Conservation of cofitness between CSW01_04525 and CSW01_03930 in Vibrio cholerae E7946 ATCC 55056

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04525 DUF188 domain-containing protein 1.0 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.47 3
Rahnella sp. WP5 0.70 EX31_RS20265 YaiI/YqxD family protein 0.72 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 89
Pectobacterium carotovorum WPP14 0.70 HER17_RS17270 YaiI/YqxD family protein 0.73 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Kangiella aquimarina DSM 16071 0.69 B158DRAFT_2279 Uncharacterized protein conserved in bacteria 0.55 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase low > 40
Shewanella amazonensis SB2B 0.69 Sama_3557 hypothetical protein (RefSeq) 0.69 Sama_2368 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.68 Shew_2726 hypothetical protein (RefSeq) 0.71 Shew_1287 hypothetical protein (RefSeq) low > 60
Serratia liquefaciens MT49 0.66 IAI46_18550 YaiI/YqxD family protein 0.73 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Pantoea agglomerans CFBP13505 P0401 0.65 PagCFBP13516_RS15235 YaiI/YqxD family protein 0.73 PagCFBP13516_RS05330 rlmN dual-specificity RNA methyltransferase RlmN low > 80
Pantoea sp. MT58 0.65 IAI47_14940 YaiI/YqxD family protein 0.73 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 76
Erwinia tracheiphila SCR3 0.64 LU632_RS18985 YaiI/YqxD family protein 0.74 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 73
Erwinia tracheiphila HP pepo 2.2 0.64 IJEDHG_26185 YaiI/YqxD family protein 0.73 IJEDHG_02785 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 61
Dickeya dadantii 3937 0.63 DDA3937_RS04360 YaiI/YqxD family protein 0.73 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Dickeya dianthicola 67-19 0.63 HGI48_RS04350 YaiI/YqxD family protein 0.73 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS04270 YaiI/YqxD family protein 0.73 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Klebsiella michiganensis M5al 0.62 BWI76_RS06175 DUF188 domain-containing protein 0.74 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 92
Klebsiella pneumoniae MRSN742743 0.62 GJGHJB_03941 yaiI YaiI/YqxD family protein 0.74 GJGHJB_01263 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 83
Klebsiella pneumoniae MKP103 0.62 KDGMDA_14255 YaiI/YqxD family protein 0.74 KDGMDA_28215 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 94
Methylophilus sp. DMC18 0.62 GFF251 hypothetical protein 0.50 GFF1191 Dual-specificity RNA methyltransferase RlmN low > 43
Escherichia coli ECOR27 0.61 NOLOHH_01530 yaiI YaiI/YqxD family protein 0.74 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2584 Uncharacterized protein conserved in bacteria 0.74 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase — —
Escherichia coli ECRC98 0.61 JDDGAC_12260 yaiI YaiI/YqxD family protein 0.74 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03287 hypothetical protein 0.74 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN low > 74
Escherichia coli ECRC62 0.61 BNILDI_22945 yaiI YaiI/YqxD family protein 0.74 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Escherichia coli BL21 0.61 ECD_00334 UPF0178 family protein 0.74 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC99 0.61 KEDOAH_19360 yaiI YaiI/YqxD family protein 0.74 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN — —
Escherichia coli ECRC102 0.61 NIAGMN_06660 yaiI YaiI/YqxD family protein 0.74 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 80
Escherichia coli BW25113 0.61 b0387 yaiI orf, hypothetical protein (VIMSS) 0.74 b2517 yfgB predicted enzyme (NCBI) low > 76
Escherichia coli ECRC100 0.61 OKFHMN_08605 yaiI YaiI/YqxD family protein 0.74 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 79
Escherichia coli Nissle 1917 0.61 ECOLIN_RS02350 YaiI/YqxD family protein 0.74 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 55
Escherichia coli ECRC101 0.61 MCAODC_27830 yaiI YaiI/YqxD family protein 0.74 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 87
Enterobacter sp. TBS_079 0.61 MPMX20_00977 hypothetical protein 0.74 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN low > 85
Escherichia coli ECOR38 0.61 HEPCGN_07245 yaiI YaiI/YqxD family protein 0.74 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 88
Dechlorosoma suillum PS 0.60 Dsui_0282 hypothetical protein 0.51 Dsui_3145 23S rRNA m2A2503 methyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF4285 Protein YaiI 0.74 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 78
Lysobacter sp. OAE881 0.60 ABIE51_RS09850 YaiI/YqxD family protein 0.48 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 62
Castellaniella sp019104865 MT123 0.58 ABCV34_RS01010 YaiI/YqxD family protein 0.43 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 48
Alteromonas macleodii MIT1002 0.57 MIT1002_02273 hypothetical protein 0.69 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN low > 70
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS00425 YaiI/YqxD family protein 0.50 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 74
Marinobacter adhaerens HP15 0.56 HP15_841 YaiI/YqxD-like protein 0.52 HP15_1490 conserved hypothetical protein low > 73
Shewanella sp. ANA-3 0.56 Shewana3_1627 hypothetical protein (RefSeq) 0.71 Shewana3_1226 hypothetical protein (RefSeq) — —
Acinetobacter baumannii LAC-4 0.56 RR41_RS04535 YaiI/YqxD family protein 0.50 RR41_RS16460 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 55
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS02105 hypothetical protein 0.47 HSERO_RS14810 50S rRNA methyltransferase — —
Shewanella oneidensis MR-1 0.55 SO2894 YaiI/YqxD family protein (NCBI ptt file) 0.71 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) low > 76
Acinetobacter radioresistens SK82 0.54 MPMX26_02216 hypothetical protein 0.50 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN low > 36
