| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00065 | | DNA replication and repair protein RecF | 1.0 | CSW01_12845 | | metalloprotease PmbA | 0.64 | 20 |
| Erwinia amylovora T8 | 0.57 | OLJFJH_05150 | | DNA replication/repair protein RecF | 0.63 | OLJFJH_02355 | | metalloprotease PmbA | low | > 58 |
| Pantoea sp. MT58 | 0.56 | IAI47_00015 | | DNA replication/repair protein RecF | 0.62 | IAI47_02765 | | metalloprotease PmbA | low | > 76 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_00015 | | DNA replication/repair protein RecF | 0.65 | IAI46_22575 | | metalloprotease PmbA | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS00015 | recF | DNA replication/repair protein RecF | 0.59 | LU632_RS02145 | pmbA | metalloprotease PmbA | low | > 74 |
| Rahnella sp. WP5 | 0.55 | EX31_RS05975 | | DNA replication/repair protein RecF | 0.64 | EX31_RS12320 | | metalloprotease PmbA | low | > 89 |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_07165 | recF | DNA replication/repair protein RecF | 0.64 | NOLOHH_04185 | pmbA | metalloprotease PmbA | low | > 75 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_18645 | recF | DNA replication/repair protein RecF | 0.64 | JDDGAC_15565 | pmbA | metalloprotease PmbA | low | > 86 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_05535 | recF | DNA replication/repair protein RecF | 0.64 | MCAODC_02430 | pmbA | metalloprotease PmbA | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_00003 | | DNA replication and repair protein RecF | 0.64 | OHPLBJKB_03800 | | Metalloprotease PmbA | low | > 73 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS21285 | | DNA replication/repair protein RecF | 0.62 | DDA3937_RS01500 | | metalloprotease PmbA | low | > 74 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_04365 | recF | DNA replication/repair protein RecF | 0.64 | BNILDI_07325 | pmbA | metalloprotease PmbA | low | > 75 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS21310 | | DNA replication/repair protein RecF | 0.64 | ECOLIN_RS24570 | | metalloprotease PmbA | low | > 55 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS00015 | | DNA replication/repair protein RecF | 0.66 | HER17_RS20090 | | metalloprotease PmbA | low | > 75 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_13125 | recF | DNA replication/repair protein RecF | 0.64 | KEDOAH_16230 | pmbA | metalloprotease PmbA | — | — |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_15025 | recF | DNA replication/repair protein RecF | 0.64 | OKFHMN_11925 | pmbA | metalloprotease PmbA | low | > 80 |
| Escherichia fergusonii Becca | 0.55 | EFB2_00003 | | DNA replication and repair protein RecF | 0.64 | EFB2_04298 | | Metalloprotease PmbA | low | > 86 |
| Escherichia coli BL21 | 0.55 | ECD_03583 | | gap repair protein | 0.64 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | low | > 61 |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_13720 | recF | DNA replication/repair protein RecF | 0.64 | HEPCGN_10125 | pmbA | metalloprotease PmbA | low | > 87 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_12780 | recF | DNA replication/repair protein RecF | 0.64 | NIAGMN_09775 | pmbA | metalloprotease PmbA | — | — |
| Escherichia coli BW25113 | 0.55 | b3700 | recF | recombination protein F (NCBI) | 0.64 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | low | > 76 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS00015 | | DNA replication/repair protein RecF | 0.62 | HGI48_RS01415 | | metalloprotease PmbA | low | > 71 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS00015 | | DNA replication/repair protein RecF | 0.62 | DZA65_RS01480 | | metalloprotease PmbA | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF1756 | | DNA recombination and repair protein RecF | 0.64 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 78 |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS00010 | | DNA replication and repair protein RecF | 0.64 | BWI76_RS02850 | | metalloprotease PmbA | 0.21 | 59 |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_00003 | | DNA replication and repair protein RecF | 0.64 | MPMX20_00517 | | Metalloprotease PmbA | low | > 85 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_3987 | | DNA replication and repair protein RecF | 0.64 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 76 |
