
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS05420 4-aminobutyrate aminotransferase 0.46 HSERO_RS07915 glycine cleavage system protein H low > 78
Klebsiella michiganensis M5al 0.53 BWI76_RS26375 aspartate aminotransferase family protein 0.93 BWI76_RS23875 glycine cleavage system protein H 0.19 44
Azospirillum sp. SherDot2 0.53 MPMX19_04919 5-aminovalerate aminotransferase DavT 0.49 MPMX19_01030 Glycine cleavage system H protein low > 112
Enterobacter sp. TBS_079 0.52 MPMX20_04337 4-aminobutyrate aminotransferase PuuE 0.95 MPMX20_03763 Glycine cleavage system H protein low > 85
Pectobacterium carotovorum WPP14 0.52 HER17_RS09880 4-aminobutyrate--2-oxoglutarate transaminase 0.79 HER17_RS18000 glycine cleavage system protein GcvH low > 75
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS05190 4-aminobutyrate--2-oxoglutarate transaminase 0.52 ABZR87_RS03930 glycine cleavage system protein GcvH low > 80
Acinetobacter radioresistens SK82 0.52 MPMX26_01998 4-aminobutyrate aminotransferase PuuE 0.52 MPMX26_01479 Glycine cleavage system H protein low > 36
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS19980 4-aminobutyrate--2-oxoglutarate transaminase 0.57 QEN71_RS29210 glycine cleavage system protein GcvH 0.30 96
Variovorax sp. SCN45 0.51 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.53 GFF6477 Glycine cleavage system H protein — —
Pantoea agglomerans CFBP13505 P0401 0.51 PagCFBP13505_RS07790 4-aminobutyrate--2-oxoglutarate transaminase 0.81 PagCFBP13505_RS15930 glycine cleavage system protein GcvH low > 74
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_03179 4-aminobutyrate aminotransferase apoenzyme 0.59 H281DRAFT_02410 glycine cleavage system H protein low > 103
Serratia liquefaciens MT49 0.51 IAI46_22165 4-aminobutyrate--2-oxoglutarate transaminase 0.78 IAI46_20855 glycine cleavage system protein GcvH low > 87
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS09545 4-aminobutyrate--2-oxoglutarate transaminase 0.55 RALBFv3_RS08655 glycine cleavage system protein H 0.36 10
Ralstonia solanacearum UW163 0.51 UW163_RS04035 4-aminobutyrate--2-oxoglutarate transaminase 0.55 UW163_RS04955 glycine cleavage system protein H — —
Dickeya dianthicola ME23 0.51 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase 0.78 DZA65_RS03440 glycine cleavage system protein GcvH low > 75
Pantoea sp. MT58 0.51 IAI47_19475 4-aminobutyrate--2-oxoglutarate transaminase 0.83 IAI47_03770 glycine cleavage system protein GcvH low > 76
Dickeya dadantii 3937 0.50 DDA3937_RS11830 4-aminobutyrate--2-oxoglutarate transaminase 0.72 DDA3937_RS03250 glycine cleavage system protein GcvH low > 74
Dickeya dianthicola 67-19 0.50 HGI48_RS11860 4-aminobutyrate--2-oxoglutarate transaminase 0.78 HGI48_RS03395 glycine cleavage system protein GcvH low > 71
Sinorhizobium meliloti 1021 0.50 SM_b21186 4-aminobutyrate aminotransferase 0.51 SMc02048 glycine cleavage system protein H low > 103
Paraburkholderia graminis OAS925 0.50 ABIE53_004117 4-aminobutyrate aminotransferase 0.60 ABIE53_000237 glycine cleavage system H protein low > 113
Ralstonia solanacearum PSI07 0.50 RPSI07_RS23805 4-aminobutyrate--2-oxoglutarate transaminase 0.54 RPSI07_RS08580 glycine cleavage system protein H low > 81
Ralstonia solanacearum GMI1000 0.50 RS_RS00145 4-aminobutyrate--2-oxoglutarate transaminase 0.55 RS_RS16505 glycine cleavage system protein H low > 80
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS22435 4-aminobutyrate aminotransferase 0.59 BPHYT_RS19325 glycine cleavage system H protein low > 109
Rhodopseudomonas palustris CGA009 0.50 TX73_012015 4-aminobutyrate--2-oxoglutarate transaminase 0.45 TX73_019930 glycine cleavage system protein GcvH low > 86
Rhizobium sp. OAE497 0.50 ABIE40_RS00145 4-aminobutyrate--2-oxoglutarate transaminase 0.49 ABIE40_RS09945 glycine cleavage system protein GcvH low > 107
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF2029 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.52 GFF5214 Glycine cleavage system H protein low > 90
Acinetobacter baumannii LAC-4 0.49 RR41_RS01110 4-aminobutyrate--2-oxoglutarate transaminase 0.52 RR41_RS11930 glycine cleavage system protein GcvH — —
Shewanella loihica PV-4 0.49 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) 0.78 Shew_3063 glycine cleavage system protein H (RefSeq) low > 60
Rahnella sp. WP5 0.48 EX31_RS00095 4-aminobutyrate--2-oxoglutarate transaminase 0.77 EX31_RS21515 glycine cleavage system protein GcvH low > 89
Castellaniella sp019104865 MT123 0.48 ABCV34_RS01765 4-aminobutyrate--2-oxoglutarate transaminase 0.52 ABCV34_RS08840 glycine cleavage system protein GcvH low > 48
Marinobacter adhaerens HP15 0.47 HP15_3708 4-aminobutyrate aminotransferase 0.59 HP15_459 glycine cleavage H-protein, subgroup low > 73
Erwinia amylovora T8 0.46 OLJFJH_11345 4-aminobutyrate--2-oxoglutarate transaminase 0.73 OLJFJH_08780 glycine cleavage system protein GcvH low > 58
Mycobacterium tuberculosis H37Rv 0.34 Rv2589 4-aminobutyrate aminotransferase GabT (gamma-amino-N-butyrate transaminase) (GABA transaminase) (glutamate:succinic semialdehyde transaminase) (GABA aminotransferase) (GABA-at) 0.51 Rv1826 Probable glycine cleavage system H protein GcvH — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS04275 acetyl ornithine aminotransferase family protein 0.55 LRK55_RS05275 glycine cleavage system protein GcvH low > 63
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS04500 acetyl ornithine aminotransferase family protein 0.55 LRK54_RS05505 glycine cleavage system protein GcvH low > 59
Lysobacter sp. OAE881 0.24 ABIE51_RS02780 aspartate aminotransferase family protein 0.55 ABIE51_RS16360 glycine cleavage system protein GcvH low > 62

Not shown: 0 genomes with orthologs for GFF1567 only; 39 genomes with orthologs for GFF3004 only