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS28065 hypothetical protein 0.46 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN low > 109
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.2266.1 FIG01211351: hypothetical protein 0.48 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 74
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS38155 YaiI/YqxD family protein 0.46 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 153
Paraburkholderia graminis OAS925 0.50 ABIE53_001465 uncharacterized protein YaiI (UPF0178 family) 0.45 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase low > 113
Ralstonia solanacearum PSI07 0.50 RPSI07_RS06560 YaiI/YqxD family protein 0.49 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 81
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_4448 probable P23 protein 0.55 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Pseudomonas sp. S08-1 0.39 OH686_13970 Protein YaiI 0.53 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_12870 hypothetical protein 0.55 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase low > 104
Pseudomonas stutzeri RCH2 0.38 Psest_3736 Uncharacterized protein conserved in bacteria 0.54 Psest_1259 23S rRNA m2A2503 methyltransferase low > 67
Pseudomonas putida KT2440 0.38 PP_5221 conserved protein of unknown function, UPF0178 family 0.54 PP_0850 Dual-specificity RNA methyltransferase RlmN low > 96
Pseudomonas sp. DMC3 0.38 GFF340 hypothetical protein 0.54 GFF4342 Dual-specificity RNA methyltransferase RlmN low > 89
Pseudomonas simiae WCS417 0.38 PS417_27460 hypothetical protein 0.55 PS417_23160 50S rRNA methyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2203 probable P23 protein 0.54 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_869 probable P23 protein 0.54 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 87
Pseudomonas protegens RBAN4 0.37 FABNJH_30210 yaiI YaiI/YqxD family protein 0.54 FABNJH_25075 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Pseudomonas sp. BP01 0.37 JOY50_RS22565 YaiI/YqxD family protein 0.53 JOY50_RS22780 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 84
Pseudomonas orientalis W4I3 0.37 QF045_RS01825 YaiI/YqxD family protein 0.55 QF045_RS25380 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 93
Pseudomonas aeruginosa PUPa3 0.37 NPBIFN_05573 YaiI/YqxD family protein 0.54 NPBIFN_01173 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 101
Pseudomonas aeruginosa PA14 0.37 IKLFDK_27225 YaiI/YqxD family protein 0.54 IKLFDK_19600 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 98
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_08910 hypothetical protein 0.55 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase low > 101
Pseudomonas sp. SVBP6 0.36 COO64_RS01105 YaiI/YqxD family protein 0.55 COO64_RS03935 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 91
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS29120 YaiI/YqxD family protein 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas fluorescens SBW25 0.36 PFLU_RS29120 YaiI/YqxD family protein 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas segetis P6 0.36 ACVTMO_RS22375 YaiI/YqxD family protein 0.54 ACVTMO_RS07505 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 75
Pseudomonas aeruginosa MRSN321 0.36 PFGADD_05497 YaiI/YqxD family protein 0.54 PFGADD_01155 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 99
Rhodopseudomonas palustris CGA009 0.36 TX73_011305 YaiI/YqxD family protein 0.38 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 86
Bosea sp. OAE506 0.35 ABIE41_RS11800 YaiI/YqxD family protein 0.36 ABIE41_RS04880 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.35 A4249_RS13965 YaiI/YqxD family protein 0.36 A4249_RS12865 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 48
Sinorhizobium meliloti 1021 0.34 SMc01271 hypothetical protein 0.37 SMc03831 hypothetical protein — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS14285 YaiI/YqxD family protein 0.36 AMB_RS05715 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01273 EMG2 protein 0.36 CCNA_00133 radical SAM family enzyme low > 67
Caulobacter crescentus NA1000 0.33 CCNA_01273 EMG2 protein 0.36 CCNA_00133 radical SAM family enzyme low > 66
Pseudomonas lactucae CFBP13502 0.33 GEMAOFIL_05627 hypothetical protein 0.55 GEMAOFIL_04784 Dual-specificity RNA methyltransferase RlmN low > 96
Sphingobium sp. HT1-2 0.32 GFF1280 Bll3966 protein 0.34 GFF717 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) low > 95
Xanthobacter sp. DMC5 0.32 GFF1923 hypothetical protein 0.36 GFF1781 Dual-specificity RNA methyltransferase RlmN — —
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_3406 Uncharacterized protein conserved in bacteria 0.37 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 68
Azospirillum sp. SherDot2 0.31 MPMX19_00625 hypothetical protein 0.37 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN low > 112
Rhizobium sp. OAE497 0.31 ABIE40_RS09875 YaiI/YqxD family protein 0.36 ABIE40_RS18200 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 107
Rhodospirillum rubrum S1H 0.31 Rru_A0086 Protein of unknown function DUF188 (NCBI) 0.40 Rru_A3329 hypothetical protein (NCBI) low > 58
Azospirillum brasilense Sp245 0.31 AZOBR_RS09510 hypothetical protein 0.38 AZOBR_RS00800 50S rRNA methyltransferase — —
Agrobacterium fabrum C58 0.29 Atu1478 hypothetical protein 0.37 Atu2673 hypothetical protein low > 89
Dinoroseobacter shibae DFL-12 0.27 Dshi_0110 protein of unknown function DUF188 (RefSeq) 0.38 Dshi_3311 radical SAM enzyme, Cfr family (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.26 PGA1_c31620 Uncharacterized protein conserved in bacteria 0.40 PGA1_c36240 ribosomal RNA large subunit methyltransferase N low > 62

Not shown: 0 genomes with orthologs for CSW01_04525 only; 35 genomes with orthologs for CSW01_03930 only