Conservation of cofitness between B158DRAFT_2018 and B158DRAFT_2154 in Kangiella aquimarina DSM 16071

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Kangiella aquimarina DSM 16071 1.0 B158DRAFT_2018 tRNA dihydrouridine synthase A 1.0 B158DRAFT_2154 tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4) 0.29 17
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 0.66 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA low > 62
Shewanella oneidensis MR-1 0.63 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) 0.64 SO2354 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.63 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.65 Shewana3_2117 PP-loop domain-containing protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.62 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.66 Sama_1801 hypothetical protein (RefSeq) low > 62
Pantoea sp. MT58 0.61 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.67 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA low > 76
Escherichia coli ECRC100 0.61 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.67 OKFHMN_02155 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli ECRC102 0.61 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.67 NIAGMN_26325 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli ECOR27 0.61 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.67 NOLOHH_19870 ttcA tRNA 2-thiocytidine(32) synthetase TtcA low > 75
Escherichia coli ECOR38 0.61 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.68 HEPCGN_26005 ttcA tRNA 2-thiocytidine(32) synthetase TtcA low > 87
Escherichia coli ECRC62 0.61 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.67 BNILDI_18020 ttcA tRNA 2-thiocytidine(32) synthetase TtcA low > 75
Escherichia coli Nissle 1917 0.61 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.68 ECOLIN_RS08065 tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli ECRC98 0.61 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.67 JDDGAC_04715 ttcA tRNA 2-thiocytidine(32) synthetase TtcA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.68 OHPLBJKB_02337 tRNA-cytidine(32) 2-sulfurtransferase low > 73
Dickeya dadantii 3937 0.61 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.67 DDA3937_RS12330 tRNA 2-thiocytidine(32) synthetase TtcA low > 74
Escherichia coli ECRC99 0.61 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.68 KEDOAH_26600 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli BW25113 0.60 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.68 b1344 ydaO predicted C32 tRNA thiolase (NCBI) low > 76
Dickeya dianthicola ME23 0.60 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.66 DZA65_RS12850 tRNA 2-thiocytidine(32) synthetase TtcA low > 75
Escherichia coli BL21 0.60 ECD_03921 tRNA-dihydrouridine synthase A 0.67 ECD_01321 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein low > 61
Escherichia fergusonii Becca 0.60 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.67 EFB2_02583 tRNA-cytidine(32) 2-sulfurtransferase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.67 GFF2648 tRNA(Cytosine32)-2-thiocytidine synthetase low > 78
Enterobacter sp. TBS_079 0.60 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.67 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase low > 85
Shewanella loihica PV-4 0.60 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.63 Shew_1995 PP-loop domain-containing protein (RefSeq) low > 60
Escherichia coli ECRC101 0.60 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.68 MCAODC_16100 ttcA tRNA 2-thiocytidine(32) synthetase TtcA low > 87
Enterobacter asburiae PDN3 0.60 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.67 EX28DRAFT_1007 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control low > 76
Serratia liquefaciens MT49 0.60 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.66 IAI46_13420 tRNA 2-thiocytidine(32) synthetase TtcA low > 86
Pectobacterium carotovorum WPP14 0.60 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.66 HER17_RS09605 tRNA 2-thiocytidine(32) synthetase TtcA low > 75
Dickeya dianthicola 67-19 0.60 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.66 HGI48_RS12410 tRNA 2-thiocytidine(32) synthetase TtcA low > 71
Rahnella sp. WP5 0.59 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.66 EX31_RS06375 tRNA 2-thiocytidine(32) synthetase TtcA low > 89
Klebsiella michiganensis M5al 0.59 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.67 BWI76_RS12710 tRNA 2-thiocytidine(32) synthetase TtcA low > 92
Marinobacter adhaerens HP15 0.57 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.66 HP15_2116 PP-loop domain protein 0.34 7
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_00295 tRNA-dihydrouridine synthase A 0.64 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA low > 101
Alteromonas macleodii MIT1002 0.56 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.67 MIT1002_02139 tRNA 2-thiocytidine biosynthesis protein TtcA low > 70
Acinetobacter radioresistens SK82 0.56 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase 0.56 MPMX26_00810 tRNA-cytidine(32) 2-sulfurtransferase low > 36
Paraburkholderia graminis OAS925 0.55 ABIE53_001975 tRNA-dihydrouridine synthase A 0.60 ABIE53_000036 tRNA 2-thiocytidine biosynthesis protein TtcA low > 113
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS18350 tRNA dihydrouridine(20/20a) synthase DusA 0.65 ABZR86_RS16485 tRNA 2-thiocytidine(32) synthetase TtcA low > 74
