| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_3310 | | pirin family protein | 1.0 | HP15_1817 | | recombination factor protein RarA | 0.31 | 2 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_2943 | | Pirin-related protein | 0.62 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 67 |
| Pseudomonas fluorescens FW300-N2E3 | 0.54 | AO353_02355 | | quercetin 2,3-dioxygenase | 0.62 | AO353_27640 | | recombination factor protein RarA | low | > 101 |
| Castellaniella sp019104865 MT123 | 0.53 | ABCV34_RS00980 | | pirin family protein | 0.52 | ABCV34_RS07220 | | replication-associated recombination protein A | low | > 48 |
| Pseudomonas sp. S08-1 | 0.52 | OH686_19790 | | Pirin | 0.63 | OH686_00270 | | Replication-associated recombination protein RarA | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_1626 | | Pirin, N-terminal:Pirin, C-terminal | 0.62 | Psyr_3177 | | Recombination protein MgsA | 0.36 | 72 |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_1626 | | Pirin, N-terminal:Pirin, C-terminal | 0.62 | Psyr_3177 | | Recombination protein MgsA | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS14920 | | pirin family protein | 0.53 | ABZR86_RS01825 | | replication-associated recombination protein A | low | > 74 |
| Dechlorosoma suillum PS | 0.50 | Dsui_2072 | | Pirin-related protein | 0.51 | Dsui_1694 | | AAA ATPase | low | > 51 |
| Ralstonia solanacearum PSI07 | 0.50 | RPSI07_RS21315 | | pirin family protein | 0.54 | RPSI07_RS13205 | | replication-associated recombination protein A | low | > 81 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.50 | Xcc-8004.1757.1 | | Pirin | 0.53 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS04805 | | pirin | 0.54 | RR42_RS04355 | | recombination factor protein RarA | low | > 128 |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS14465 | | pirin family protein | 0.49 | ABIE51_RS11445 | | replication-associated recombination protein A | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_15400 | yhaK | quercetin 2,3-dioxygenase | 0.52 | OKGIIK_07580 | rarA | recombination factor protein RarA | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS08640 | | pirin family protein | 0.52 | LRK54_RS17320 | | replication-associated recombination protein A | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS08405 | | pirin family protein | 0.52 | LRK55_RS17545 | | replication-associated recombination protein A | low | > 63 |
| Ralstonia sp. UNC404CL21Col | 0.49 | ABZR87_RS07860 | | pirin family protein | 0.55 | ABZR87_RS16030 | | replication-associated recombination protein A | low | > 80 |
| Variovorax sp. SCN45 | 0.49 | GFF3299 | | Pirin | 0.52 | GFF6034 | | Replication-associated recombination protein RarA | low | > 127 |
| Ralstonia solanacearum GMI1000 | 0.49 | RS_RS02705 | | pirin family protein | 0.53 | RS_RS11735 | | replication-associated recombination protein A | low | > 80 |
| Ralstonia solanacearum UW163 | 0.49 | UW163_RS01705 | | pirin family protein | 0.54 | UW163_RS09525 | | replication-associated recombination protein A | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.49 | RALBFv3_RS11885 | | pirin family protein | 0.54 | RALBFv3_RS04145 | | replication-associated recombination protein A | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_01938 | | Quercetin 2,3-dioxygenase | 0.54 | MIT1002_02178 | | Replication-associated recombination protein A | low | > 70 |
| Variovorax sp. OAS795 | 0.48 | ABID97_RS02750 | | pirin family protein | 0.54 | ABID97_RS07835 | | replication-associated recombination protein A | low | > 91 |
| Azospirillum brasilense Sp245 | 0.47 | AZOBR_RS03160 | | pirin | 0.42 | AZOBR_RS06885 | | ATPase AAA | low | > 97 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_02222 | | hypothetical protein | 0.44 | MPMX19_01528 | | Replication-associated recombination protein A | low | > 112 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS12660 | | pirin | 0.54 | HSERO_RS09515 | | ATPase AAA | low | > 78 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_18960 | | quercetin 2,3-dioxygenase | 0.58 | CSW01_05630 | | replication-associated recombination protein A | low | > 62 |
| Caulobacter crescentus NA1000 | 0.43 | CCNA_00514 | | pirin | 0.42 | CCNA_01342 | | ATPase, AAA family | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.43 | CCNA_00514 | | pirin | 0.42 | CCNA_01342 | | ATPase, AAA family | 0.55 | 34 |
| Desulfovibrio vulgaris Miyazaki F | 0.38 | DvMF_2793 | | Pirin domain protein (RefSeq) | 0.32 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | low | > 51 |
