| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rahnella sp. WP5 | 1.0 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.0 | EX31_RS20495 | | outer membrane protein assembly factor BamB | 0.64 | 12 |
| Serratia liquefaciens MT49 | 0.72 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.85 | IAI46_19260 | | outer membrane protein assembly factor BamB | 0.51 | 60 |
| Pectobacterium carotovorum WPP14 | 0.66 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.80 | HER17_RS06115 | | outer membrane protein assembly factor BamB | — | — |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | HGI48_RS15560 | | outer membrane protein assembly factor BamB | low | > 71 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | DDA3937_RS15450 | | outer membrane protein assembly factor BamB | low | > 74 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | DZA65_RS16635 | | outer membrane protein assembly factor BamB | low | > 75 |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | MPMX20_03390 | | Outer membrane protein assembly factor BamB | low | > 85 |
| Enterobacter asburiae PDN3 | 0.61 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.74 | EX28DRAFT_0132 | | outer membrane assembly lipoprotein YfgL | 0.50 | 2 |
| Pantoea sp. MT58 | 0.60 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | IAI47_05070 | | outer membrane protein assembly factor BamB | low | > 76 |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | HEPCGN_20860 | bamB | outer membrane protein assembly factor BamB | low | > 87 |
| Escherichia coli Nissle 1917 | 0.60 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | ECOLIN_RS14275 | | outer membrane protein assembly factor BamB | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.60 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | OHPLBJKB_01197 | | Outer membrane protein assembly factor BamB | low | > 73 |
| Escherichia coli BW25113 | 0.60 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 0.75 | b2512 | yfgL | protein assembly complex, lipoprotein component (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.60 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | OKFHMN_21740 | bamB | outer membrane protein assembly factor BamB | low | > 80 |
| Escherichia coli ECRC101 | 0.60 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | MCAODC_12270 | bamB | outer membrane protein assembly factor BamB | low | > 87 |
| Escherichia coli ECRC102 | 0.60 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | NIAGMN_19510 | bamB | outer membrane protein assembly factor BamB | — | — |
| Escherichia coli ECRC98 | 0.60 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | JDDGAC_25415 | bamB | outer membrane protein assembly factor BamB | low | > 86 |
| Escherichia coli ECRC99 | 0.60 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | KEDOAH_06480 | bamB | outer membrane protein assembly factor BamB | — | — |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | NOLOHH_13390 | bamB | outer membrane protein assembly factor BamB | low | > 75 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | BNILDI_12190 | bamB | outer membrane protein assembly factor BamB | low | > 75 |
| Escherichia fergusonii Becca | 0.59 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.76 | EFB2_01378 | | Outer membrane protein assembly factor BamB | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.75 | GFF2409 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | low | > 78 |
| Escherichia coli BL21 | 0.59 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 0.75 | ECD_02404 | | BamABCDE complex OM biogenesis lipoprotein | low | > 61 |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.73 | BWI76_RS21070 | | outer membrane protein assembly factor BamB | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.80 | LU632_RS17785 | bamB | outer membrane protein assembly factor BamB | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.42 | CSW01_03955 | | outer membrane protein assembly factor BamB | — | — |
| Shewanella amazonensis SB2B | 0.41 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.38 | Sama_2362 | | outer membrane protein assembly complex subunit YfgL (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.41 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.38 | SO3309 | | PQQ enzyme repeat domain protein (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.38 | Shewana3_1232 | | outer membrane protein assembly complex subunit YfgL (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.40 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.40 | Shew_1293 | | outer membrane protein assembly complex subunit YfgL (RefSeq) | — | — |
| Kangiella aquimarina DSM 16071 | 0.36 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.30 | B158DRAFT_1155 | | Beta-barrel assembly machine subunit BamB | — | — |
