Conservation of cofitness between BPHYT_RS13220 and BPHYT_RS14895 in Burkholderia phytofirmans PsJN

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS13220 phosphomethylpyrimidine synthase 1.0 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.67 19
Paraburkholderia graminis OAS925 0.99 ABIE53_002857 phosphomethylpyrimidine synthase 0.91 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.98 H281DRAFT_00395 hydroxymethylpyrimidine synthase 0.95 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.95 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC 0.90 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.85 11
Herbaspirillum seropedicae SmR1 0.85 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.62 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.75 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.18 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Rhodanobacter sp. FW510-T8 0.74 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC 0.17 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.74 Xcc-8004.1066.1 hypothetical protein 0.15 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.56 73
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas fluorescens SBW25 0.73 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_0544 hydroxymethylpyrimidine synthase 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_0544 hydroxymethylpyrimidine synthase 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas simiae WCS417 0.73 PS417_02355 thiamine biosynthesis protein ThiC 0.21 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase low > 88
Lysobacter sp. OAE881 0.73 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.72 ABZR88_RS08840 phosphomethylpyrimidine synthase ThiC 0.25 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.72 CA264_20435 phosphomethylpyrimidine synthase ThiC 0.21 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.71 CA265_RS20165 phosphomethylpyrimidine synthase ThiC 0.24 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.71 Echvi_3567 thiamine biosynthesis protein ThiC 0.25 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Ralstonia solanacearum PSI07 0.69 RPSI07_RS23420 phosphomethylpyrimidine synthase ThiC 0.69 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.52 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Shewanella loihica PV-4 0.69 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.56 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 60
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS04785 phosphomethylpyrimidine synthase ThiC 0.70 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.56 44
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS01290 thiamine biosynthesis protein ThiC 0.67 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.81 9
Ralstonia solanacearum UW163 0.68 UW163_RS03640 phosphomethylpyrimidine synthase ThiC 0.69 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS09940 phosphomethylpyrimidine synthase ThiC 0.69 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Shewanella amazonensis SB2B 0.68 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.56 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 62
Rahnella sp. WP5 0.68 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.56 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.68 RS_RS00555 phosphomethylpyrimidine synthase 0.69 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Enterobacter sp. TBS_079 0.68 MPMX20_00217 Phosphomethylpyrimidine synthase 0.55 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4198 Thiamin biosynthesis protein ThiC 0.55 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Serratia liquefaciens MT49 0.67 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.54 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Enterobacter asburiae PDN3 0.67 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.54 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.55 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase 0.55 44
Escherichia fergusonii Becca 0.67 EFB2_04617 Phosphomethylpyrimidine synthase 0.55 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli ECOR27 0.67 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.54 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_0295 hydroxymethylpyrimidine synthase 0.21 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 40
Escherichia coli ECRC98 0.67 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.54 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli ECRC99 0.67 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.54 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC101 0.67 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.54 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECRC100 0.67 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.54 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli ECRC102 0.67 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.54 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.54 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Escherichia coli ECRC62 0.67 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.54 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli BW25113 0.67 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.54 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.48 64
Escherichia coli BL21 0.67 ECD_03871 phosphomethylpyrimidine synthase 0.54 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.55 34
Escherichia coli ECOR38 0.67 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.54 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.83 37
Klebsiella michiganensis M5al 0.67 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.54 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase low > 92
Pantoea sp. MT58 0.67 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.54 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dadantii 3937 0.67 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.55 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Erwinia tracheiphila SCR3 0.67 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.51 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Shewanella oneidensis MR-1 0.67 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.56 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_00335 phosphomethylpyrimidine synthase 0.58 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Alteromonas macleodii MIT1002 0.66 MIT1002_00097 Phosphomethylpyrimidine synthase 0.53 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella sp. ANA-3 0.66 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.56 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 73
Dickeya dianthicola ME23 0.66 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.54 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola 67-19 0.66 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.54 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum brasilense Sp245 0.64 AZOBR_RS07940 phosphomethylpyrimidine synthase 0.14 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Magnetospirillum magneticum AMB-1 0.63 AMB_RS01125 phosphomethylpyrimidine synthase 0.15 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sinorhizobium meliloti 1021 0.62 SM_b20615 thiamine biosynthesis protein ThiC 0.17 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phaeobacter inhibens DSM 17395 0.62 PGA1_c09110 thiamine biosynthesis protein ThiC 0.13 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Sphingomonas koreensis DSMZ 15582 0.62 Ga0059261_2424 hydroxymethylpyrimidine synthase 0.14 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Dinoroseobacter shibae DFL-12 0.62 Dshi_4080 thiamine biosynthesis protein ThiC (RefSeq) 0.14 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Agrobacterium fabrum C58 0.62 Atu2569 thiamine biosynthesis protein 0.22 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02109 thiamine biosynthesis protein thiC 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Caulobacter crescentus NA1000 0.61 CCNA_02109 thiamine biosynthesis protein thiC 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS15715 phosphomethylpyrimidine synthase ThiC 0.16 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.60 ABIE41_RS02770 phosphomethylpyrimidine synthase ThiC 0.14 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodopseudomonas palustris CGA009 0.60 TX73_018540 phosphomethylpyrimidine synthase ThiC 0.14 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum sp. SherDot2 0.60 MPMX19_00336 Phosphomethylpyrimidine synthase 0.13 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.57 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) 0.12 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Phocaeicola dorei CL03T12C01 0.56 ABI39_RS17760 phosphomethylpyrimidine synthase ThiC 0.27 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase low > 72
Bacteroides stercoris CC31F 0.56 HMPREF1181_RS14685 phosphomethylpyrimidine synthase ThiC 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase low > 56
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS03280 phosphomethylpyrimidine synthase ThiC 0.27 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Bacteroides ovatus ATCC 8483 0.56 BACOVA_02358 thiamine biosynthesis protein ThiC 0.28 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.56 BT0650 thiamine biosynthesis protein ThiC (NCBI ptt file) 0.28 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) — —
Parabacteroides merdae CL09T00C40 0.56 HMPREF1078_RS03485 phosphomethylpyrimidine synthase ThiC 0.26 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase — —
Mycobacterium tuberculosis H37Rv 0.51 Rv0423c Probable thiamine biosynthesis protein ThiC 0.16 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —

Not shown: 17 genomes with orthologs for BPHYT_RS13220 only; 10 genomes with orthologs for BPHYT_RS14895 only