| Shewanella loihica PV-4 | 0.37 | Shew_0700 | | pirin domain-containing protein (RefSeq) | 0.54 | Shew_2022 | | recombination factor protein RarA (RefSeq) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.37 | Dshi_2143 | | Pirin domain protein (RefSeq) | 0.42 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.36 | PGA1_c08680 | | pirin-like protein | 0.42 | PGA1_c01930 | | replication-associated recombination protein A | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_001653 | | redox-sensitive bicupin YhaK (pirin superfamily) | 0.54 | ABIE53_001292 | | putative ATPase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS06945 | | pirin | 0.54 | BPHYT_RS05100 | | ATPase AAA | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.34 | H281DRAFT_04965 | | hypothetical protein | 0.53 | H281DRAFT_00180 | | Recombination protein MgsA | low | > 103 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_3385 | | hypoxanthine phosphoribosyltransferase (RefSeq) | 0.55 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.33 | SO0895 | | pirin family protein (NCBI ptt file) | 0.55 | SO2308 | | ATPase, AAA family (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.33 | Sama_2994 | | pirin family protein (RefSeq) | 0.54 | Sama_1774 | | recombination factor protein RarA (RefSeq) | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS23825 | | pirin family protein | 0.54 | QEN71_RS03415 | | replication-associated recombination protein A | low | > 153 |
| Kangiella aquimarina DSM 16071 | 0.32 | B158DRAFT_1303 | | Pirin-related protein | 0.59 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 40 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.31 | CA264_09175 | | nuclease PIN | 0.43 | CA264_02215 | | AAA family ATPase | low | > 74 |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_21200 | | quercetin 2,3-dioxygenase | 0.61 | AO356_22185 | | recombination factor protein RarA | low | > 104 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_02862 | | hypothetical protein | 0.61 | PFR28_02606 | | Replication-associated recombination protein A | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.29 | Pf6N2E2_26 | | Pirin | 0.61 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | — | — |
| Enterobacter asburiae PDN3 | 0.29 | EX28DRAFT_1900 | | Pirin-related protein | 0.59 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.29 | PfGW456L13_2403 | | Pirin | 0.61 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_126 | | Pirin | 0.61 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.28 | PFLU_RS17750 | | pirin family protein | 0.61 | PFLU_RS18520 | | replication-associated recombination protein A | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.28 | PFLU_RS17750 | | pirin family protein | 0.61 | PFLU_RS18520 | | replication-associated recombination protein A | low | > 109 |
| Enterobacter sp. TBS_079 | 0.28 | MPMX20_01712 | | hypothetical protein | 0.59 | MPMX20_01554 | | Replication-associated recombination protein A | low | > 85 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.28 | CA265_RS23660 | | short-chain dehydrogenase | 0.42 | CA265_RS22400 | | AAA family ATPase | low | > 88 |
| Klebsiella michiganensis M5al | 0.28 | BWI76_RS10875 | | quercetin 2,3-dioxygenase | 0.59 | BWI76_RS09670 | | recombination factor protein RarA | low | > 92 |
| Pseudomonas simiae WCS417 | 0.27 | PS417_15945 | | quercetin 2,3-dioxygenase | 0.61 | PS417_16480 | | recombination factor protein RarA | — | — |
| Pseudomonas putida KT2440 | 0.27 | PP_3403 | | putative Quercetin 2,3-dioxygenase | 0.63 | PP_4002 | | DNA-dependent ATPase required for recombination | low | > 96 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS13410 | | pirin family protein | 0.42 | A4249_RS07890 | | replication-associated recombination protein A | low | > 48 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.27 | GFF4886 | | FIG01046265: hypothetical protein | 0.58 | GFF4896 | | FIG065221: Holliday junction DNA helicase | low | > 78 |
| Dickeya dianthicola 67-19 | 0.27 | HGI48_RS03995 | | pirin family protein | 0.58 | HGI48_RS09620 | | replication-associated recombination protein A | low | > 71 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_04565 | | pirin family protein | 0.57 | IAI46_08570 | | replication-associated recombination protein A | low | > 86 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.27 | ABZR88_RS02850 | | pirin family protein | 0.42 | ABZR88_RS20285 | | replication-associated recombination protein A | low | > 71 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.23 | GFF1939 | | Pirin | 0.44 | GFF777 | | FIG065221: Holliday junction DNA helicase | low | > 90 |
Not shown: 1 genomes with orthologs for HP15_3310 only; 39 genomes with orthologs for HP15_1817 only