| Marinobacter adhaerens HP15 | 0.34 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | 0.25 | HP15_1496 | | pyrrolo-quinoline quinone | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.33 | ABZR86_RS05435 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas stutzeri RCH2 | 0.34 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.27 | Psest_1265 | | outer membrane assembly lipoprotein YfgL | — | — |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | LRK55_RS18085 | | outer membrane protein assembly factor BamB | — | — |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.17 | MPMX26_00432 | | Outer membrane protein assembly factor BamB | low | > 36 |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.22 | ABCV34_RS02635 | | outer membrane protein assembly factor BamB | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | LRK54_RS00090 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas sp. S08-1 | 0.32 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.25 | OH686_17545 | | outer membrane assembly lipoprotein YfgL | — | — |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | OKGIIK_07120 | bamB | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_19055 | | 23S rRNA methyltransferase | 0.26 | AO356_06575 | | outer membrane protein assembly factor BamB | low | > 104 |
| Pseudomonas sp. RS175 | 0.31 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.26 | PFR28_00300 | | Outer membrane protein assembly factor BamB | — | — |
| Dechlorosoma suillum PS | 0.31 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.24 | Dsui_3139 | | outer membrane assembly lipoprotein YfgL | low | > 51 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.26 | Pf6N2E2_3175 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.31 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.25 | Xcc-8004.2733.1 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.27 | Pf1N1B4_851 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Pseudomonas simiae WCS417 | 0.31 | PS417_20155 | | 23S rRNA methyltransferase | 0.26 | PS417_23130 | | dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.25 | PFLU_RS24785 | | outer membrane protein assembly factor BamB | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.24 | RS_RS06100 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.25 | PFLU_RS24785 | | outer membrane protein assembly factor BamB | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.25 | Psyr_1251 | | quinoprotein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.25 | Psyr_1251 | | quinoprotein | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.35 | MIT1002_02785 | | Outer membrane protein assembly factor BamB precursor | low | > 70 |
| Cupriavidus basilensis FW507-4G11 | 0.30 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.23 | RR42_RS13125 | | pyrrolo-quinoline quinone | low | > 128 |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.23 | RALBFv3_RS15290 | | outer membrane protein assembly factor BamB | — | — |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.23 | UW163_RS12755 | | outer membrane protein assembly factor BamB | — | — |
| Ralstonia sp. UNC404CL21Col | 0.30 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.23 | ABZR87_RS10930 | | outer membrane protein assembly factor BamB | low | > 80 |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.24 | ABIE51_RS09435 | | outer membrane protein assembly factor BamB | — | — |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.23 | RPSI07_RS18085 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.27 | PfGW456L13_4859 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | low | > 87 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.23 | HSERO_RS14785 | | serine/threonine protein kinase | — | — |
| Pseudomonas putida KT2440 | 0.29 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.27 | PP_0856 | | conserved lipoprotein of unknown function | low | > 96 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.21 | BPHYT_RS12565 | | pyrrolo-quinoline quinone | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.22 | QEN71_RS05990 | | outer membrane protein assembly factor BamB | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_02715 | | 23S rRNA methyltransferase | 0.28 | AO353_15905 | | outer membrane protein assembly factor BamB | low | > 101 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.29 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.22 | H281DRAFT_00519 | | Beta-barrel assembly machine subunit BamB | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.16 | GFF4860 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | — | — |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.13 | Ac3H11_1797 | | Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) | low | > 79 |
| Variovorax sp. SCN45 | 0.27 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.13 | GFF998 | | Outer membrane beta-barrel assembly protein BamB | — | — |
| Dinoroseobacter shibae DFL-12 | 0.16 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | 0.12 | Dshi_1165 | | Pyrrolo-quinoline quinone (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.14 | PGA1_c34810 | | putative RNA methyltransferase | 0.14 | PGA1_c19000 | | putative quinoprotein | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.12 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | 0.17 | Ga0059261_0309 | | FOG: WD40-like repeat | — | — |
Not shown: 25 genomes with orthologs for EX31_RS07960 only; 1 genomes with orthologs for EX31_RS20495 only