| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF4142 | | transcriptional regulator, Crp/Fnr family | 1.0 | GFF1923 | | Nitrogen regulatory protein P-II | 0.49 | 1 |
| Acidovorax sp. GW101-3H11 | 0.81 | Ac3H11_975 | | transcriptional regulator, Crp/Fnr family | 0.93 | Ac3H11_3402 | | Nitrogen regulatory protein P-II | — | — |
| Dechlorosoma suillum PS | 0.68 | Dsui_1646 | | cAMP-binding protein | 0.87 | Dsui_0764 | | nitrogen regulatory protein PII | low | > 51 |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_23940 | | Crp/Fnr family transcriptional regulator | 0.82 | AO356_12700 | | transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_1516 | | transcriptional regulator, Crp/Fnr family | 0.82 | Pf6N2E2_4411 | | Nitrogen regulatory protein P-II, glnK | — | — |
| Pseudomonas sp. RS175 | 0.55 | PFR28_02314 | | Fumarate and nitrate reduction regulatory protein | 0.82 | PFR28_04383 | | Nitrogen regulatory protein P-II 2 | — | — |
| Pseudomonas simiae WCS417 | 0.54 | PS417_15825 | | Crp/Fnr family transcriptional regulator | 0.82 | PS417_27620 | | nitrogen regulatory protein P-II 1 | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.54 | AO353_19870 | | Crp/Fnr family transcriptional regulator | 0.82 | AO353_09075 | | transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.53 | Pf1N1B4_4177 | | transcriptional regulator, Crp/Fnr family | 0.82 | Pf1N1B4_2166 | | Nitrogen regulatory protein P-II, glnK | — | — |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS11180 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.84 | ABZR87_RS06695 | | P-II family nitrogen regulator | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS09585 | | Crp/Fnr family transcriptional regulator | 0.84 | RR42_RS01755 | | nitrogen regulatory protein P-II 1 | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS36970 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.88 | QEN71_RS01400 | | P-II family nitrogen regulator | low | > 153 |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS13110 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.84 | UW163_RS02735 | | nitrogen regulatory protein P-II 1 | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS15650 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.84 | RALBFv3_RS10845 | | nitrogen regulatory protein P-II 1 | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.52 | RPSI07_RS17705 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.84 | RPSI07_RS22465 | | nitrogen regulatory protein P-II 1 | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS06430 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.85 | RS_RS01685 | | nitrogen regulatory protein P-II 1 | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_01640 | | transcriptional regulator, Crp/Fnr family | 0.88 | H281DRAFT_02013 | | nitrogen regulatory protein P-II family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS31300 | | Crp/Fnr family transcriptional regulator | 0.88 | BPHYT_RS02545 | | nitrogen regulatory protein P-II 1 | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS12690 | | transcriptional regulator | 0.87 | HSERO_RS00420 | | nitrogen regulatory protein P-II 1 | — | — |
| Pseudomonas putida KT2440 | 0.45 | PP_3287 | | transcriptional regulator with 4Fe-4S cluster; Crp/Fnr family | 0.82 | PP_5234 | | activator of NRII(GlnL/NtrB) phosphatase | — | — |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_02240 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | OKFHMN_08265 | glnK | P-II family nitrogen regulator | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_18090 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | BNILDI_22615 | glnK | P-II family nitrogen regulator | — | — |
| Escherichia coli BW25113 | 0.43 | b1334 | fnr | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | 0.73 | b0450 | glnK | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_04785 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | JDDGAC_11920 | glnK | P-II family nitrogen regulator | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_26410 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | NIAGMN_06320 | glnK | P-II family nitrogen regulator | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_19940 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | NOLOHH_01200 | glnK | P-II family nitrogen regulator | — | — |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS08005 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | ECOLIN_RS02695 | | P-II family nitrogen regulator | — | — |
| Escherichia fergusonii Becca | 0.43 | EFB2_02593 | | Fumarate and nitrate reduction regulatory protein | 0.73 | EFB2_03607 | | Nitrogen regulatory protein P-II 2 | low | > 86 |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_26530 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | KEDOAH_19700 | glnK | P-II family nitrogen regulator | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_25925 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | HEPCGN_06880 | glnK | P-II family nitrogen regulator | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_02348 | | Fumarate and nitrate reduction regulatory protein | 0.73 | OHPLBJKB_03223 | | Nitrogen regulatory protein P-II 2 | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF2656 | | Fumarate and nitrate reduction regulatory protein | 0.73 | GFF4367 | | Nitrogen regulatory protein P-II, glnK | low | > 78 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_16030 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.73 | MCAODC_27490 | glnK | P-II family nitrogen regulator | — | — |
| Alteromonas macleodii MIT1002 | 0.41 | MIT1002_02137 | | Fumarate and nitrate reduction regulatory protein | 0.80 | MIT1002_00416 | | Nitrogen regulatory protein P-II 2 | low | > 70 |
| Shewanella amazonensis SB2B | 0.41 | Sama_1799 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.80 | Sama_0650 | | nitrogen regulatory protein P-II (RefSeq) | low | > 62 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.82 | PFLU_RS29305 | | P-II family nitrogen regulator | — | — |
