Conservation of cofitness between PS417_25395 and PS417_06510 in Pseudomonas simiae WCS417

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_25395 excinuclease ABC subunit A 1.0 PS417_06510 ATP-dependent DNA helicase DinG 0.43 12
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.99 PFLU_RS06540 ATP-dependent DNA helicase DinG low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.99 PFLU_RS06540 ATP-dependent DNA helicase DinG low > 109
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_05194 UvrABC system protein A 0.99 GEMAOFIL_01464 ATP-dependent DNA helicase DinG low > 93
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.97 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 — —
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.99 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.34 26
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06855 ABC-ATPase UvrA 0.98 AO353_17020 ATP-dependent DNA helicase DinG 0.72 3
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_14785 ABC-ATPase UvrA 0.99 AO356_05425 ATP-dependent DNA helicase DinG 0.84 3
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.99 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.66 6
Pseudomonas sp. RS175 0.97 PFR28_03974 UvrABC system protein A 0.98 PFR28_00520 ATP-dependent DNA helicase DinG low > 88
Pseudomonas sp. DMC3 0.97 GFF3792 UvrABC system protein A 0.97 GFF2161 ATP-dependent DNA helicase DinG low > 89
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.93 Psyr_3856 Helicase c2 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.93 Psyr_3856 Helicase c2 0.21 82
Pseudomonas sp. SVBP6 0.95 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.93 COO64_RS17020 dinG ATP-dependent DNA helicase DinG low > 93
Pseudomonas sp. BP01 0.93 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.90 JOY50_RS24145 dinG ATP-dependent DNA helicase DinG low > 84
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.89 PP_1125 putative Helicase — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.89 OH686_04830 ATP-dependent helicase DinG/Rad3 low > 80
Pseudomonas aeruginosa PA14 0.91 IKLFDK_21795 excinuclease ABC subunit UvrA 0.88 IKLFDK_04780 ATP-dependent DNA helicase DinG low > 100
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.88 Psest_2857 Rad3-related DNA helicases 0.30 23
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.22 NIAGMN_04325 dinG ATP-dependent DNA helicase DinG low > 80
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.22 JDDGAC_09915 dinG ATP-dependent DNA helicase DinG low > 87
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.22 EFB2_03306 ATP-dependent DNA helicase DinG 0.62 70
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.22 MCAODC_25495 dinG ATP-dependent DNA helicase DinG low > 88
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.22 KEDOAH_21630 dinG ATP-dependent DNA helicase DinG — —
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.22 ECOLIN_RS04255 ATP-dependent DNA helicase DinG — —
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.22 OKFHMN_06280 dinG ATP-dependent DNA helicase DinG low > 79
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.22 HEPCGN_01765 dinG ATP-dependent DNA helicase DinG low > 88
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.22 BNILDI_20910 dinG ATP-dependent DNA helicase DinG 0.63 28
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.22 b0799 dinG ATP-dependent DNA helicase (NCBI) 0.24 34
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.22 NOLOHH_22630 dinG ATP-dependent DNA helicase DinG low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.22 OHPLBJKB_02914 putative ATP-dependent helicase DinG low > 74
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.22 ECD_00766 ATP-dependent DNA helicase 0.47 56
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.22 GFF697 ATP-dependent helicase DinG/Rad3 low > 78
Klebsiella pneumoniae MKP103 0.77 KDGMDA_10400 excinuclease ABC subunit UvrA 0.22 KDGMDA_17185 ATP-dependent DNA helicase DinG low > 95
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.21 DDA3937_RS08765 ATP-dependent DNA helicase DinG low > 74
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.21 EX31_RS19020 ATP-dependent DNA helicase DinG low > 89
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.21 HGI48_RS08850 ATP-dependent DNA helicase DinG low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.21 DZA65_RS09155 ATP-dependent DNA helicase DinG low > 75
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.44 HP15_1856 helicase c2 0.75 12
