Conservation of cofitness between CSW01_03930 and CSW01_04525 in Vibrio cholerae E7946 ATCC 55056

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 1.0 CSW01_04525 DUF188 domain-containing protein 0.47 7
Escherichia coli BL21 0.74 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent 0.61 ECD_00334 UPF0178 family protein low > 61
Escherichia coli ECOR38 0.74 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 HEPCGN_07245 yaiI YaiI/YqxD family protein low > 88
Escherichia coli BW25113 0.74 b2517 yfgB predicted enzyme (NCBI) 0.61 b0387 yaiI orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECOR27 0.74 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 NOLOHH_01530 yaiI YaiI/YqxD family protein low > 75
Escherichia coli ECRC62 0.74 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 BNILDI_22945 yaiI YaiI/YqxD family protein low > 75
Escherichia coli Nissle 1917 0.74 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 ECOLIN_RS02350 YaiI/YqxD family protein low > 55
Escherichia coli ECRC102 0.74 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 NIAGMN_06660 yaiI YaiI/YqxD family protein low > 80
Escherichia coli ECRC99 0.74 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 KEDOAH_19360 yaiI YaiI/YqxD family protein — —
Escherichia coli ECRC101 0.74 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 MCAODC_27830 yaiI YaiI/YqxD family protein low > 87
Escherichia coli ECRC98 0.74 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 JDDGAC_12260 yaiI YaiI/YqxD family protein low > 87
Escherichia coli ECRC100 0.74 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 OKFHMN_08605 yaiI YaiI/YqxD family protein low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.60 GFF4285 Protein YaiI low > 78
Klebsiella michiganensis M5al 0.74 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.62 BWI76_RS06175 DUF188 domain-containing protein low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN 0.61 OHPLBJKB_03287 hypothetical protein low > 74
Enterobacter sp. TBS_079 0.74 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.61 MPMX20_00977 hypothetical protein low > 85
Klebsiella pneumoniae MKP103 0.74 KDGMDA_28215 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.62 KDGMDA_14255 YaiI/YqxD family protein low > 94
Klebsiella pneumoniae MRSN742743 0.74 GJGHJB_01263 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.62 GJGHJB_03941 yaiI YaiI/YqxD family protein low > 83
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.61 EX28DRAFT_2584 Uncharacterized protein conserved in bacteria — —
Erwinia tracheiphila SCR3 0.74 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.64 LU632_RS18985 YaiI/YqxD family protein low > 73
Dickeya dadantii 3937 0.73 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.63 DDA3937_RS04360 YaiI/YqxD family protein low > 74
Dickeya dianthicola ME23 0.73 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.63 DZA65_RS04270 YaiI/YqxD family protein low > 75
Dickeya dianthicola 67-19 0.73 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.63 HGI48_RS04350 YaiI/YqxD family protein low > 71
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13516_RS05330 rlmN dual-specificity RNA methyltransferase RlmN 0.65 PagCFBP13516_RS15235 YaiI/YqxD family protein low > 80
Serratia liquefaciens MT49 0.73 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.66 IAI46_18550 YaiI/YqxD family protein low > 87
Pectobacterium carotovorum WPP14 0.73 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.70 HER17_RS17270 YaiI/YqxD family protein low > 75
Pantoea sp. MT58 0.73 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.65 IAI47_14940 YaiI/YqxD family protein low > 76
Erwinia tracheiphila HP pepo 2.2 0.73 IJEDHG_02785 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.64 IJEDHG_26185 YaiI/YqxD family protein low > 61
Rahnella sp. WP5 0.72 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.70 EX31_RS20265 YaiI/YqxD family protein low > 89
Shewanella loihica PV-4 0.71 Shew_1287 hypothetical protein (RefSeq) 0.68 Shew_2726 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.71 Shewana3_1226 hypothetical protein (RefSeq) 0.56 Shewana3_1627 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) 0.55 SO2894 YaiI/YqxD family protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.69 Sama_2368 hypothetical protein (RefSeq) 0.69 Sama_3557 hypothetical protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.69 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN 0.57 MIT1002_02273 hypothetical protein low > 70
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase 0.69 B158DRAFT_2279 Uncharacterized protein conserved in bacteria low > 40
Pseudomonas orientalis W4I3 0.55 QF045_RS25380 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.37 QF045_RS01825 YaiI/YqxD family protein low > 93
Pseudomonas fluorescens SBW25 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.36 PFLU_RS29120 YaiI/YqxD family protein low > 109
Pseudomonas simiae WCS417 0.55 PS417_23160 50S rRNA methyltransferase 0.38 PS417_27460 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.36 PFLU_RS29120 YaiI/YqxD family protein low > 109
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_04784 Dual-specificity RNA methyltransferase RlmN 0.33 GEMAOFIL_05627 hypothetical protein low > 96
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.37 AO353_08910 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.40 Pf6N2E2_4448 probable P23 protein — —
Pseudomonas sp. SVBP6 0.55 COO64_RS03935 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.36 COO64_RS01105 YaiI/YqxD family protein low > 91
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.39 AO356_12870 hypothetical protein low > 104