| Shewanella loihica PV-4 | 0.46 | Shew_0003 | | DNA replication and repair protein RecF (RefSeq) | 0.56 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.45 | SO0010 | recF | DNA replication and repair protein RecF (NCBI ptt file) | 0.58 | SO4078 | pmbA | pmba protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.45 | Shewana3_0011 | recF | recombination protein F (RefSeq) | 0.58 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.44 | Sama_0015 | recF | recombination protein F (RefSeq) | 0.58 | Sama_0482 | | PmbA protein (RefSeq) | low | > 62 |
| Pseudomonas aeruginosa PA14 | 0.38 | IKLFDK_25545 | | DNA replication/repair protein RecF | 0.47 | IKLFDK_01720 | | metalloprotease PmbA | low | > 101 |
| Pseudomonas sp. S08-1 | 0.38 | OH686_12620 | | DNA recombination and repair protein RecF | 0.47 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_0004 | | recF protein | 0.46 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.38 | Pf1N1B4_1927 | | DNA recombination and repair protein RecF | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.31 | 78 |
| Pseudomonas sp. DMC3 | 0.38 | GFF578 | | DNA replication and repair protein RecF | 0.47 | GFF1818 | | Metalloprotease PmbA | low | > 89 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.38 | Psyr_0003 | | DNA replication and repair protein RecF | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas sp. BP01 | 0.38 | JOY50_RS08340 | recF | DNA replication/repair protein RecF | 0.48 | JOY50_RS11080 | pmbA | metalloprotease PmbA | low | > 84 |
| Pseudomonas syringae pv. syringae B728a | 0.38 | Psyr_0003 | | DNA replication and repair protein RecF | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas sp. RS175 | 0.38 | PFR28_04593 | | DNA replication and repair protein RecF | 0.48 | PFR28_00163 | | Metalloprotease PmbA | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.37 | PFLU_RS00015 | | DNA replication/repair protein RecF | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.37 | AO353_10480 | | recombinase RecF | 0.47 | AO353_05205 | | peptidase PmbA | 0.49 | 11 |
| Pseudomonas fluorescens SBW25-INTG | 0.37 | PFLU_RS00015 | | DNA replication/repair protein RecF | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.37 | AO356_11635 | | recombinase RecF | 0.48 | AO356_07085 | | peptidase PmbA | low | > 104 |
| Pseudomonas sp. SVBP6 | 0.37 | COO64_RS02120 | recF | DNA replication/repair protein RecF | 0.47 | COO64_RS04235 | pmbA | metalloprotease PmbA | low | > 93 |
| Pseudomonas putida KT2440 | 0.37 | PP_0012 | | DNA replication and repair protein | 0.49 | PP_0942 | | regulatory protease | low | > 96 |
| Pseudomonas simiae WCS417 | 0.37 | PS417_00015 | | recombinase RecF | 0.47 | PS417_04295 | | peptidase PmbA | 0.27 | 49 |
| Pseudomonas fluorescens GW456-L13 | 0.37 | PfGW456L13_664 | | DNA recombination and repair protein RecF | 0.47 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_4197 | | DNA recombination and repair protein RecF | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 103 |
| Alteromonas macleodii MIT1002 | 0.35 | MIT1002_00003 | | DNA replication and repair protein RecF | 0.54 | MIT1002_00230 | | peptidase PmbA | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.32 | B158DRAFT_0366 | | DNA replication and repair protein RecF | 0.43 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | low | > 40 |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS00765 | | DNA replication/repair protein RecF | 0.43 | ABIE51_RS06805 | | metalloprotease PmbA | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.25 | ABZR86_RS15145 | | DNA replication/repair protein RecF | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.25 | Xcc-8004.4.1 | | DNA recombination and repair protein RecF | 0.45 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | low | > 74 |
