Conservation of cofitness between B158DRAFT_2018 and B158DRAFT_1383 in Kangiella aquimarina DSM 16071

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Kangiella aquimarina DSM 16071 1.0 B158DRAFT_2018 tRNA dihydrouridine synthase A 1.0 B158DRAFT_1383 Protein chain release factor B 0.28 19
Shewanella oneidensis MR-1 0.63 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) 0.48 SO0513 prokaryotic and mitochondrial release factors family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.63 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.47 Shewana3_0512 peptidyl-tRNA hydrolase domain protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.62 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.51 Sama_3193 peptidyl-tRNA hydrolase domain protein (RefSeq) low > 62
Pantoea sp. MT58 0.61 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.58 IAI47_15415 aminoacyl-tRNA hydrolase low > 76
Escherichia coli ECOR38 0.61 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 HEPCGN_08050 arfB aminoacyl-tRNA hydrolase 0.62 17
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.58 OHPLBJKB_03471 Peptidyl-tRNA hydrolase ArfB low > 73
Escherichia coli ECRC102 0.61 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 NIAGMN_07945 arfB aminoacyl-tRNA hydrolase — —
Escherichia coli ECRC62 0.61 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 BNILDI_09230 arfB aminoacyl-tRNA hydrolase low > 75
Escherichia coli ECOR27 0.61 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 NOLOHH_02440 arfB aminoacyl-tRNA hydrolase low > 75
Escherichia coli Nissle 1917 0.61 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.58 ECOLIN_RS01040 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB — —
Escherichia coli ECRC100 0.61 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 OKFHMN_10095 arfB aminoacyl-tRNA hydrolase low > 80
Escherichia coli ECRC99 0.61 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 KEDOAH_18060 arfB aminoacyl-tRNA hydrolase — —
Escherichia coli ECRC98 0.61 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 JDDGAC_13690 arfB aminoacyl-tRNA hydrolase low > 86
Escherichia coli BW25113 0.60 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.59 b0191 yaeJ hypothetical protein (NCBI) low > 76
Escherichia coli BL21 0.60 ECD_03921 tRNA-dihydrouridine synthase A 0.58 ECD_00190 alternative stalled-ribosome rescue factor B; peptidyl-tRNA hydrolase, ribosome-attached low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.54 GFF29 Hypothetical protein YaeJ with similarity to translation release factor low > 78
Escherichia fergusonii Becca 0.60 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.58 EFB2_03852 Peptidyl-tRNA hydrolase ArfB 0.35 34
Enterobacter sp. TBS_079 0.60 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.57 MPMX20_00876 Peptidyl-tRNA hydrolase ArfB low > 85
Shewanella loihica PV-4 0.60 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.48 Shew_3362 hypothetical protein (RefSeq) — —
Enterobacter asburiae PDN3 0.60 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.58 EX28DRAFT_3780 RF-1 domain low > 76
Escherichia coli ECRC101 0.60 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.58 MCAODC_00610 arfB aminoacyl-tRNA hydrolase low > 87
Serratia liquefaciens MT49 0.60 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.57 IAI46_20110 aminoacyl-tRNA hydrolase low > 86
Rahnella sp. WP5 0.59 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.55 EX31_RS12915 aminoacyl-tRNA hydrolase low > 89
Klebsiella michiganensis M5al 0.59 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.55 BWI76_RS05330 aminoacyl-tRNA hydrolase low > 92
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA 0.60 QEN71_RS23175 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 153
Marinobacter adhaerens HP15 0.57 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.57 HP15_876 class I peptide chain release factor low > 73
Azospirillum brasilense Sp245 0.56 AZOBR_RS15935 tRNA-dihydrouridine synthase A 0.34 AZOBR_RS09805 peptide chain release factor I low > 97
Alteromonas macleodii MIT1002 0.56 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.54 MIT1002_03877 Peptidyl-tRNA hydrolase YaeJ low > 70
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_00295 tRNA-dihydrouridine synthase A 0.66 AO353_18560 class I peptide chain release factor low > 101
Azospirillum sp. SherDot2 0.56 MPMX19_00670 tRNA-dihydrouridine(20/20a) synthase 0.32 MPMX19_01515 Peptidyl-tRNA hydrolase ArfB — —
Paraburkholderia graminis OAS925 0.55 ABIE53_001975 tRNA-dihydrouridine synthase A 0.56 ABIE53_001814 ribosome-associated protein low > 113
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS18350 tRNA dihydrouridine(20/20a) synthase DusA 0.39 ABZR86_RS13465 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 74
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase 0.55 H281DRAFT_05089 ribosome-associated protein low > 103
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS08700 tRNA-dihydrouridine synthase A 0.57 BPHYT_RS07990 peptide chain release factor I — —
Erwinia tracheiphila SCR3 0.55 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.47 LU632_RS19850 arfB aminoacyl-tRNA hydrolase 0.48 18
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_57 tRNA dihydrouridine synthase A 0.65 Pf1N1B4_3560 Hypothetical protein YaeJ with similarity to translation release factor — —
