Conservation of cofitness between CSW01_13300 and CSW01_00280 in Vibrio cholerae E7946 ATCC 55056

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13300 3-dehydroquinate synthase 1.0 CSW01_00280 shikimate dehydrogenase 0.71 3
Pantoea agglomerans CFBP13505 P0401 0.63 PagCFBP13516_RS01895 aroB 3-dehydroquinate synthase 0.50 PagCFBP13516_RS02330 aroE shikimate dehydrogenase — —
Shewanella oneidensis MR-1 0.63 SO0287 aroB 3-dehydroquinate synthase (NCBI ptt file) 0.51 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.97 1
Pantoea sp. MT58 0.63 IAI47_01895 3-dehydroquinate synthase 0.50 IAI47_02315 shikimate dehydrogenase — —
Shewanella sp. ANA-3 0.63 Shewana3_3893 aroB 3-dehydroquinate synthase (RefSeq) 0.51 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.98 1
Rahnella sp. WP5 0.62 EX31_RS04720 3-dehydroquinate synthase 0.47 EX31_RS15950 shikimate dehydrogenase — —
Erwinia amylovora T8 0.62 OLJFJH_04090 3-dehydroquinate synthase 0.48 OLJFJH_03685 shikimate dehydrogenase — —
Shewanella loihica PV-4 0.62 Shew_0214 3-dehydroquinate synthase (RefSeq) 0.53 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.97 1
Shewanella amazonensis SB2B 0.62 Sama_3367 3-dehydroquinate synthase (RefSeq) 0.49 Sama_0052 shikimate dehydrogenase (RefSeq) 0.95 1
Enterobacter asburiae PDN3 0.60 EX28DRAFT_4153 3-dehydroquinate synthase (EC 4.2.3.4) 0.50 EX28DRAFT_0046 shikimate dehydrogenase 0.63 13
Enterobacter sp. TBS_079 0.60 MPMX20_04278 3-dehydroquinate synthase 0.49 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.90 1
Klebsiella pneumoniae MKP103 0.60 KDGMDA_06910 3-dehydroquinate synthase 0.48 KDGMDA_06515 shikimate dehydrogenase 0.55 45
Klebsiella pneumoniae MRSN742743 0.60 GJGHJB_00354 aroB 3-dehydroquinate synthase 0.48 GJGHJB_00433 aroE shikimate dehydrogenase 0.65 33
Escherichia coli BL21 0.60 ECD_03241 3-dehydroquinate synthase 0.48 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.87 1
Escherichia coli ECRC62 0.60 BNILDI_02615 aroB 3-dehydroquinate synthase 0.48 BNILDI_02165 aroE shikimate dehydrogenase 0.92 14
Escherichia coli ECOR27 0.60 NOLOHH_08905 aroB 3-dehydroquinate synthase 0.48 NOLOHH_09355 aroE shikimate dehydrogenase 0.84 1
Escherichia coli BW25113 0.60 b3389 aroB 3-dehydroquinate synthase (NCBI) 0.48 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.99 1
Serratia liquefaciens MT49 0.60 IAI46_23700 3-dehydroquinate synthase 0.48 IAI46_23240 shikimate dehydrogenase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_00314 3-dehydroquinate synthase 0.48 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.49 8
Escherichia coli Nissle 1917 0.59 ECOLIN_RS19360 3-dehydroquinate synthase 0.48 ECOLIN_RS18840 shikimate dehydrogenase 0.89 1
Escherichia fergusonii Becca 0.59 EFB2_00439 3-dehydroquinate synthase 0.47 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Escherichia coli ECOR38 0.59 HEPCGN_15935 aroB 3-dehydroquinate synthase 0.48 HEPCGN_16385 aroE shikimate dehydrogenase 0.92 2
Escherichia coli ECRC99 0.59 KEDOAH_11025 aroB 3-dehydroquinate synthase 0.48 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECRC102 0.59 NIAGMN_14885 aroB 3-dehydroquinate synthase 0.48 NIAGMN_15325 aroE shikimate dehydrogenase 0.97 1
Dickeya dadantii 3937 0.59 DDA3937_RS19545 3-dehydroquinate synthase 0.43 DDA3937_RS19100 shikimate dehydrogenase — —
Escherichia coli ECRC98 0.59 JDDGAC_20745 aroB 3-dehydroquinate synthase 0.48 JDDGAC_21185 aroE shikimate dehydrogenase 0.82 22
Escherichia coli ECRC101 0.59 MCAODC_07645 aroB 3-dehydroquinate synthase 0.48 MCAODC_08085 aroE shikimate dehydrogenase 0.96 1
Escherichia coli ECRC100 0.59 OKFHMN_17115 aroB 3-dehydroquinate synthase 0.48 OKFHMN_17565 aroE shikimate dehydrogenase 0.97 5
