Conservation of cofitness between ECD_02735 and ECD_00971 in Escherichia coli BL21

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex 1.0 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 0.45 18
Escherichia coli ECRC62 1.00 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase 0.98 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 75
Escherichia coli BW25113 1.00 b2903 gcvP glycine dehydrogenase (NCBI) 1.00 b0967 yccW predicted methyltransferase (RefSeq) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) 0.99 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I low > 73
Escherichia coli ECRC102 1.00 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase 0.98 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC100 1.00 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase 0.98 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 80
Escherichia coli ECRC101 1.00 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase 0.98 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 87
Escherichia coli ECRC99 1.00 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase 0.98 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC98 1.00 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase 0.98 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase 1.00 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECOR38 0.99 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase 0.99 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 87
Escherichia fergusonii Becca 0.99 EFB2_00999 Glycine dehydrogenase (decarboxylating) 0.98 EFB2_03104 Ribosomal RNA large subunit methyltransferase I low > 86
Escherichia coli ECOR27 0.99 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase 0.99 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.94 GFF3258 LSU m5C1962 methyltransferase RlmI low > 78
Enterobacter sp. TBS_079 0.89 MPMX20_03762 Glycine dehydrogenase (decarboxylating) 0.94 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.90 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase low > 92
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) 0.95 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases low > 76
Pantoea sp. MT58 0.82 IAI47_03775 aminomethyl-transferring glycine dehydrogenase 0.87 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 76
Serratia liquefaciens MT49 0.81 IAI46_20850 aminomethyl-transferring glycine dehydrogenase 0.85 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 86
Erwinia tracheiphila SCR3 0.81 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase 0.83 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 74
Rahnella sp. WP5 0.81 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase 0.82 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 89
Shewanella amazonensis SB2B 0.68 Sama_2719 glycine dehydrogenase (RefSeq) 0.61 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.68 MIT1002_02971 Glycine dehydrogenase [decarboxylating] 0.56 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I low > 70
Shewanella sp. ANA-3 0.67 Shewana3_3499 glycine dehydrogenase (RefSeq) 0.60 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.67 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) 0.59 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) low > 76
Pseudomonas sp. S08-1 0.63 OH686_11165 glycine dehydrogenase 0.26 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.26 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI low > 87
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_08720 glycine dehydrogenase 0.26 AO353_08330 SAM-dependent methyltransferase low > 101
Pseudomonas stutzeri RCH2 0.62 Psest_0183 glycine dehydrogenase (decarboxylating) 0.26 Psest_0236 Predicted SAM-dependent methyltransferases low > 67
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.26 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI low > 87
Pseudomonas putida KT2440 0.61 PP_5192 glycine dehydrogenase 0.26 PP_5127 ribosomal RNA large subunit methyltransferase I low > 96
Dechlorosoma suillum PS 0.61 Dsui_2737 glycine dehydrogenase, decarboxylating 0.48 Dsui_0653 putative SAM-dependent methyltransferase 0.88 36
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.64 CSW01_06820 ribosomal RNA large subunit methyltransferase I low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.26 Psyr_4764 SAM-dependent methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.26 Psyr_4764 SAM-dependent methyltransferase low > 86
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase 0.30 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase low > 74
Rhodanobacter denitrificans MT42 0.56 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase 0.29 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase low > 63
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.26 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI low > 103
Pseudomonas sp. RS175 0.56 PFR28_03383 Glycine dehydrogenase (decarboxylating) 0.26 PFR28_04274 Ribosomal RNA large subunit methyltransferase I low > 88
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_18170 glycine dehydrogenase 0.26 AO356_13260 SAM-dependent methyltransferase low > 104
Pseudomonas fluorescens SBW25 0.56 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.26 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.26 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_02409 glycine dehydrogenase 0.45 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase low > 103
Pseudomonas simiae WCS417 0.56 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.26 PS417_26880 SAM-dependent methyltransferase low > 88
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) 0.45 BPHYT_RS01650 23S rRNA methyltransferase low > 109
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase 0.29 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase low > 59
Paraburkholderia graminis OAS925 0.55 ABIE53_000238 glycine dehydrogenase 0.45 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase 0.46 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase low > 153
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS20070 glycine dehydrogenase 0.43 RR42_RS01670 23S rRNA methyltransferase low > 128
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 0.26 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase low > 52
Lysobacter sp. OAE881 0.55 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase 0.31 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase low > 62
Ralstonia solanacearum UW163 0.55 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring) 0.47 UW163_RS03910 class I SAM-dependent rRNA methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring) 0.47 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase 0.74 66
Ralstonia solanacearum PSI07 0.55 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring) 0.48 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase low > 81
Ralstonia solanacearum GMI1000 0.54 RS_RS16510 glycine dehydrogenase 0.47 RS_RS00255 class I SAM-dependent rRNA methyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase 0.48 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.3878.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.31 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI low > 74
Variovorax sp. OAS795 0.54 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase 0.39 ABID97_RS06155 class I SAM-dependent methyltransferase low > 91
Variovorax sp. SCN45 0.54 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.40 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) low > 127
Mucilaginibacter yixingensis YX-36 DSM 26809 0.53 ABZR88_RS01785 aminomethyl-transferring glycine dehydrogenase 0.43 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase low > 71
Phaeobacter inhibens DSM 17395 0.53 PGA1_78p00310 glycine dehydrogenase 0.20 PGA1_c19990 ribosomal RNA large subunit methyltransferase I — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_2680 glycine dehydrogenase (RefSeq) 0.20 Dshi_1771 hypothetical protein (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.52 Ac3H11_167 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.40 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_18410 glycine dehydrogenase (aminomethyl-transferring) 0.33 CA264_05605 RlmI/RlmK family 23S rRNA methyltransferase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_0744 glycine dehydrogenase (decarboxylating) 0.32 Echvi_3350 Predicted SAM-dependent methyltransferases low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS25185 glycine dehydrogenase (aminomethyl-transferring) 0.43 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase low > 88
Bacteroides ovatus ATCC 8483 0.48 BACOVA_04038 glycine dehydrogenase 0.32 BACOVA_05134 hypothetical protein low > 94
Parabacteroides merdae CL09T00C40 0.47 HMPREF1078_RS15115 aminomethyl-transferring glycine dehydrogenase 0.33 HMPREF1078_RS13685 class I SAM-dependent rRNA methyltransferase 0.72 8
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS16815 aminomethyl-transferring glycine dehydrogenase 0.30 HMPREF1181_RS05925 class I SAM-dependent rRNA methyltransferase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.47 BT1147 glycine dehydrogenase [decarboxylating] (NCBI ptt file) 0.31 BT4331 conserved hypothetical protein (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS15100 aminomethyl-transferring glycine dehydrogenase 0.32 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase low > 72
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS18780 aminomethyl-transferring glycine dehydrogenase 0.30 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase low > 67

Not shown: 14 genomes with orthologs for ECD_02735 only; 10 genomes with orthologs for ECD_00971 only