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS12665 tRNA-dihydrouridine synthase A 0.49 RR42_RS19995 class I peptide chain release factor — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA 0.43 ABZR87_RS02010 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 80
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.65 Pf6N2E2_5634 Hypothetical protein YaeJ with similarity to translation release factor low > 103
Pseudomonas fluorescens SBW25-INTG 0.54 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.65 PFLU_RS23855 aminoacyl-tRNA hydrolase low > 109
Pseudomonas fluorescens SBW25 0.54 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.65 PFLU_RS23855 aminoacyl-tRNA hydrolase low > 109
Pseudomonas simiae WCS417 0.54 PS417_07740 tRNA-dihydrouridine synthase A 0.65 PS417_22230 class I peptide chain release factor low > 88
Rhodospirillum rubrum S1H 0.54 Rru_A1621 Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) 0.39 Rru_A0097 Class I peptide chain release factor (NCBI) low > 58
Pseudomonas putida KT2440 0.54 PP_2169 tRNA-dihydrouridine synthase A 0.64 PP_2946 peptidyl-tRNA hydrolase, ribosome rescue factor low > 96
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_01364 NIFR3-like protein 0.36 CCNA_01272 peptidyl-tRNA hydrolase family protein low > 67
Caulobacter crescentus NA1000 0.54 CCNA_01364 NIFR3-like protein 0.36 CCNA_01272 peptidyl-tRNA hydrolase family protein low > 66
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_02170 tRNA-dihydrouridine synthase A 0.65 AO356_18535 class I peptide chain release factor low > 104
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.63 Psyr_3579 Class I peptide chain release factor — —
Pseudomonas sp. RS175 0.54 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.65 PFR28_03310 Peptidyl-tRNA hydrolase ArfB low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.63 Psyr_3579 Class I peptide chain release factor low > 86
Pseudomonas sp. S08-1 0.54 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.59 OH686_21180 Peptidyl-tRNA hydrolase ArfB low > 80
Variovorax sp. OAS795 0.53 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.54 ABID97_RS10980 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 91
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.39 OKGIIK_13275 arfB aminoacyl-tRNA hydrolase — —
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.5010.1 tRNA dihydrouridine synthase A 0.42 Xcc-8004.298.1 Hypothetical protein YaeJ with similarity to translation release factor low > 74
Lysobacter sp. OAE881 0.52 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA 0.45 ABIE51_RS00210 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB — —
Pseudomonas stutzeri RCH2 0.52 Psest_2706 tRNA dihydrouridine synthase A 0.61 Psest_2674 Protein chain release factor B low > 67
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA 0.40 LRK54_RS10625 aminoacyl-tRNA hydrolase — —
Rhodanobacter denitrificans MT42 0.51 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA 0.40 LRK55_RS10265 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB — —
Variovorax sp. SCN45 0.51 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.57 GFF2789 Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29) low > 127
Acidovorax sp. GW101-3H11 0.51 Ac3H11_2288 tRNA dihydrouridine synthase A 0.57 Ac3H11_30 Hypothetical protein YaeJ with similarity to translation release factor low > 79
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.65 PfGW456L13_4399 Hypothetical protein YaeJ with similarity to translation release factor — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF4791 tRNA dihydrouridine synthase A 0.48 GFF2597 Hypothetical protein YaeJ with similarity to translation release factor — —
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS10515 tRNA dihydrouridine(20/20a) synthase DusA 0.42 A4249_RS13960 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 48
Rhodopseudomonas palustris CGA009 0.50 TX73_010150 tRNA dihydrouridine(20/20a) synthase DusA 0.42 TX73_022660 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 86
Rhizobium sp. OAE497 0.50 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA 0.34 ABIE40_RS19420 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB — —
Agrobacterium fabrum C58 0.49 Atu1515 hypothetical protein 0.38 Atu0036 hypothetical protein low > 89
Dinoroseobacter shibae DFL-12 0.48 Dshi_2512 TIM-barrel protein, yjbN family (RefSeq) 0.35 Dshi_3342 Class I peptide chain release factor (RefSeq) low > 64
Bosea sp. OAE506 0.48 ABIE41_RS21285 tRNA dihydrouridine(20/20a) synthase DusA 0.44 ABIE41_RS15920 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB — —
Phaeobacter inhibens DSM 17395 0.48 PGA1_c19230 tRNA-dihydrouridine synthase A 0.36 PGA1_c31970 peptidyl-tRNA hydrolase-like protein low > 62
Castellaniella sp019104865 MT123 0.46 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.47 ABCV34_RS13895 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB low > 48
Sinorhizobium meliloti 1021 0.43 SMc04235 tRNA-dihydrouridine synthase A 0.34 SMc02563 peptidyl-tRNA hydrolase domain-containing protein — —

Not shown: 12 genomes with orthologs for B158DRAFT_2018 only; 7 genomes with orthologs for B158DRAFT_1383 only