| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 1.0 | ECD_02255 | | N5-glutamine methyltransferase | 0.74 | 12 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | HEPCGN_21815 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 0.99 | OHPLBJKB_01375 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 0.99 | b2330 | yfcB | putative adenine-specific methylase (VIMSS) | low | > 76 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | EFB2_01528 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 86 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.99 | KEDOAH_05585 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.99 | NIAGMN_20385 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | NOLOHH_14245 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 75 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.99 | OKFHMN_22610 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 80 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | ECOLIN_RS13495 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 55 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.99 | JDDGAC_26570 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 86 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.99 | MCAODC_13650 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 87 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | BNILDI_13165 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.93 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.95 | GFF1951 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 78 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.93 | EX28DRAFT_0274 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 76 |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.93 | MPMX20_03265 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 85 |
| Klebsiella michiganensis M5al | 0.86 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.91 | BWI76_RS20440 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 92 |
| Rahnella sp. WP5 | 0.85 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.84 | EX31_RS19690 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 89 |
| Serratia liquefaciens MT49 | 0.83 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.84 | IAI46_18030 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 86 |
| Pantoea sp. MT58 | 0.82 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.86 | IAI47_06145 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 76 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.84 | DDA3937_RS14585 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.79 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.83 | HGI48_RS14535 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 71 |
| Dickeya dianthicola ME23 | 0.79 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.83 | DZA65_RS15470 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.79 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.85 | LU632_RS07770 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.81 | HER17_RS06930 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 75 |
| Shewanella sp. ANA-3 | 0.68 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.66 | Shewana3_1468 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.76 | CSW01_10570 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 62 |
| Shewanella oneidensis MR-1 | 0.68 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | 0.63 | SO3080 | | hemK family protein (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.66 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.67 | Sama_2160 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.65 | Shew_3224 | | hypothetical protein (RefSeq) | 0.67 | Shew_2417 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | 0.53 | HP15_1839 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | 0.57 | MIT1002_01228 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | 0.51 | B158DRAFT_1297 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase (EC 2.1.1.-) | low | > 40 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_08050 | | 16S rRNA methyltransferase | 0.53 | AO353_02265 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 101 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.53 | PFLU_RS21295 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 109 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | 0.53 | PFR28_03129 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.53 | PFLU_RS21295 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.30 | 8 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.54 | Pf6N2E2_5819 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_13565 | | 16S rRNA methyltransferase | 0.54 | AO356_19525 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 104 |
| Pseudomonas putida KT2440 | 0.41 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.52 | PP_1827 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.53 | PfGW456L13_4168 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 87 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_26545 | | 16S rRNA methyltransferase | 0.52 | PS417_19330 | | SAM-dependent methyltransferase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.53 | Pf1N1B4_3777 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.53 | Psyr_1850 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.53 | Psest_1995 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | low | > 67 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.53 | Psyr_1850 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | low | > 86 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.55 | OH686_00665 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.60 | 67 |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.45 | ABZR86_RS08050 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.43 | Xcc-8004.1953.1 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.44 | LRK54_RS01735 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.44 | LRK55_RS01515 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 63 |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.47 | MPMX26_01339 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 36 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | ABIE51_RS08215 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 62 |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | RALBFv3_RS00290 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | UW163_RS13620 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | — | — |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.39 | BPHYT_RS12205 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | 0.40 | 41 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | RPSI07_RS17185 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.37 | RR42_RS11955 | | SAM-dependent methyltransferase | low | > 128 |
| Dechlorosoma suillum PS | 0.33 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.43 | Dsui_2712 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | — | — |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.44 | OKGIIK_04795 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 52 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.39 | H281DRAFT_00596 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | low | > 103 |
| Ralstonia solanacearum GMI1000 | 0.33 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | RS_RS06960 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | ABZR87_RS11740 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.43 | QEN71_RS06350 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.34 | Ac3H11_2299 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 79 |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.42 | ABIE53_002520 | | ribosomal protein L3 glutamine methyltransferase | low | > 113 |
| Variovorax sp. SCN45 | 0.30 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.33 | GFF258 | | Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298) | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.42 | HSERO_RS10785 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.32 | GFF4549 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.27 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.43 | ABCV34_RS05175 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 48 |
| Azospirillum sp. SherDot2 | 0.18 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | 0.42 | MPMX19_00751 | | 50S ribosomal protein L3 glutamine methyltransferase | low | > 112 |
| Rhodopseudomonas palustris CGA009 | 0.17 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | TX73_005990 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | low | > 86 |
| Azospirillum brasilense Sp245 | 0.15 | AZOBR_RS11890 | | 16S rRNA methyltransferase | 0.43 | AZOBR_RS10950 | | SAM-dependent methyltransferase | low | > 97 |
Not shown: 27 genomes with orthologs for ECD_02776 only; 1 genomes with orthologs for ECD_02255 only