Klebsiella michiganensis M5al 0.59 BWI76_RS26085 3-dehydroquinate synthase 0.47 BWI76_RS25645 shikimate dehydrogenase 0.55 65
Dickeya dianthicola ME23 0.59 DZA65_RS20760 3-dehydroquinate synthase 0.43 DZA65_RS20315 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.59 HGI48_RS19675 3-dehydroquinate synthase 0.43 HGI48_RS19190 shikimate dehydrogenase — —
Alteromonas macleodii MIT1002 0.58 MIT1002_00447 3-dehydroquinate synthase 0.36 MIT1002_00029 Shikimate dehydrogenase — —
Erwinia tracheiphila SCR3 0.58 LU632_RS22865 aroB 3-dehydroquinate synthase 0.48 LU632_RS22445 aroE shikimate dehydrogenase 0.61 42
Erwinia tracheiphila HP pepo 2.2 0.58 IJEDHG_12035 aroB 3-dehydroquinate synthase 0.47 IJEDHG_12505 aroE shikimate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS01780 3-dehydroquinate synthase 0.44 HER17_RS02250 shikimate dehydrogenase 0.90 11
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF630 3-dehydroquinate synthase (EC 4.2.3.4) 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.96 2
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_275 3-dehydroquinate synthase (EC 4.2.3.4) 0.55 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 30
Pseudomonas sp. BP01 0.54 JOY50_RS09305 aroB 3-dehydroquinate synthase 0.53 JOY50_RS08210 aroE shikimate dehydrogenase — —
Pseudomonas segetis P6 0.54 ACVTMO_RS20995 aroB 3-dehydroquinate synthase 0.52 ACVTMO_RS01390 aroE shikimate dehydrogenase — —
Pseudomonas putida KT2440 0.54 PP_5078 3-dehydroquinate synthase 0.53 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3754 3-dehydroquinate synthase (EC 4.2.3.4) 0.54 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_09385 3-dehydroquinate synthase 0.53 AO356_11315 shikimate dehydrogenase — —
Pseudomonas simiae WCS417 0.54 PS417_01985 3-dehydroquinate synthase 0.54 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_1537 3-dehydroquinate synthase (EC 4.2.3.4) 0.55 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas orientalis W4I3 0.54 QF045_RS05050 3-dehydroquinate synthase 0.55 QF045_RS03060 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.53 PFLU_RS02030 3-dehydroquinate synthase 0.54 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS02030 3-dehydroquinate synthase 0.54 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_00630 3-dehydroquinate synthase 0.53 GEMAOFIL_00231 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas protegens RBAN4 0.53 FABNJH_02355 aroB 3-dehydroquinate synthase 0.55 FABNJH_00150 aroE shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_12505 3-dehydroquinate synthase 0.56 AO353_10670 shikimate dehydrogenase — —
Pseudomonas sp. RS175 0.52 PFR28_05013 3-dehydroquinate synthase 0.55 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas sp. FW215-L2 0.52 GFF1054 3-dehydroquinate synthase 0.55 GFF396 Shikimate dehydrogenase (NADP(+)) — —
Marinobacter adhaerens HP15 0.52 HP15_480 3-dehydroquinate synthase 0.50 HP15_3750 shikimate dehydrogenase — —
Pseudomonas aeruginosa PA14 0.52 IKLFDK_28340 3-dehydroquinate synthase 0.52 IKLFDK_25435 shikimate dehydrogenase — —
Pseudomonas sp. DMC3 0.52 GFF3100 3-dehydroquinate synthase 0.55 GFF600 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas aeruginosa PUPa3 0.52 NPBIFN_05353 aroB 3-dehydroquinate synthase 0.52 NPBIFN_00025 aroE shikimate dehydrogenase — —
Pseudomonas sp. SVBP6 0.52 COO64_RS13075 aroB 3-dehydroquinate synthase 0.53 COO64_RS02250 aroE shikimate dehydrogenase — —
Methylophilus sp. DMC18 0.52 GFF2236 3-dehydroquinate synthase 0.40 GFF2019 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas aeruginosa MRSN321 0.51 PFGADD_05277 aroB 3-dehydroquinate synthase 0.52 PFGADD_00025 aroE shikimate dehydrogenase — —