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS08700 tRNA-dihydrouridine synthase A 0.62 BPHYT_RS18570 tRNA 2-thiocytidine biosynthesis protein TtcA low > 109
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase 0.61 H281DRAFT_05824 tRNA s(2)C-32 sulfurtransferase low > 103
Erwinia tracheiphila SCR3 0.55 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.62 LU632_RS12165 ttcA tRNA 2-thiocytidine(32) synthetase TtcA low > 74
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_57 tRNA dihydrouridine synthase A 0.64 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase low > 87
Ralstonia solanacearum PSI07 0.55 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA 0.63 RPSI07_RS23130 tRNA 2-thiocytidine(32) synthetase TtcA low > 81
Ralstonia solanacearum UW163 0.54 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA 0.63 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA 0.63 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA low > 76
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS12665 tRNA-dihydrouridine synthase A 0.61 RR42_RS01445 tRNA 2-thiocytidine biosynthesis protein TtcA low > 128
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA 0.64 ABZR87_RS05700 tRNA 2-thiocytidine(32) synthetase TtcA low > 80
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.64 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase low > 103
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.56 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA low > 78
Pseudomonas fluorescens SBW25-INTG 0.54 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.64 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA low > 109
Pseudomonas fluorescens SBW25 0.54 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.64 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA low > 109
Pseudomonas simiae WCS417 0.54 PS417_07740 tRNA-dihydrouridine synthase A 0.64 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA low > 88
Pseudomonas putida KT2440 0.54 PP_2169 tRNA-dihydrouridine synthase A 0.63 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA low > 96
Ralstonia solanacearum GMI1000 0.54 RS_RS06510 tRNA dihydrouridine(20/20a) synthase DusA 0.63 RS_RS00865 tRNA 2-thiocytidine(32) synthetase TtcA low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.65 Psyr_3705 conserved hypothetical protein low > 86
Pseudomonas sp. S08-1 0.54 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.64 OH686_05145 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA low > 80
Pseudomonas sp. RS175 0.54 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.64 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase low > 88
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.65 Psyr_3705 conserved hypothetical protein low > 86
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_02170 tRNA-dihydrouridine synthase A 0.64 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA low > 104
Variovorax sp. OAS795 0.53 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.60 ABID97_RS06505 tRNA 2-thiocytidine(32) synthetase TtcA low > 91
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.5010.1 tRNA dihydrouridine synthase A 0.58 Xcc-8004.5211.1 tRNA(Cytosine32)-2-thiocytidine synthetase low > 74
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 OKGIIK_13200 ttcA tRNA 2-thiocytidine(32) synthetase TtcA low > 52
Pseudomonas stutzeri RCH2 0.52 Psest_2706 tRNA dihydrouridine synthase A 0.64 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control low > 67
Lysobacter sp. OAE881 0.52 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA 0.62 ABIE51_RS01305 tRNA 2-thiocytidine(32) synthetase TtcA low > 62
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA 0.59 LRK54_RS10680 tRNA 2-thiocytidine(32) synthetase TtcA low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA 0.59 LRK55_RS10320 tRNA 2-thiocytidine(32) synthetase TtcA low > 63
Variovorax sp. SCN45 0.51 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.60 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA low > 127
Acidovorax sp. GW101-3H11 0.51 Ac3H11_2288 tRNA dihydrouridine synthase A 0.62 Ac3H11_1817 tRNA(Cytosine32)-2-thiocytidine synthetase low > 79
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.64 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase low > 87
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF4791 tRNA dihydrouridine synthase A 0.59 GFF1658 tRNA(Cytosine32)-2-thiocytidine synthetase 0.49 70
Rhizobium sp. OAE497 0.50 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA 0.45 ABIE40_RS10230 tRNA 2-thiocytidine(32) synthetase TtcA low > 107
Agrobacterium fabrum C58 0.49 Atu1515 hypothetical protein 0.44 Atu1858 hypothetical protein low > 89
Dinoroseobacter shibae DFL-12 0.48 Dshi_2512 TIM-barrel protein, yjbN family (RefSeq) 0.46 Dshi_0330 PP-loop domain protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.48 PGA1_c19230 tRNA-dihydrouridine synthase A 0.45 PGA1_c02110 tRNA 2-thiocytidine biosynthesis protein TtcA low > 62
Castellaniella sp019104865 MT123 0.46 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.59 ABCV34_RS10450 tRNA 2-thiocytidine(32) synthetase TtcA low > 48
Sinorhizobium meliloti 1021 0.43 SMc04235 tRNA-dihydrouridine synthase A 0.47 SMc00534 C32 tRNA thiolase low > 103

Not shown: 10 genomes with orthologs for B158DRAFT_2018 only; 3 genomes with orthologs for B158DRAFT_2154 only