Conservation of cofitness between BBR_RS19685 and BBR_RS12855 in Bifidobacterium breve UCC2003

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS19685 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 BBR_RS12855 glycine cleavage system protein H 0.64 18
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS16470 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 CA265_RS18980 glycine cleavage system protein H — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS17055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 ABZR88_RS00300 glycine cleavage system protein GcvH — —
Acinetobacter radioresistens SK82 0.31 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H 0.36 MPMX26_01479 Glycine cleavage system H protein low > 36
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 HMPREF1078_RS05930 glycine cleavage system protein GcvH low > 61
Kangiella aquimarina DSM 16071 0.31 B158DRAFT_0085 rRNA large subunit m3Psi methyltransferase RlmH 0.40 B158DRAFT_0544 glycine cleavage system H protein — —
Pseudomonas sp. S08-1 0.31 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.29 OH686_11170 glycine cleavage system H protein low > 80
Castellaniella sp019104865 MT123 0.31 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 ABCV34_RS08840 glycine cleavage system protein GcvH low > 48
Ralstonia solanacearum GMI1000 0.30 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 RS_RS16505 glycine cleavage system protein H — —
Ralstonia solanacearum PSI07 0.30 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 RPSI07_RS08580 glycine cleavage system protein H low > 81
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 RALBFv3_RS08655 glycine cleavage system protein H low > 76
Ralstonia solanacearum UW163 0.30 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 UW163_RS04955 glycine cleavage system protein H — —
Agrobacterium fabrum C58 0.30 Atu2776 hypothetical protein 0.36 Atu1463 glycine cleavage system component H low > 89
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU1254 conserved hypothetical protein (TIGR) 0.39 DVU1426 gcvH glycine cleavage system H protein (TIGR) low > 55
Pseudomonas putida KT2440 0.29 PP_4808 23S rRNA m3psi1915 methyltransferase 0.29 PP_5193 glycine cleavage system H protein 2 low > 96
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS04710 50S rRNA methyltransferase 0.31 RR42_RS20065 glycine cleavage system protein H low > 128
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4366 Protein of unknown function DUF163 0.32 Psyr_0247 glycine cleavage system H protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4366 Protein of unknown function DUF163 0.32 Psyr_0247 glycine cleavage system H protein low > 86
Ralstonia sp. UNC404CL21Col 0.29 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 ABZR87_RS03930 glycine cleavage system protein GcvH low > 80
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 CSW01_15335 glycine cleavage system protein H low > 62
Dinoroseobacter shibae DFL-12 0.29 Dshi_0088 protein of unknown function DUF163 (RefSeq) 0.36 Dshi_2681 glycine cleavage system H protein (RefSeq) — —
Shewanella loihica PV-4 0.28 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.36 Shew_3063 glycine cleavage system protein H (RefSeq) low > 60
Variovorax sp. OAS795 0.28 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 ABID97_RS19650 glycine cleavage system protein GcvH — —
Rhodospirillum rubrum S1H 0.28 Rru_A1235 Protein of unknown function DUF163 (NCBI) 0.32 Rru_A3050 Glycine cleavage H-protein (NCBI) low > 58
Pseudomonas sp. RS175 0.28 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.32 PFR28_04315 Glycine cleavage system H protein low > 88
Desulfovibrio vulgaris Miyazaki F 0.28 DvMF_0845 protein of unknown function DUF163 (RefSeq) 0.40 DvMF_0225 glycine cleavage system protein H (RefSeq) low > 51
Variovorax sp. SCN45 0.28 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.33 GFF6477 Glycine cleavage system H protein — —
Pseudomonas fluorescens SBW25 0.28 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 PFLU_RS28910 glycine cleavage system protein GcvH low > 109
Pseudomonas simiae WCS417 0.28 PS417_24730 50S rRNA methyltransferase 0.31 PS417_27250 glycine cleavage system protein H — —
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 PFLU_RS28910 glycine cleavage system protein GcvH low > 109
Bacteroides thetaiotaomicron VPI-5482 0.28 BT1562 conserved hypothetical protein (NCBI ptt file) 0.39 BT2519 putative glycine cleavage system H protein (NCBI ptt file) low > 81
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 QEN71_RS29210 glycine cleavage system protein GcvH low > 153
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS10755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 HMPREF1181_RS00935 glycine cleavage system protein GcvH low > 56
Bacteroides ovatus ATCC 8483 0.28 BACOVA_04305 putative rRNA large subunit m3Psi methyltransferase RlmH 0.40 BACOVA_01614 glycine cleavage system H protein low > 94
Paraburkholderia graminis OAS925 0.28 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.31 ABIE53_000237 glycine cleavage system H protein — —
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.30 PfGW456L13_903 Glycine cleavage system H protein low > 87
Shewanella amazonensis SB2B 0.28 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.37 Sama_2720 glycine cleavage system protein H (RefSeq) low > 62
Shewanella oneidensis MR-1 0.28 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.37 SO0780 gcvH glycine cleavage system H protein (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.30 Pf6N2E2_4486 Glycine cleavage system H protein low > 103
