| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rahnella sp. WP5 | 1.0 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.0 | EX31_RS03480 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.63 | 15 |
| Serratia liquefaciens MT49 | 0.72 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.93 | IAI46_21325 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.66 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | HER17_RS03290 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | HGI48_RS17850 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | DDA3937_RS17925 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | DZA65_RS19000 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.92 | MPMX20_00807 | | Pyruvate dehydrogenase E1 component | low | > 85 |
| Enterobacter asburiae PDN3 | 0.61 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.92 | EX28DRAFT_3710 | | pyruvate dehydrogenase E1 component, homodimeric type | low | > 76 |
| Pantoea sp. MT58 | 0.60 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | IAI47_15810 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.55 | 51 |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | HEPCGN_08480 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 87 |
| Escherichia coli Nissle 1917 | 0.60 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | ECOLIN_RS00640 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 55 |
| Escherichia coli BW25113 | 0.60 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 0.91 | b0114 | aceE | pyruvate dehydrogenase subunit E1 (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.60 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | OHPLBJKB_03547 | | Pyruvate dehydrogenase E1 component | — | — |
| Escherichia coli ECRC98 | 0.60 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | JDDGAC_14095 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Escherichia coli ECRC99 | 0.60 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | KEDOAH_17655 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Escherichia coli ECRC101 | 0.60 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | MCAODC_01015 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Escherichia coli ECRC102 | 0.60 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | NIAGMN_08350 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Escherichia coli ECRC100 | 0.60 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | OKFHMN_10500 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | NOLOHH_02845 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 75 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.91 | BNILDI_08765 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 75 |
| Escherichia fergusonii Becca | 0.59 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.90 | EFB2_03931 | | Pyruvate dehydrogenase E1 component | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.92 | GFF122 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | low | > 78 |
| Escherichia coli BL21 | 0.59 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 0.91 | ECD_00113 | | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding | — | — |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.91 | BWI76_RS04880 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.92 | LU632_RS03080 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.74 | CSW01_12220 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Shewanella amazonensis SB2B | 0.41 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.74 | Sama_0375 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.41 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.69 | SO0424 | aceE | pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.69 | Shewana3_0426 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.40 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.69 | Shew_3431 | aceE | pyruvate dehydrogenase subunit E1 (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.36 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.64 | B158DRAFT_2144 | | pyruvate dehydrogenase E1 component, homodimeric type | low | > 40 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | 0.56 | HP15_3046 | | pyruvate dehydrogenase subunit E1 | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.57 | ABZR86_RS12410 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.34 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.60 | Psest_0448 | | pyruvate dehydrogenase E1 component, homodimeric type | — | — |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | LRK55_RS10880 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 63 |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.56 | MPMX26_02925 | | Pyruvate dehydrogenase E1 component | low | > 36 |
| Pseudomonas sp. S08-1 | 0.32 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.60 | OH686_09710 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 80 |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | LRK54_RS11175 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 59 |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.57 | ABCV34_RS04160 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | OKGIIK_12700 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 52 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_19055 | | 23S rRNA methyltransferase | 0.60 | AO356_08960 | | pyruvate dehydrogenase | — | — |
| Pseudomonas sp. RS175 | 0.31 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.60 | PFR28_05061 | | Pyruvate dehydrogenase E1 component | — | — |
| Dechlorosoma suillum PS | 0.31 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.58 | Dsui_1578 | | pyruvate dehydrogenase E1 component, homodimeric type | low | > 51 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.31 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.57 | Xcc-8004.754.1 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.60 | Pf6N2E2_3674 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | — | — |
| Pseudomonas simiae WCS417 | 0.31 | PS417_20155 | | 23S rRNA methyltransferase | 0.60 | PS417_02220 | | pyruvate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.60 | Pf1N1B4_1476 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | — | — |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.60 | PFLU_RS02275 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | RS_RS08055 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.60 | PFLU_RS02275 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.30 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.59 | RR42_RS07365 | | pyruvate dehydrogenase | low | > 128 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.66 | MIT1002_03003 | | Pyruvate dehydrogenase E1 component | low | > 70 |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.60 | Psyr_0518 | | 2-oxo-acid dehydrogenase E1 component homodimeric type | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.60 | Psyr_0518 | | 2-oxo-acid dehydrogenase E1 component homodimeric type | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | RALBFv3_RS01670 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | UW163_RS14980 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Ralstonia sp. UNC404CL21Col | 0.30 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | ABZR87_RS13470 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | RPSI07_RS15815 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.58 | ABIE51_RS18795 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.60 | PfGW456L13_214 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | — | — |
| Pseudomonas putida KT2440 | 0.29 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.60 | PP_0339 | | Pyruvate dehydrogenase E1 component | low | > 96 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.59 | HSERO_RS07305 | | pyruvate dehydrogenase | — | — |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.57 | BPHYT_RS12840 | | pyruvate dehydrogenase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.56 | QEN71_RS05725 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.29 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.57 | H281DRAFT_00466 | | pyruvate dehydrogenase E1 component | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_02715 | | 23S rRNA methyltransferase | 0.60 | AO353_12865 | | pyruvate dehydrogenase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.60 | GFF4890 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.61 | Ac3H11_4093 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | low | > 79 |
| Variovorax sp. SCN45 | 0.27 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.60 | GFF967 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | low | > 127 |
| Dinoroseobacter shibae DFL-12 | 0.16 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | 0.60 | Dshi_1968 | | 2-oxo-acid dehydrogenase E1 subunit, homodimeric type (RefSeq) | low | > 64 |
| Bosea sp. OAE506 | 0.15 | ABIE41_RS22255 | | RNA methyltransferase | 0.07 | ABIE41_RS08425 | | transketolase | low | > 77 |
| Caulobacter crescentus NA1000 | 0.14 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.07 | CCNA_01263 | | pyruvate dehydrogenase E1 component | 0.57 | 54 |
| Caulobacter crescentus NA1000 Δfur | 0.14 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.07 | CCNA_01263 | | pyruvate dehydrogenase E1 component | low | > 67 |
| Phaeobacter inhibens DSM 17395 | 0.14 | PGA1_c34810 | | putative RNA methyltransferase | 0.08 | PGA1_c16590 | | transketolase-like protein | low | > 62 |
Not shown: 23 genomes with orthologs for EX31_RS07960 only; 2 genomes with orthologs for EX31_RS03480 only