| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 1.0 | ECD_03106 | | ribonuclease G | 0.65 | 11 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 1.00 | OKFHMN_17745 | rng | ribonuclease G | low | > 80 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 1.00 | KEDOAH_10405 | rng | ribonuclease G | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 1.00 | NIAGMN_15505 | rng | ribonuclease G | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_02430 | pmbA | metalloprotease PmbA | 1.00 | MCAODC_08265 | rng | ribonuclease G | low | > 87 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 1.00 | JDDGAC_21370 | rng | ribonuclease G | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_03800 | | Metalloprotease PmbA | 1.00 | OHPLBJKB_00458 | | Ribonuclease G | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 1.00 | b3247 | cafA | bundles of cytoplasmic filaments (VIMSS) | low | > 76 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 1.00 | NOLOHH_09530 | rng | ribonuclease G | low | > 75 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 1.00 | HEPCGN_16610 | rng | ribonuclease G | low | > 87 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_07325 | pmbA | metalloprotease PmbA | 1.00 | BNILDI_01990 | rng | ribonuclease G | low | > 75 |
| Escherichia fergusonii Becca | 0.99 | EFB2_04298 | | Metalloprotease PmbA | 1.00 | EFB2_00584 | | Ribonuclease G | low | > 86 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS24570 | | metalloprotease PmbA | 1.00 | ECOLIN_RS18605 | | ribonuclease G | low | > 55 |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_00517 | | Metalloprotease PmbA | 0.94 | MPMX20_04153 | | Ribonuclease G | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.96 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.95 | GFF2138 | | Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.96 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.94 | EX28DRAFT_3297 | | ribonuclease, Rne/Rng family | low | > 76 |
| Klebsiella michiganensis M5al | 0.94 | BWI76_RS02850 | | metalloprotease PmbA | 0.95 | BWI76_RS25480 | | ribonuclease E/G | low | > 92 |
| Serratia liquefaciens MT49 | 0.86 | IAI46_22575 | | metalloprotease PmbA | 0.89 | IAI46_22700 | | ribonuclease G | low | > 86 |
| Rahnella sp. WP5 | 0.85 | EX31_RS12320 | | metalloprotease PmbA | 0.88 | EX31_RS12255 | | ribonuclease G | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.84 | HER17_RS20090 | | metalloprotease PmbA | 0.90 | HER17_RS20150 | | ribonuclease G | low | > 75 |
| Pantoea sp. MT58 | 0.84 | IAI47_02765 | | metalloprotease PmbA | 0.86 | IAI47_02455 | | ribonuclease G | low | > 76 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS01500 | | metalloprotease PmbA | 0.90 | DDA3937_RS01450 | | ribonuclease G | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.81 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.88 | LU632_RS21430 | rng | ribonuclease G | low | > 74 |
| Dickeya dianthicola 67-19 | 0.81 | HGI48_RS01415 | | metalloprotease PmbA | 0.90 | HGI48_RS01370 | | ribonuclease G | low | > 71 |
| Dickeya dianthicola ME23 | 0.81 | DZA65_RS01480 | | metalloprotease PmbA | 0.90 | DZA65_RS01430 | | ribonuclease G | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_12845 | | metalloprotease PmbA | 0.80 | CSW01_02205 | | ribonuclease E/G | low | > 62 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.72 | Shewana3_3644 | | ribonuclease G (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.59 | Sama_0482 | | PmbA protein (RefSeq) | 0.71 | Sama_0471 | | ribonuclease G (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.59 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.72 | SO4094 | cafA | ribonuclease G (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.57 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.72 | Shew_0407 | | ribonuclease G (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_00230 | | peptidase PmbA | 0.73 | MIT1002_00224 | | Ribonuclease G | low | > 70 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_00163 | | Metalloprotease PmbA | 0.55 | PFR28_00158 | | Ribonuclease G | 0.27 | 41 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | 0.56 | PFLU_RS04325 | | ribonuclease G | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.56 | AO356_07110 | | ribonuclease G | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | 0.56 | PFLU_RS04325 | | ribonuclease G | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.55 | Pf6N2E2_3283 | | Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) | 0.28 | 60 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.56 | PS417_04270 | | ribonuclease G | low | > 88 |
