| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_03753 | | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein | 1.0 | ECD_03841 | | phosphoenolpyruvate carboxylase | 0.34 | 60 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_05290 | glnG | nitrogen regulation protein NR(I) | 1.00 | BNILDI_05785 | ppc | phosphoenolpyruvate carboxylase | low | > 75 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_14110 | glnG | nitrogen regulation protein NR(I) | 1.00 | OKFHMN_13595 | ppc | phosphoenolpyruvate carboxylase | low | > 80 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_14040 | glnG | nitrogen regulation protein NR(I) | 1.00 | KEDOAH_14565 | ppc | phosphoenolpyruvate carboxylase | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_11865 | glnG | nitrogen regulation protein NR(I) | 1.00 | NIAGMN_11345 | ppc | phosphoenolpyruvate carboxylase | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_17735 | glnG | nitrogen regulation protein NR(I) | 1.00 | JDDGAC_17220 | ppc | phosphoenolpyruvate carboxylase | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_06240 | glnG | nitrogen regulation protein NR(I) | 1.00 | NOLOHH_05740 | ppc | phosphoenolpyruvate carboxylase | low | > 75 |
| Escherichia coli BW25113 | 1.00 | b3868 | glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | 1.00 | b3956 | ppc | phosphoenolpyruvate carboxylase (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_04610 | glnG | nitrogen regulation protein NR(I) | 1.00 | MCAODC_04095 | ppc | phosphoenolpyruvate carboxylase | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_04184 | | DNA-binding transcriptional regulator NtrC | 1.00 | OHPLBJKB_04094 | | Phosphoenolpyruvate carboxylase | low | > 73 |
| Escherichia coli ECOR38 | 0.99 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | 1.00 | HEPCGN_12240 | ppc | phosphoenolpyruvate carboxylase | low | > 87 |
| Escherichia fergusonii Becca | 0.99 | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | 1.00 | EFB2_04658 | | Phosphoenolpyruvate carboxylase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS22295 | | nitrogen regulation protein NR(I) | 1.00 | ECOLIN_RS22835 | | phosphoenolpyruvate carboxylase | low | > 55 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.97 | GFF2220 | | Nitrogen regulation protein NR(I) | 0.94 | GFF2342 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.94 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | 0.92 | MPMX20_04524 | | Phosphoenolpyruvate carboxylase | 0.61 | 34 |
| Enterobacter asburiae PDN3 | 0.94 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | 0.92 | EX28DRAFT_4418 | | Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) | low | > 76 |
| Klebsiella michiganensis M5al | 0.94 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.90 | BWI76_RS00835 | | phosphoenolpyruvate carboxylase | 0.40 | 82 |
| Pantoea sp. MT58 | 0.94 | IAI47_00450 | | nitrogen regulation protein NR(I) | 0.83 | IAI47_00895 | | phosphoenolpyruvate carboxylase | 0.82 | 16 |
| Erwinia tracheiphila SCR3 | 0.92 | LU632_RS22135 | glnG | nitrogen regulation protein NR(I) | 0.82 | LU632_RS19625 | ppc | phosphoenolpyruvate carboxylase | low | > 74 |
| Rahnella sp. WP5 | 0.92 | EX31_RS15880 | | nitrogen regulation protein NR(I) | 0.82 | EX31_RS14200 | | phosphoenolpyruvate carboxylase | 0.87 | 2 |
| Serratia liquefaciens MT49 | 0.92 | IAI46_24960 | | nitrogen regulation protein NR(I) | 0.83 | IAI46_24525 | | phosphoenolpyruvate carboxylase | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.92 | HER17_RS21440 | | nitrogen regulation protein NR(I) | 0.83 | HER17_RS20655 | | phosphoenolpyruvate carboxylase | low | > 75 |
| Dickeya dadantii 3937 | 0.92 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | 0.82 | DDA3937_RS20360 | | phosphoenolpyruvate carboxylase | 0.78 | 19 |
| Dickeya dianthicola ME23 | 0.91 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | 0.81 | DZA65_RS00895 | | phosphoenolpyruvate carboxylase | 0.74 | 21 |
| Dickeya dianthicola 67-19 | 0.91 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | 0.82 | HGI48_RS00850 | | phosphoenolpyruvate carboxylase | 0.85 | 3 |
| Vibrio cholerae E7946 ATCC 55056 | 0.72 | CSW01_13865 | | nitrogen regulation protein NR(I) | 0.63 | CSW01_13390 | | phosphoenolpyruvate carboxylase | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.71 | MIT1002_03186 | | Nitrogen regulation protein NR(I) | 0.51 | MIT1002_03491 | | Phosphoenolpyruvate carboxylase | low | > 70 |
| Shewanella oneidensis MR-1 | 0.70 | SO4472 | ntrC | nitrogen regulation protein NR(I) (NCBI ptt file) | 0.55 | SO0274 | ppc | phosphoenolpyruvate carboxylase (NCBI ptt file) | 0.83 | 4 |
| Shewanella sp. ANA-3 | 0.70 | Shewana3_0258 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | 0.55 | Shewana3_3906 | | phosphoenolpyruvate carboxylase (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.70 | Sama_3427 | | response regulator receiver protein (RefSeq) | 0.54 | Sama_0254 | | phosphoenolpyruvate carboxylase (RefSeq) | 0.57 | 23 |
| Shewanella loihica PV-4 | 0.69 | Shew_3561 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | 0.53 | Shew_0200 | | phosphoenolpyruvate carboxylase (RefSeq) | low | > 60 |
| Pseudomonas simiae WCS417 | 0.68 | PS417_01635 | | nitrogen regulation protein NR(I) | 0.52 | PS417_06060 | | phosphoenolpyruvate carboxylase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | 0.51 | Pf6N2E2_3103 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.68 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.51 | PFLU_RS06130 | | phosphoenolpyruvate carboxylase | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.68 | AO356_09730 | | nitrogen regulation protein NR(I) | 0.51 | AO356_06185 | | phosphoenolpyruvate carboxylase | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.68 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.51 | PFLU_RS06130 | | phosphoenolpyruvate carboxylase | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.68 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | 0.51 | Psyr_1318 | | Phosphoenolpyruvate carboxylase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.68 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | 0.51 | Psyr_1318 | | Phosphoenolpyruvate carboxylase | — | — |
