| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.0 | CSW01_03020 | | serine endoprotease DegQ | 0.42 | 12 |
| Rahnella sp. WP5 | 0.73 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.56 | EX31_RS12475 | | Do family serine endopeptidase | low | > 89 |
| Klebsiella michiganensis M5al | 0.72 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.58 | BWI76_RS25365 | | serine endoprotease DegQ | low | > 92 |
| Escherichia coli ECOR38 | 0.72 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 0.57 | HEPCGN_16675 | degQ | serine endoprotease DegQ | low | > 87 |
| Escherichia coli ECRC99 | 0.72 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | KEDOAH_10345 | degQ | serine endoprotease DegQ | — | — |
| Escherichia coli ECRC100 | 0.72 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | OKFHMN_17805 | degQ | serine endoprotease DegQ | low | > 80 |
| Escherichia coli BW25113 | 0.72 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 0.57 | b3234 | degQ | serine endoprotease, periplasmic (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.72 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 0.57 | ECD_03094 | | serine endoprotease, periplasmic | low | > 61 |
| Escherichia coli ECRC98 | 0.72 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | JDDGAC_21430 | degQ | serine endoprotease DegQ | low | > 86 |
| Escherichia coli ECRC102 | 0.72 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | NIAGMN_15565 | degQ | serine endoprotease DegQ | — | — |
| Escherichia coli ECOR27 | 0.72 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | NOLOHH_09605 | degQ | serine endoprotease DegQ | low | > 75 |
| Escherichia fergusonii Becca | 0.72 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 0.57 | EFB2_00596 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 86 |
| Escherichia coli ECRC101 | 0.72 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | MCAODC_08325 | degQ | serine endoprotease DegQ | low | > 87 |
| Escherichia coli Nissle 1917 | 0.72 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | ECOLIN_RS18545 | | serine endoprotease DegQ | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.72 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 0.57 | OHPLBJKB_00470 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 73 |
| Escherichia coli ECRC62 | 0.72 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | BNILDI_01930 | degQ | serine endoprotease DegQ | low | > 75 |
| Enterobacter asburiae PDN3 | 0.70 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.57 | EX28DRAFT_3283 | | periplasmic serine protease, Do/DeqQ family | low | > 76 |
| Pantoea sp. MT58 | 0.70 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.57 | IAI47_17260 | | serine endoprotease DegQ | low | > 76 |
| Serratia liquefaciens MT49 | 0.70 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.63 | IAI46_22390 | | serine endoprotease DegQ | low | > 86 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.57 | MPMX20_04138 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 85 |
| Erwinia amylovora T8 | 0.69 | OLJFJH_08575 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.52 | OLJFJH_00660 | | serine endoprotease DegP | 0.46 | 1 |
| Erwinia tracheiphila SCR3 | 0.69 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.54 | LU632_RS21355 | | Do family serine endopeptidase | low | > 74 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.63 | DDA3937_RS01605 | | serine endoprotease DegQ | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.68 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.58 | GFF2974 | | Outer membrane stress sensor protease DegQ, serine protease | low | > 78 |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.63 | DZA65_RS01585 | | serine endoprotease DegQ | low | > 75 |
| Dickeya dianthicola 67-19 | 0.67 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.63 | HGI48_RS01520 | | serine endoprotease DegQ | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.67 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.62 | HER17_RS19985 | | serine endoprotease DegQ | low | > 75 |
| Shewanella sp. ANA-3 | 0.66 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.60 | Shewana3_0690 | | peptidase Do (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.65 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | 0.60 | SO3942 | | serine protease, HtrA/DegQ/DegS family (NCBI ptt file) | — | — |
| Shewanella amazonensis SB2B | 0.64 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.63 | Sama_3073 | | serine protease (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.63 | Shew_3224 | | hypothetical protein (RefSeq) | 0.60 | Shew_3296 | | protease Do (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.48 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | 0.28 | HP15_779 | | serine protease MucD precursor | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | 0.59 | MIT1002_00842 | | Periplasmic pH-dependent serine endoprotease DegQ precursor | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | 0.26 | B158DRAFT_2183 | | periplasmic serine protease, Do/DeqQ family | low | > 40 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_08050 | | 16S rRNA methyltransferase | 0.28 | AO353_17640 | | serine peptidase | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_13565 | | 16S rRNA methyltransferase | 0.28 | AO356_04560 | | serine peptidase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.43 | PS417_26545 | | 16S rRNA methyltransferase | 0.28 | PS417_07135 | | serine peptidase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.28 | Pf6N2E2_2753 | | HtrA protease/chaperone protein | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.29 | PFLU_RS07245 | | DegQ family serine endoprotease | low | > 109 |
| Pseudomonas aeruginosa PA14 | 0.43 | IKLFDK_23325 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.29 | IKLFDK_03285 | | serine protease MucD | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.29 | PFLU_RS07245 | | DegQ family serine endoprotease | low | > 109 |