| Pseudomonas putida KT2440 | 0.47 | PP_0942 | | regulatory protease | 0.55 | PP_0937 | | endoribonuclease G (RNAse G) | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | Pf1N1B4_1095 | | Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_05205 | | peptidase PmbA | 0.55 | AO353_05230 | | ribonuclease G | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.55 | PfGW456L13_5029 | | Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.55 | Psyr_4159 | | RNAse G | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.55 | Psyr_4159 | | RNAse G | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS09265 | | peptidase C69 | 0.53 | HSERO_RS17790 | | ribonuclease | — | — |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.56 | Psest_3323 | | ribonuclease, Rne/Rng family | low | > 67 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.53 | Xcc-8004.1880.1 | | Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) | low | > 74 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS20695 | | metalloprotease PmbA | 0.52 | ABID97_RS16705 | | ribonuclease G | low | > 91 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.50 | ABZR86_RS21730 | | ribonuclease G | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.52 | OKGIIK_10290 | rng | ribonuclease G | low | > 52 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | OH686_08595 | | Ribonuclease G | low | > 80 |
| Variovorax sp. SCN45 | 0.45 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.52 | GFF295 | | Ribonuclease G | low | > 127 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.50 | LRK55_RS03155 | | ribonuclease G | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.50 | LRK54_RS03405 | | ribonuclease G | low | > 59 |
| Dechlorosoma suillum PS | 0.44 | Dsui_1234 | | putative Zn-dependent protease-like protein | 0.56 | Dsui_0434 | | ribonuclease, Rne/Rng family | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.49 | Ac3H11_2416 | | Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) | low | > 79 |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.50 | RALBFv3_RS03575 | | ribonuclease G | — | — |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS15845 | | metalloprotease PmbA | 0.50 | UW163_RS10095 | | ribonuclease G | — | — |
| Ralstonia sp. UNC404CL21Col | 0.43 | ABZR87_RS09660 | | metalloprotease PmbA | 0.51 | ABZR87_RS15440 | | ribonuclease G | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.43 | ABIE53_003116 | | PmbA protein | 0.57 | ABIE53_001538 | | ribonuclease G | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS19505 | | metalloprotease PmbA | 0.50 | RPSI07_RS13650 | | ribonuclease G | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.43 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.57 | H281DRAFT_04515 | | RNAse G | low | > 103 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.57 | B158DRAFT_2069 | | ribonuclease, Rne/Rng family | low | > 40 |
| Paraburkholderia sabiae LMG 24235 | 0.43 | QEN71_RS04270 | | metalloprotease PmbA | 0.57 | QEN71_RS24430 | | ribonuclease G | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14705 | | peptidase C69 | 0.57 | BPHYT_RS06375 | | ribonuclease | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS10610 | | metalloprotease PmbA | 0.51 | ABCV34_RS02480 | | ribonuclease G | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.50 | GFF4531 | | Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) | low | > 90 |
| Lysobacter sp. OAE881 | 0.41 | ABIE51_RS06805 | | metalloprotease PmbA | 0.53 | ABIE51_RS06785 | | ribonuclease G | low | > 62 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS04700 | | metalloprotease PmbA | 0.50 | RS_RS11025 | | ribonuclease G | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS14750 | | peptidase PMbA | 0.51 | RR42_RS04700 | | ribonuclease G | low | > 128 |
| Azospirillum brasilense Sp245 | 0.34 | AZOBR_RS11930 | | modulator protein | 0.22 | AZOBR_RS19540 | | ribonuclease E | — | — |
| Parabacteroides merdae CL09T00C40 | 0.16 | HMPREF1078_RS03625 | | TldD/PmbA family protein | 0.27 | HMPREF1078_RS14165 | | Rne/Rng family ribonuclease | low | > 61 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.06 | CA265_RS02445 | | peptidase C69 | 0.28 | CA265_RS22665 | | ribonuclease E/G | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.06 | CA264_16645 | | peptidase C69 | 0.28 | CA264_14980 | | ribonuclease E/G | — | — |
Not shown: 16 genomes with orthologs for ECD_04103 only; 7 genomes with orthologs for ECD_03106 only