Pseudomonas sp. S08-1 0.51 OH686_10015 3-dehydroquinate synthase 0.57 OH686_12485 Shikimate 5-dehydrogenase I alpha — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_0409 3-dehydroquinate synthase 0.56 Psyr_0025 shikimate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_0409 3-dehydroquinate synthase 0.56 Psyr_0025 shikimate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.50 Psest_3713 3-dehydroquinate synthase 0.53 Psest_0029 shikimate 5-dehydrogenase — —
Variovorax sp. OAS795 0.50 ABID97_RS23255 3-dehydroquinate synthase 0.32 ABID97_RS06300 shikimate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS28035 3-dehydroquinate synthase 0.45 QEN71_RS27130 shikimate dehydrogenase 0.77 37
Dechlorosoma suillum PS 0.49 Dsui_1095 3-dehydroquinate synthase 0.51 Dsui_0443 shikimate 5-dehydrogenase — —
Paraburkholderia graminis OAS925 0.49 ABIE53_003740 3-dehydroquinate synthase 0.45 ABIE53_003560 shikimate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_05615 3-dehydroquinate synthase 0.45 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS17885 3-dehydroquinate synthase 0.45 BPHYT_RS16975 shikimate 5-dehydrogenase 0.76 54
Acinetobacter baumannii LAC-4 0.48 RR41_RS01585 3-dehydroquinate synthase 0.37 RR41_RS01995 shikimate dehydrogenase — —
Variovorax sp. SCN45 0.48 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) 0.34 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 127
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS19005 3-dehydroquinate synthase 0.38 RR42_RS17645 shikimate dehydrogenase 0.74 12
Ralstonia solanacearum GMI1000 0.48 RS_RS14880 3-dehydroquinate synthase 0.44 RS_RS13890 shikimate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS06935 3-dehydroquinate synthase 0.44 RALBFv3_RS05945 shikimate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF1331 3-dehydroquinate synthase (EC 4.2.3.4) 0.42 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.60 18
Ralstonia solanacearum UW163 0.48 UW163_RS06680 3-dehydroquinate synthase 0.44 UW163_RS07680 shikimate dehydrogenase — —
Ralstonia solanacearum PSI07 0.48 RPSI07_RS10300 3-dehydroquinate synthase 0.44 RPSI07_RS11300 shikimate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS02590 3-dehydroquinate synthase 0.42 ABZR87_RS01605 shikimate dehydrogenase 0.55 48
Acidovorax sp. GW101-3H11 0.47 Ac3H11_4705 3-dehydroquinate synthase (EC 4.2.3.4) 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.83 2
Acinetobacter radioresistens SK82 0.47 MPMX26_02810 3-dehydroquinate synthase 0.37 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS12705 3-dehydroquinate synthase 0.39 ABCV34_RS11620 shikimate dehydrogenase — —
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0764 3-dehydroquinate synthase (EC 4.2.3.4) 0.29 B158DRAFT_0259 shikimate 5-dehydrogenase 0.96 1
Lysobacter sp. OAE881 0.41 ABIE51_RS16100 3-dehydroquinate synthase 0.30 ABIE51_RS01815 shikimate dehydrogenase — —
Rhodanobacter sp000427505 FW510-R12 0.41 LRK53_RS05620 3-dehydroquinate synthase 0.32 LRK53_RS02375 shikimate dehydrogenase — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS04310 3-dehydroquinate synthase 0.34 LRK54_RS08595 shikimate dehydrogenase — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS04085 3-dehydroquinate synthase 0.34 LRK55_RS08360 shikimate dehydrogenase — —
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.1615.1 3-dehydroquinate synthase (EC 4.2.3.4) 0.34 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 10
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_11185 aroB 3-dehydroquinate synthase 0.31 OKGIIK_15365 aroE shikimate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS10480 3-dehydroquinate synthase 0.32 ABZR86_RS14985 shikimate dehydrogenase 0.84 6

Not shown: 19 genomes with orthologs for CSW01_13300 only; 2 genomes with orthologs for CSW01_00280 only