| Pseudomonas sp. SVBP6 | 0.43 | COO64_RS13645 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.28 | COO64_RS16540 | | DegQ family serine endoprotease | low | > 93 |
| Pseudomonas sp. DMC3 | 0.43 | GFF180 | | Ribosomal RNA small subunit methyltransferase E | 0.28 | GFF2280 | | Periplasmic serine endoprotease DegP | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.28 | PfGW456L13_4513 | | HtrA protease/chaperone protein | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.28 | Pf1N1B4_3326 | | HtrA protease/chaperone protein | — | — |
| Pseudomonas sp. BP01 | 0.42 | JOY50_RS09765 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.28 | JOY50_RS14680 | | DegQ family serine endoprotease | low | > 84 |
| Pseudomonas putida KT2440 | 0.42 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.28 | PP_1430 | | putative periplasmic serine endoprotease DegP-like | low | > 96 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.27 | OH686_20060 | | HtrA protease/chaperone protein | low | > 80 |
| Methylophilus sp. DMC18 | 0.41 | GFF2490 | | Ribosomal RNA small subunit methyltransferase E | 0.30 | GFF1457 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 43 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.28 | Psest_3096 | | periplasmic serine protease, Do/DeqQ family | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.38 | Xcc-8004.4948.1 | | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | ABZR86_RS17545 | | DegQ family serine endoprotease | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.27 | MPMX26_02161 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 36 |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | ABIE51_RS03265 | | trypsin-like peptidase domain-containing protein | low | > 62 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | LRK54_RS06430 | | Do family serine endopeptidase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | LRK55_RS06175 | | Do family serine endopeptidase | low | > 63 |
| Dechlorosoma suillum PS | 0.35 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.29 | Dsui_1606 | | periplasmic serine protease, Do/DeqQ family | — | — |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | OKGIIK_00150 | | Periplasmic serine endoprotease DegP-like | low | > 52 |
| Rhodanobacter sp000427505 FW510-R12 | 0.34 | LRK53_RS05765 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | LRK53_RS17720 | | Do family serine endopeptidase | low | > 60 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.28 | HSERO_RS21975 | | peptidase | low | > 78 |
| Bacteroides stercoris CC31F | 0.19 | HMPREF1181_RS05940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.25 | HMPREF1181_RS10785 | | trypsin-like peptidase domain-containing protein | low | > 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.18 | CA265_RS23620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | CA265_RS23030 | | serine protease | low | > 88 |
| Phaeobacter inhibens DSM 17395 | 0.18 | PGA1_c02950 | | RNA methyltransferase-like protein | 0.27 | PGA1_c23690 | | protease do | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.18 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | 0.29 | Dshi_2733 | | protease Do (RefSeq) | low | > 64 |
| Caulobacter crescentus NA1000 Δfur | 0.18 | CCNA_03528 | | RNA methyltransferase | 0.25 | CCNA_02846 | | DegP/HtrA-family serine protease | low | > 67 |
| Caulobacter crescentus NA1000 | 0.18 | CCNA_03528 | | RNA methyltransferase | 0.25 | CCNA_02846 | | DegP/HtrA-family serine protease | low | > 66 |
| Sphingomonas koreensis DSMZ 15582 | 0.18 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | 0.28 | Ga0059261_1382 | | periplasmic serine protease, Do/DeqQ family | low | > 68 |
| Phocaeicola dorei CL03T12C01 | 0.18 | ABI39_RS18150 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.25 | ABI39_RS13980 | | Do family serine endopeptidase | low | > 72 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.18 | ABZR88_RS17085 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | ABZR88_RS21675 | | Do family serine endopeptidase | low | > 71 |
| Phocaeicola vulgatus CL09T03C04 | 0.18 | HMPREF1058_RS05940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.25 | HMPREF1058_RS17765 | | Do family serine endopeptidase | 0.53 | 59 |
| Bacteroides ovatus ATCC 8483 | 0.17 | BACOVA_05130 | | RNA methyltransferase, RsmE family | 0.27 | BACOVA_00614 | | peptidase Do | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.17 | BT4328 | | conserved hypothetical protein (NCBI ptt file) | 0.28 | BT1312 | | serine protease precursor (NCBI ptt file) | low | > 81 |
| Bosea sp. OAE506 | 0.17 | ABIE41_RS23100 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.28 | ABIE41_RS12865 | | DegQ family serine endoprotease | low | > 77 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | ABIE40_RS20720 | | DegQ family serine endoprotease | low | > 107 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.17 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.28 | A4249_RS07900 | | Do family serine endopeptidase | — | — |
| Xanthobacter sp. DMC5 | 0.16 | GFF1000 | | Ribosomal RNA small subunit methyltransferase E | 0.29 | GFF3126 | | Periplasmic serine endoprotease DegP | — | — |
| Rhodopseudomonas palustris CGA009 | 0.16 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | TX73_016660 | | DegQ family serine endoprotease | low | > 86 |
| Agrobacterium fabrum C58 | 0.16 | Atu0657 | | hypothetical protein | 0.31 | Atu0977 | | serine protease DO-like protease | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.15 | SMc00826 | | 16S ribosomal RNA methyltransferase RsmE | 0.29 | SMc02365 | | protease precursor protein | low | > 103 |
| Magnetospirillum magneticum AMB-1 | 0.15 | AMB_RS01240 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | AMB_RS17615 | | PDZ domain-containing protein | low | > 64 |
| Rhodospirillum rubrum S1H | 0.11 | Rru_A0571 | | hypothetical protein (NCBI) | 0.30 | Rru_A2662 | | Peptidase S1C, Do (NCBI) | low | > 58 |
Not shown: 27 genomes with orthologs for CSW01_02495 only; 2 genomes with orthologs for CSW01_03020 only