| Shewanella loihica PV-4 | 0.41 | Shew_1993 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.79 | Shew_0846 | | nitrogen regulatory protein P-II (RefSeq) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.82 | PFLU_RS29305 | | P-II family nitrogen regulator | — | — |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS10525 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.74 | HER17_RS15790 | | P-II family nitrogen regulator | low | > 75 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS10950 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.74 | DDA3937_RS05695 | | P-II family nitrogen regulator | low | > 74 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_02245 | | Fumarate and nitrate reduction regulatory protein | 0.83 | OH686_13755 | | Nitrogen regulatory protein P-II, GlnK | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_2538 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | 0.83 | Psest_3773 | | Nitrogen regulatory protein PII | — | — |
| Rahnella sp. WP5 | 0.41 | EX31_RS07200 | | FNR family transcription factor | 0.74 | EX31_RS22315 | | P-II family nitrogen regulator | low | > 89 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_2115 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.77 | Shewana3_3532 | | nitrogen regulatory protein P-II (RefSeq) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_4071 | | Fumarate and nitrate reduction regulatory protein | 0.82 | PfGW456L13_837 | | Nitrogen regulatory protein P-II, glnK | — | — |
| Shewanella oneidensis MR-1 | 0.40 | SO2356 | etrA | electron transport regulator a (NCBI ptt file) | 0.77 | SO3819 | | nitrogen regulatory protein P-II (NCBI ptt file) | low | > 76 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | 0.82 | Psyr_0190 | | nitrogen regulatory protein P-II | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | 0.82 | Psyr_0190 | | nitrogen regulatory protein P-II | — | — |
| Marinobacter adhaerens HP15 | 0.40 | HP15_634 | | transcriptional regulator, Crp/Fnr family | 0.83 | HP15_275 | | nitrogen regulatory protein PII | — | — |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS03805 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.76 | ABIE51_RS00145 | | P-II family nitrogen regulator | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.38 | OKGIIK_00820 | | CRP-like protein Clp | 0.83 | OKGIIK_13340 | glnK | P-II family nitrogen regulator | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.35 | LRK54_RS14095 | | cyclic nucleotide-binding domain-containing protein | 0.83 | LRK54_RS10565 | | P-II family nitrogen regulator | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS13815 | | cyclic nucleotide-binding domain-containing protein | 0.83 | LRK55_RS10205 | | P-II family nitrogen regulator | low | > 63 |
| Variovorax sp. SCN45 | 0.29 | GFF6947 | | transcriptional regulator, Crp/Fnr family | 0.94 | GFF5120 | | Nitrogen regulatory protein P-II, GlnK | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS04345 | | cyclic nucleotide-binding domain-containing protein | 0.84 | ABZR86_RS13505 | | P-II family nitrogen regulator | low | > 74 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_00212 | | Nitrogen fixation regulation protein FixK | 0.79 | MPMX19_01554 | | Nitrogen regulatory protein P-II | — | — |
| Azospirillum brasilense Sp245 | 0.27 | AZOBR_RS01145 | | Crp/Fnr family transcriptional regulator | 0.78 | AZOBR_RS07100 | | nitrogen regulatory protein P-II 1 | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.24 | Xcc-8004.2952.1 | | transcriptional regulator, Crp/Fnr family | 0.82 | Xcc-8004.248.1 | | Nitrogen regulatory protein P-II | low | > 74 |
| Rhodospirillum rubrum S1H | 0.24 | Rru_A3322 | | Transcriptional Regulator, Crp/Fnr family (NCBI) | 0.78 | Rru_A2085 | | Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) | 0.75 | 38 |
| Magnetospirillum magneticum AMB-1 | 0.21 | AMB_RS22105 | | transcriptional regulator | 0.82 | AMB_RS00075 | | P-II family nitrogen regulator | low | > 64 |
| Agrobacterium fabrum C58 | 0.19 | Atu1602 | | transcriptional activator, Crp family | 0.78 | Atu2757 | | nitrogen regulatory protein PII | low | > 89 |
| Phaeobacter inhibens DSM 17395 | 0.17 | PGA1_c30140 | | transcriptional activator protein FnrL | 0.71 | PGA1_c18710 | | nitrogen regulatory protein P-II | — | — |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS06085 | | Crp/Fnr family transcriptional regulator | 0.78 | ABIE40_RS09340 | | P-II family nitrogen regulator | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.17 | CCNA_00789 | | hypoxia transcriptional regulator FixK | 0.73 | CCNA_02046 | | nitrogen regulatory protein P-II | — | — |
| Caulobacter crescentus NA1000 | 0.17 | CCNA_00789 | | hypoxia transcriptional regulator FixK | 0.73 | CCNA_02046 | | nitrogen regulatory protein P-II | — | — |
| Sinorhizobium meliloti 1021 | 0.16 | SMa1225 | | transcriptional regulator FixK | 0.78 | SMc00947 | | nitrogen regulatory protein PII | — | — |
| Rhodopseudomonas palustris CGA009 | 0.16 | TX73_022020 | | helix-turn-helix domain-containing protein | 0.77 | TX73_015385 | | P-II family nitrogen regulator | — | — |
| Bosea sp. OAE506 | 0.16 | ABIE41_RS04120 | | Crp/Fnr family transcriptional regulator | 0.78 | ABIE41_RS04760 | | P-II family nitrogen regulator | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.15 | Dshi_0660 | | transcriptional regulator, Crp/Fnr family (RefSeq) | 0.71 | Dshi_1838 | | nitrogen regulatory protein P-II (RefSeq) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.15 | Ga0059261_1530 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | 0.75 | Ga0059261_3385 | | nitrogen regulatory protein P-II family | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.12 | A4249_RS05295 | | Crp/Fnr family transcriptional regulator | 0.76 | A4249_RS05675 | | P-II family nitrogen regulator | — | — |
Not shown: 12 genomes with orthologs for GFF4142 only; 8 genomes with orthologs for GFF1923 only