Pseudomonas sp. DMC3 0.54 GFF4342 Dual-specificity RNA methyltransferase RlmN 0.38 GFF340 hypothetical protein low > 89
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.37 PfGW456L13_869 probable P23 protein low > 87
Pseudomonas aeruginosa MRSN321 0.54 PFGADD_01155 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.36 PFGADD_05497 YaiI/YqxD family protein low > 99
Pseudomonas aeruginosa PUPa3 0.54 NPBIFN_01173 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.37 NPBIFN_05573 YaiI/YqxD family protein low > 101
Pseudomonas aeruginosa PA14 0.54 IKLFDK_19600 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.37 IKLFDK_27225 YaiI/YqxD family protein low > 98
Pseudomonas protegens RBAN4 0.54 FABNJH_25075 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.37 FABNJH_30210 yaiI YaiI/YqxD family protein — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.38 Pf1N1B4_2203 probable P23 protein — —
Pseudomonas segetis P6 0.54 ACVTMO_RS07505 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.36 ACVTMO_RS22375 YaiI/YqxD family protein low > 75
Pseudomonas stutzeri RCH2 0.54 Psest_1259 23S rRNA m2A2503 methyltransferase 0.38 Psest_3736 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas putida KT2440 0.54 PP_0850 Dual-specificity RNA methyltransferase RlmN 0.38 PP_5221 conserved protein of unknown function, UPF0178 family low > 96
Pseudomonas sp. BP01 0.53 JOY50_RS22780 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.37 JOY50_RS22565 YaiI/YqxD family protein low > 84
Pseudomonas sp. S08-1 0.53 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.39 OH686_13970 Protein YaiI low > 80
Marinobacter adhaerens HP15 0.52 HP15_1490 conserved hypothetical protein 0.56 HP15_841 YaiI/YqxD-like protein low > 73
Dechlorosoma suillum PS 0.51 Dsui_3145 23S rRNA m2A2503 methyltransferase 0.60 Dsui_0282 hypothetical protein — —
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.56 ABZR86_RS00425 YaiI/YqxD family protein low > 74
Acinetobacter radioresistens SK82 0.50 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN 0.54 MPMX26_02216 hypothetical protein low > 36
Acinetobacter baumannii LAC-4 0.50 RR41_RS16460 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.56 RR41_RS04535 YaiI/YqxD family protein low > 55
Methylophilus sp. DMC18 0.50 GFF1191 Dual-specificity RNA methyltransferase RlmN 0.62 GFF251 hypothetical protein low > 43
Ralstonia solanacearum PSI07 0.49 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.50 RPSI07_RS06560 YaiI/YqxD family protein low > 81
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.53 Xcc-8004.2266.1 FIG01211351: hypothetical protein low > 74
Lysobacter sp. OAE881 0.48 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.60 ABIE51_RS09850 YaiI/YqxD family protein low > 62
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS14810 50S rRNA methyltransferase 0.55 HSERO_RS02105 hypothetical protein — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN 0.53 BPHYT_RS28065 hypothetical protein low > 109
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.50 QEN71_RS38155 YaiI/YqxD family protein low > 153
Paraburkholderia graminis OAS925 0.45 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase 0.50 ABIE53_001465 uncharacterized protein YaiI (UPF0178 family) low > 113
Castellaniella sp019104865 MT123 0.43 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.58 ABCV34_RS01010 YaiI/YqxD family protein low > 48
Phaeobacter inhibens DSM 17395 0.40 PGA1_c36240 ribosomal RNA large subunit methyltransferase N 0.26 PGA1_c31620 Uncharacterized protein conserved in bacteria low > 62
Rhodospirillum rubrum S1H 0.40 Rru_A3329 hypothetical protein (NCBI) 0.31 Rru_A0086 Protein of unknown function DUF188 (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.38 Dshi_3311 radical SAM enzyme, Cfr family (RefSeq) 0.27 Dshi_0110 protein of unknown function DUF188 (RefSeq) low > 64
Azospirillum brasilense Sp245 0.38 AZOBR_RS00800 50S rRNA methyltransferase 0.31 AZOBR_RS09510 hypothetical protein — —
Rhodopseudomonas palustris CGA009 0.38 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.36 TX73_011305 YaiI/YqxD family protein low > 86
Azospirillum sp. SherDot2 0.37 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN 0.31 MPMX19_00625 hypothetical protein low > 112
Agrobacterium fabrum C58 0.37 Atu2673 hypothetical protein 0.29 Atu1478 hypothetical protein low > 89
Sinorhizobium meliloti 1021 0.37 SMc03831 hypothetical protein 0.34 SMc01271 hypothetical protein — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.31 Ga0059261_3406 Uncharacterized protein conserved in bacteria low > 68
Bosea sp. OAE506 0.36 ABIE41_RS04880 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.35 ABIE41_RS11800 YaiI/YqxD family protein low > 77
Magnetospirillum magneticum AMB-1 0.36 AMB_RS05715 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.33 AMB_RS14285 YaiI/YqxD family protein — —
Caulobacter crescentus NA1000 Δfur 0.36 CCNA_00133 radical SAM family enzyme 0.33 CCNA_01273 EMG2 protein low > 67
Xanthobacter sp. DMC5 0.36 GFF1781 Dual-specificity RNA methyltransferase RlmN 0.32 GFF1923 hypothetical protein — —
Caulobacter crescentus NA1000 0.36 CCNA_00133 radical SAM family enzyme 0.33 CCNA_01273 EMG2 protein low > 66
Rhizobium sp. OAE497 0.36 ABIE40_RS18200 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.31 ABIE40_RS09875 YaiI/YqxD family protein low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS12865 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.35 A4249_RS13965 YaiI/YqxD family protein low > 48
Sphingobium sp. HT1-2 0.34 GFF717 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.32 GFF1280 Bll3966 protein low > 95

Not shown: 35 genomes with orthologs for CSW01_03930 only; 0 genomes with orthologs for CSW01_04525 only