Klebsiella michiganensis M5al 0.76 BWI76_RS01950 excinuclease ABC subunit A 0.22 BWI76_RS08920 ATP-dependent DNA helicase DinG low > 92
Enterobacter sp. TBS_079 0.76 MPMX20_00276 UvrABC system protein A 0.22 MPMX20_01426 ATP-dependent DNA helicase DinG low > 85
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.15 B158DRAFT_2492 Rad3-related DNA helicases 0.54 26
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.22 HER17_RS13230 ATP-dependent DNA helicase DinG low > 75
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.22 EX28DRAFT_2193 Rad3-related DNA helicases low > 76
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.21 PagCFBP13505_RS04025 ATP-dependent DNA helicase DinG low > 74
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.15 MIT1002_02593 putative ATP-dependent helicase DinG low > 70
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.22 IAI46_07445 ATP-dependent DNA helicase DinG low > 86
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.31 CSW01_09290 ATP-dependent DNA helicase DinG low > 62
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.20 IAI47_13295 ATP-dependent DNA helicase DinG low > 76
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.33 SO1819 dinG ATP-dependent helicase DinG (NCBI ptt file) low > 76
Erwinia amylovora T8 0.75 OLJFJH_03425 excinuclease ABC subunit UvrA 0.21 OLJFJH_16560 ATP-dependent DNA helicase DinG low > 58
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.31 Sama_1249 dinG ATP-dependent DNA helicase DinG (RefSeq) low > 62
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.34 Shewana3_2630 dinG ATP-dependent DNA helicase DinG (RefSeq) low > 73
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA 0.20 IJEDHG_19865 dinG ATP-dependent DNA helicase DinG low > 61
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.21 LU632_RS09400 dinG ATP-dependent DNA helicase DinG low > 74
Shewanella loihica PV-4 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.32 Shew_2483 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.77 12
Dechlorosoma suillum PS 0.74 Dsui_1622 excinuclease ABC, A subunit 0.14 Dsui_2149 DNA helicase, Rad3 0.73 16
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.29 ABZR86_RS16845 ATP-dependent DNA helicase DinG 0.67 28
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.25 Xcc-8004.5017.1 ATP-dependent helicase DinG/Rad3 low > 74
Methylophilus sp. DMC18 0.71 GFF2008 UvrABC system protein A 0.14 GFF2564 putative ATP-dependent DNA helicase YoaA low > 43
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.29 LRK53_RS03855 ATP-dependent DNA helicase DinG low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.29 LRK55_RS10710 ATP-dependent DNA helicase DinG low > 63
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.29 LRK54_RS11005 ATP-dependent DNA helicase DinG low > 59
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.29 OKGIIK_12870 dinG ATP-dependent DNA helicase DinG low > 52
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.14 HSERO_RS14855 helicase low > 78
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.09 RPSI07_RS15960 ATP-dependent DNA helicase — —
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.09 RS_RS08195 ATP-dependent DNA helicase low > 80
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.15 RR42_RS07580 helicase 0.66 9
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.14 QEN71_RS06060 ATP-dependent DNA helicase low > 153
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.14 BPHYT_RS12495 helicase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.14 H281DRAFT_00533 ATP-dependent DNA helicase DinG low > 103
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.09 ABIE53_002724 ATP-dependent DNA helicase DinG low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.27 GFF2695 ATP-dependent helicase DinG/Rad3 low > 90
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.13 ABID97_RS14180 ATP-dependent DNA helicase low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.27 Ac3H11_4422 ATP-dependent helicase DinG/Rad3 — —
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.09 ABCV34_RS01875 ATP-dependent DNA helicase low > 48
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.05 CCNA_02118 ATP-dependent helicase, dinG family low > 66
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.05 CCNA_02118 ATP-dependent helicase, dinG family low > 67
Mycobacterium tuberculosis H37Rv 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.09 Rv1329c Probable ATP-dependent helicase DinG low > 58

Not shown: 40 genomes with orthologs for PS417_25395 only; 0 genomes with orthologs for PS417_06510 only