Conservation of cofitness between BPHYT_RS13220 and BPHYT_RS10100 in Burkholderia phytofirmans PsJN

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS13220 phosphomethylpyrimidine synthase 1.0 BPHYT_RS10100 dihydroxy-acid dehydratase 0.73 4
Paraburkholderia graminis OAS925 0.99 ABIE53_002857 phosphomethylpyrimidine synthase 0.71 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.98 H281DRAFT_00395 hydroxymethylpyrimidine synthase 0.71 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Paraburkholderia sabiae LMG 24235 0.95 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC 0.72 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Herbaspirillum seropedicae SmR1 0.85 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.79 HSERO_RS02650 dihydroxy-acid dehydratase low > 78
Dechlorosoma suillum PS 0.85 Dsui_0422 thiamine biosynthesis protein ThiC 0.77 Dsui_1122 dihydroxy-acid dehydratase — —
Castellaniella sp019104865 MT123 0.78 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC 0.78 ABCV34_RS14810 dihydroxy-acid dehydratase 0.49 3
Marinobacter adhaerens HP15 0.75 HP15_453 thiamine biosynthesis protein thiC 0.69 HP15_595 dihydroxy-acid dehydratase 0.73 28
Pseudomonas putida KT2440 0.75 PP_4922 Phosphomethylpyrimidine synthase 0.72 PP_5128 Dihydroxy-acid dehydratase 0.36 58
Pseudomonas sp. S08-1 0.74 OH686_15885 phosphomethylpyrimidine synthase 0.72 OH686_14100 dihydroxy-acid dehydratase low > 80
Pseudomonas stutzeri RCH2 0.74 Psest_0477 thiamine biosynthesis protein ThiC 0.71 Psest_0234 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.72 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 103
Xanthomonas campestris pv. campestris strain 8004 0.74 Xcc-8004.1066.1 hypothetical protein 0.71 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.59 53
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_13010 thiamine biosynthesis protein ThiC 0.72 AO353_08345 dihydroxy-acid dehydratase low > 101
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_08810 thiamine biosynthesis protein ThiC 0.72 AO356_13250 dihydroxy-acid dehydratase low > 104
Pseudomonas sp. RS175 0.74 PFR28_05091 Phosphomethylpyrimidine synthase 0.72 PFR28_04278 Dihydroxy-acid dehydratase low > 88
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.72 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.72 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.71 PFLU_RS28535 dihydroxy-acid dehydratase 0.38 21
Pseudomonas fluorescens SBW25 0.73 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.71 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_0544 hydroxymethylpyrimidine synthase 0.72 Psyr_0469 dihydroxyacid dehydratase 0.64 21
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_0544 hydroxymethylpyrimidine synthase 0.72 Psyr_0469 dihydroxyacid dehydratase 0.51 13
Pseudomonas simiae WCS417 0.73 PS417_02355 thiamine biosynthesis protein ThiC 0.71 PS417_26890 dihydroxy-acid dehydratase low > 88
Pectobacterium carotovorum WPP14 0.69 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.75 HER17_RS01075 dihydroxy-acid dehydratase 0.75 71
Shewanella loihica PV-4 0.69 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.72 Shew_0292 dihydroxy-acid dehydratase (RefSeq) low > 60
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS04785 phosphomethylpyrimidine synthase ThiC 0.73 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Shewanella amazonensis SB2B 0.68 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.73 Sama_3279 dihydroxy-acid dehydratase (RefSeq) low > 62
Rahnella sp. WP5 0.68 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.71 EX31_RS15005 dihydroxy-acid dehydratase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4198 Thiamin biosynthesis protein ThiC 0.75 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Enterobacter sp. TBS_079 0.68 MPMX20_00217 Phosphomethylpyrimidine synthase 0.74 MPMX20_04499 Dihydroxy-acid dehydratase low > 85
Enterobacter asburiae PDN3 0.67 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.74 EX28DRAFT_4443 dihydroxy-acid dehydratase low > 76
Serratia liquefaciens MT49 0.67 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.73 IAI46_24345 dihydroxy-acid dehydratase low > 86
Escherichia coli Nissle 1917 0.67 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.75 ECOLIN_RS21665 dihydroxy-acid dehydratase 0.55 43
Escherichia coli ECOR27 0.67 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.75 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 75
Escherichia fergusonii Becca 0.67 EFB2_04617 Phosphomethylpyrimidine synthase 0.75 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC101 0.67 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.75 MCAODC_05145 ilvD dihydroxy-acid dehydratase low > 87
Escherichia coli ECRC99 0.67 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.75 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BW25113 0.67 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.75 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.49 45