Shewanella sp. ANA-3 0.28 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.37 Shewana3_3500 glycine cleavage system protein H (RefSeq) low > 73
Lysobacter sp. OAE881 0.27 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 ABIE51_RS16360 glycine cleavage system protein GcvH low > 62
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.32 H281DRAFT_02410 glycine cleavage system H protein low > 103
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.32 BPHYT_RS19325 glycine cleavage system H protein low > 109
Rhodanobacter denitrificans MT42 0.26 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 LRK55_RS05275 glycine cleavage system protein GcvH low > 63
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 LRK54_RS05505 glycine cleavage system protein GcvH low > 59
Alteromonas macleodii MIT1002 0.26 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.37 MIT1002_02972 Glycine cleavage system H protein — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS15935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 HMPREF1058_RS12495 glycine cleavage system protein GcvH 0.55 13
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 ABZR86_RS18880 glycine cleavage system protein GcvH low > 74
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 OKGIIK_01310 gcvH glycine cleavage system protein GcvH low > 52
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.35 Xcc-8004.1568.1 Glycine cleavage system H protein — —
Dechlorosoma suillum PS 0.25 Dsui_0451 hypothetical protein 0.31 Dsui_2736 glycine cleavage system H protein low > 51
Pantoea sp. MT58 0.25 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 IAI47_03770 glycine cleavage system protein GcvH low > 76
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS11895 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 ABI39_RS04240 glycine cleavage system protein GcvH low > 72
Erwinia tracheiphila SCR3 0.24 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 LU632_RS05910 gcvH glycine cleavage system protein GcvH low > 74
Escherichia coli BL21 0.24 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.38 ECD_02736 glycine cleavage complex lipoylprotein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.38 OHPLBJKB_00811 Glycine cleavage system H protein — —
Escherichia coli BW25113 0.24 b0636 ybeA hypothetical protein (NCBI) 0.38 b2904 gcvH glycine cleavage system protein H (NCBI) low > 76
Escherichia coli Nissle 1917 0.24 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 ECOLIN_RS16170 glycine cleavage system protein GcvH — —
Bosea sp. OAE506 0.24 ABIE41_RS07565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 ABIE41_RS22925 glycine cleavage system protein GcvH low > 77
Escherichia fergusonii Becca 0.24 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.38 EFB2_00998 Glycine cleavage system H protein low > 86
Rahnella sp. WP5 0.24 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 EX31_RS21515 glycine cleavage system protein GcvH low > 89
Escherichia coli ECRC98 0.24 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 JDDGAC_23165 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC100 0.24 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 OKFHMN_19525 gcvH glycine cleavage system protein GcvH low > 80
Escherichia coli ECOR38 0.24 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 HEPCGN_18815 gcvH glycine cleavage system protein GcvH low > 87
Escherichia coli ECRC102 0.24 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 NIAGMN_17290 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECOR27 0.24 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 NOLOHH_11440 gcvH glycine cleavage system protein GcvH low > 75
Escherichia coli ECRC62 0.24 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 BNILDI_09975 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC99 0.24 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 KEDOAH_08615 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC101 0.24 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 MCAODC_10045 gcvH glycine cleavage system protein GcvH low > 87
Pectobacterium carotovorum WPP14 0.23 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 HER17_RS18000 glycine cleavage system protein GcvH low > 75
Serratia liquefaciens MT49 0.23 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 IAI46_20855 glycine cleavage system protein GcvH low > 86
Dickeya dianthicola 67-19 0.23 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 HGI48_RS03395 glycine cleavage system protein GcvH — —
Dickeya dadantii 3937 0.23 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 DDA3937_RS03250 glycine cleavage system protein GcvH — —
Dickeya dianthicola ME23 0.23 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 DZA65_RS03440 glycine cleavage system protein GcvH low > 75
Enterobacter asburiae PDN3 0.22 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.37 EX28DRAFT_2956 glycine cleavage system H protein — —
Klebsiella michiganensis M5al 0.22 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 BWI76_RS23875 glycine cleavage system protein H low > 92
Enterobacter sp. TBS_079 0.22 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.38 MPMX20_03763 Glycine cleavage system H protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.37 GFF3004 Glycine cleavage system H protein low > 78

Not shown: 20 genomes with orthologs for BBR_RS19685 only; 4 genomes with orthologs for BBR_RS12855 only