| Rhodanobacter sp000427505 FW510-R12 | 0.25 | LRK53_RS00015 | | DNA replication/repair protein RecF | 0.45 | LRK53_RS06580 | | metalloprotease PmbA | low | > 60 |
| Rhodanobacter denitrificans FW104-10B01 | 0.25 | LRK54_RS08475 | | DNA replication/repair protein RecF | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.25 | LRK55_RS08240 | | DNA replication/repair protein RecF | 0.45 | LRK55_RS03125 | | metalloprotease PmbA | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.23 | OKGIIK_15255 | recF | DNA replication/repair protein RecF | 0.45 | OKGIIK_10260 | pmbA | metalloprotease PmbA | low | > 52 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.16 | CA265_RS24760 | | DNA replication and repair protein RecF | 0.06 | CA265_RS02445 | | peptidase C69 | low | > 88 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.16 | BT4255 | | DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) | 0.18 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.15 | HMPREF1181_RS06185 | | DNA replication and repair protein RecF | 0.17 | HMPREF1181_RS03170 | | TldD/PmbA family protein | low | > 56 |
| Rhizobium sp. OAE497 | 0.15 | ABIE40_RS00200 | | DNA replication/repair protein RecF | 0.25 | ABIE40_RS03780 | | TldD/PmbA family protein | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.14 | SMc02863 | | recombination protein F | 0.27 | SMc00897 | | PMBA protein | low | > 103 |
| Agrobacterium fabrum C58 | 0.14 | Atu0073 | | recF-like protein | 0.25 | Atu0693 | | PmbA/TldD related protein | low | > 89 |
| Parabacteroides merdae CL09T00C40 | 0.14 | HMPREF1078_RS14620 | | DNA replication and repair protein RecF | 0.15 | HMPREF1078_RS03625 | | TldD/PmbA family protein | low | > 61 |
| Sphingomonas koreensis DSMZ 15582 | 0.13 | Ga0059261_2727 | | DNA replication and repair protein RecF | 0.31 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | — | — |
| Azospirillum sp. SherDot2 | 0.13 | MPMX19_02716 | | DNA replication and repair protein RecF | 0.31 | MPMX19_01886 | | Metalloprotease PmbA | — | — |
| Rhodopseudomonas palustris CGA009 | 0.12 | TX73_000015 | | DNA replication/repair protein RecF | 0.28 | TX73_005930 | | TldD/PmbA family protein | low | > 86 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.12 | CA264_17475 | | DNA replication and repair protein RecF | 0.06 | CA264_16645 | | peptidase C69 | low | > 74 |
| Phaeobacter inhibens DSM 17395 | 0.12 | PGA1_c00030 | | DNA replication and repair protein RecF | 0.28 | PGA1_c33480 | | protein PmbA | — | — |
| Dinoroseobacter shibae DFL-12 | 0.12 | Dshi_3375 | | SMC domain protein (RefSeq) | 0.25 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.12 | A4249_RS15360 | | DNA replication/repair protein RecF | 0.25 | A4249_RS09195 | | TldD/PmbA family protein | low | > 48 |
| Azospirillum brasilense Sp245 | 0.11 | AZOBR_RS17670 | | recombinase RecF | 0.32 | AZOBR_RS11930 | | modulator protein | low | > 97 |
| Magnetospirillum magneticum AMB-1 | 0.11 | AMB_RS03285 | | DNA replication and repair protein RecF | 0.27 | AMB_RS22120 | | TldD/PmbA family protein | — | — |
| Rhodospirillum rubrum S1H | 0.11 | Rru_A0003 | | RecF protein (NCBI) | 0.25 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | — | — |
| Synechococcus elongatus PCC 7942 | 0.09 | Synpcc7942_2250 | recF | recombination protein F | 0.09 | Synpcc7942_1289 | pmbA | putative modulator of DNA gyrase | low | > 38 |
Not shown: 14 genomes with orthologs for CSW01_00065 only; 20 genomes with orthologs for CSW01_12845 only