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.75 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECRC100 0.67 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.75 OKFHMN_14640 ilvD dihydroxy-acid dehydratase low > 80
Escherichia coli ECRC98 0.67 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.75 JDDGAC_18260 ilvD dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC102 0.67 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.75 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC62 0.67 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.75 BNILDI_04750 ilvD dihydroxy-acid dehydratase low > 75
Escherichia coli BL21 0.67 ECD_03871 phosphomethylpyrimidine synthase 0.75 ECD_03649 dihydroxyacid dehydratase 0.54 35
Escherichia coli ECOR38 0.67 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.75 HEPCGN_13350 ilvD dihydroxy-acid dehydratase 0.67 81
Klebsiella michiganensis M5al 0.67 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.74 BWI76_RS00975 dihydroxy-acid dehydratase 0.41 25
Dickeya dadantii 3937 0.67 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.74 DDA3937_RS20155 dihydroxy-acid dehydratase 0.75 37
Pantoea sp. MT58 0.67 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.73 IAI47_01035 dihydroxy-acid dehydratase low > 76
Erwinia tracheiphila SCR3 0.67 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.72 LU632_RS24400 ilvD dihydroxy-acid dehydratase low > 74
Shewanella oneidensis MR-1 0.67 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.72 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_00335 phosphomethylpyrimidine synthase 0.71 CSW01_00140 dihydroxy-acid dehydratase low > 62
Alteromonas macleodii MIT1002 0.66 MIT1002_00097 Phosphomethylpyrimidine synthase 0.72 MIT1002_04041 Dihydroxy-acid dehydratase low > 70
Shewanella sp. ANA-3 0.66 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.73 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) low > 73
Dickeya dianthicola ME23 0.66 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.74 DZA65_RS21335 dihydroxy-acid dehydratase 0.70 47
Dickeya dianthicola 67-19 0.66 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.74 HGI48_RS20295 dihydroxy-acid dehydratase 0.75 60
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF4626 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.64 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Acidovorax sp. GW101-3H11 0.65 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.71 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.74 43
Azospirillum brasilense Sp245 0.64 AZOBR_RS07940 phosphomethylpyrimidine synthase 0.76 AZOBR_RS15015 dihydroxy-acid dehydratase low > 97
Magnetospirillum magneticum AMB-1 0.63 AMB_RS01125 phosphomethylpyrimidine synthase 0.72 AMB_RS12770 dihydroxy-acid dehydratase — —
Sinorhizobium meliloti 1021 0.62 SM_b20615 thiamine biosynthesis protein ThiC 0.73 SMc04045 dihydroxy-acid dehydratase low > 103
Phaeobacter inhibens DSM 17395 0.62 PGA1_c09110 thiamine biosynthesis protein ThiC 0.70 PGA1_c29490 dihydroxy-acid dehydratase LivD low > 62
Agrobacterium fabrum C58 0.62 Atu2569 thiamine biosynthesis protein 0.73 Atu1918 dihydroxy-acid dehydratase — —
Caulobacter crescentus NA1000 0.61 CCNA_02109 thiamine biosynthesis protein thiC 0.73 CCNA_03139 dihydroxy-acid dehydratase low > 66
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02109 thiamine biosynthesis protein thiC 0.73 CCNA_03139 dihydroxy-acid dehydratase low > 67
Rhodopseudomonas palustris CGA009 0.60 TX73_018540 phosphomethylpyrimidine synthase ThiC 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Azospirillum sp. SherDot2 0.60 MPMX19_00336 Phosphomethylpyrimidine synthase 0.75 MPMX19_05356 Dihydroxy-acid dehydratase — —
Rhodospirillum rubrum S1H 0.57 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) 0.70 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) low > 58
Phocaeicola dorei CL03T12C01 0.56 ABI39_RS17760 phosphomethylpyrimidine synthase ThiC 0.62 ABI39_RS12715 dihydroxy-acid dehydratase 0.58 34
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS03280 phosphomethylpyrimidine synthase ThiC 0.62 HMPREF1058_RS16815 dihydroxy-acid dehydratase 0.69 45
Bacteroides stercoris CC31F 0.56 HMPREF1181_RS14685 phosphomethylpyrimidine synthase ThiC 0.63 HMPREF1181_RS08335 dihydroxy-acid dehydratase low > 56
Bacteroides ovatus ATCC 8483 0.56 BACOVA_02358 thiamine biosynthesis protein ThiC 0.61 BACOVA_03302 dihydroxy-acid dehydratase 0.80 14
Bacteroides thetaiotaomicron VPI-5482 0.56 BT0650 thiamine biosynthesis protein ThiC (NCBI ptt file) 0.63 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.46 16
Parabacteroides merdae CL09T00C40 0.56 HMPREF1078_RS03485 phosphomethylpyrimidine synthase ThiC 0.64 HMPREF1078_RS16695 dihydroxy-acid dehydratase low > 61

Not shown: 21 genomes with orthologs for BPHYT_RS13220 only; 5 genomes with orthologs for BPHYT_RS10100 only