| Pseudomonas sp. RS175 | 0.68 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | 0.52 | PFR28_00368 | | Phosphoenolpyruvate carboxylase | low | > 88 |
| Pseudomonas sp. S08-1 | 0.68 | OH686_10640 | | nitrogen regulation protein NR(I) | 0.52 | OH686_06795 | | Phosphoenolpyruvate carboxylase | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.68 | AO353_12145 | | nitrogen regulation protein NR(I) | 0.51 | AO353_16310 | | phosphoenolpyruvate carboxylase | low | > 101 |
| Pseudomonas putida KT2440 | 0.68 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | 0.50 | PP_1505 | | Phosphoenolpyruvate carboxylase | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | 0.51 | PfGW456L13_4740 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.67 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | 0.51 | Pf1N1B4_3051 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.66 | Psest_3932 | | nitrogen regulation protein NR(I) | 0.50 | Psest_1557 | | Phosphoenolpyruvate carboxylase | low | > 67 |
| Marinobacter adhaerens HP15 | 0.65 | HP15_425 | | two-component response regulator NtrC | 0.52 | HP15_795 | | phosphoenolpyruvate carboxylase | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.65 | MPMX26_01292 | | DNA-binding transcriptional regulator NtrC | 0.48 | MPMX26_03013 | | Phosphoenolpyruvate carboxylase | 0.63 | 11 |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | 0.25 | RPSI07_RS13100 | | phosphoenolpyruvate carboxylase | low | > 81 |
| Herbaspirillum seropedicae SmR1 | 0.58 | HSERO_RS15680 | | chemotaxis protein CheY | 0.24 | HSERO_RS14670 | | phosphoenolpyruvate carboxylase | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.58 | RR42_RS12980 | | chemotaxis protein CheY | 0.24 | RR42_RS15905 | | phosphoenolpyruvate carboxylase | 0.60 | 10 |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS06320 | | nitrogen regulation protein NR(I) | 0.25 | RS_RS11840 | | phosphoenolpyruvate carboxylase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | 0.25 | RALBFv3_RS04250 | | phosphoenolpyruvate carboxylase | — | — |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS13000 | | nitrogen regulation protein NR(I) | 0.25 | UW163_RS09420 | | phosphoenolpyruvate carboxylase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.57 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | 0.25 | ABZR87_RS16140 | | phosphoenolpyruvate carboxylase | 0.35 | 54 |
| Dechlorosoma suillum PS | 0.56 | Dsui_1051 | | nitrogen regulation protein NR(I) | 0.25 | Dsui_1603 | | phosphoenolpyruvate carboxylase | — | — |
| Variovorax sp. SCN45 | 0.56 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | 0.21 | GFF3838 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | — | — |
| Variovorax sp. OAS795 | 0.55 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | 0.21 | ABID97_RS08220 | | phosphoenolpyruvate carboxylase | 0.44 | 18 |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | 0.22 | QEN71_RS24955 | | phosphoenolpyruvate carboxylase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | 0.23 | H281DRAFT_00197 | | Phosphoenolpyruvate carboxylase, type 1 | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.55 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | 0.22 | ABIE53_001314 | | phosphoenolpyruvate carboxylase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS12935 | | chemotaxis protein CheY | 0.22 | BPHYT_RS05225 | | phosphoenolpyruvate carboxylase | 0.48 | 56 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.54 | GFF5269 | | Nitrogen regulation protein NR(I) | 0.23 | GFF115 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_4432 | | Nitrogen regulation protein NR(I) | 0.24 | Ac3H11_3553 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | 0.47 | 36 |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS03540 | | nitrogen regulation protein NR(I) | 0.22 | ABCV34_RS14805 | | phosphoenolpyruvate carboxylase | low | > 48 |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS01360 | | nitrogen regulation protein NR(I) | 0.23 | ABIE51_RS18965 | | phosphoenolpyruvate carboxylase | 0.76 | 28 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.48 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | 0.23 | Xcc-8004.4314.1 | | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | 0.23 | LRK55_RS11810 | | phosphoenolpyruvate carboxylase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.47 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | 0.23 | LRK54_RS12075 | | phosphoenolpyruvate carboxylase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | 0.23 | OKGIIK_11820 | ppc | phosphoenolpyruvate carboxylase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | 0.22 | ABZR86_RS11555 | | phosphoenolpyruvate carboxylase | 0.73 | 18 |
| Rhodopseudomonas palustris CGA009 | 0.41 | TX73_013420 | | nitrogen regulation protein NR(I) | 0.26 | TX73_009115 | | phosphoenolpyruvate carboxylase | low | > 86 |
| Azospirillum sp. SherDot2 | 0.41 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | 0.25 | MPMX19_06050 | | Phosphoenolpyruvate carboxylase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.38 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | 0.22 | Ga0059261_2719 | | Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) | 0.66 | 8 |
Not shown: 8 genomes with orthologs for ECD_03753 only; 9 genomes with orthologs for ECD_03841 only