| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 1.0 | B158DRAFT_0683 | | Transcriptional accessory protein | 0.81 | 6 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.59 | DDA3937_RS19635 | | RNA-binding transcriptional accessory protein | low | > 74 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | DZA65_RS20860 | | RNA-binding transcriptional accessory protein | low | > 75 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | HGI48_RS19770 | | RNA-binding transcriptional accessory protein | low | > 71 |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | HEPCGN_15835 | yhgF | Protein YhgF | low | > 87 |
| Shewanella loihica PV-4 | 0.55 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.61 | Shew_3634 | | RNA-binding S1 domain-containing protein (RefSeq) | low | > 60 |
| Escherichia fergusonii Becca | 0.55 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.60 | EFB2_00421 | | Protein YhgF | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.60 | OHPLBJKB_00296 | | Protein YhgF | low | > 73 |
| Escherichia coli BW25113 | 0.55 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.60 | b3407 | yhgF | orf, hypothetical protein (VIMSS) | — | — |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | ECOLIN_RS19465 | | Tex family protein | low | > 55 |
| Escherichia coli BL21 | 0.55 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.60 | ECD_03259 | | putative transcriptional accessory protein | low | > 61 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | KEDOAH_11115 | yhgF | Protein YhgF | — | — |
| Escherichia coli ECRC101 | 0.55 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | MCAODC_07555 | yhgF | Protein YhgF | low | > 87 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | NIAGMN_14795 | yhgF | Protein YhgF | — | — |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | OKFHMN_17025 | yhgF | Protein YhgF | low | > 80 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | JDDGAC_20655 | yhgF | Protein YhgF | low | > 86 |
| Escherichia coli ECRC62 | 0.54 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | BNILDI_02705 | yhgF | Protein YhgF | low | > 75 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | NOLOHH_08815 | yhgF | Protein YhgF | low | > 75 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.58 | Shewana3_4013 | | RNA-binding S1 domain-containing protein (RefSeq) | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_0709 | | pseudouridine synthase, RluA family | 0.59 | Psest_3996 | | Transcriptional accessory protein | low | > 67 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | IAI46_23800 | | RNA-binding transcriptional accessory protein | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.53 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.59 | PFLU_RS01275 | | RNA-binding transcriptional accessory protein | low | > 109 |
| Marinobacter adhaerens HP15 | 0.53 | HP15_527 | | pseudouridine synthase, RluA family | 0.61 | HP15_216 | | DNA damage response protein (yhgF like) (from data) | 0.46 | 7 |
| Pseudomonas fluorescens SBW25 | 0.53 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.59 | PFLU_RS01275 | | RNA-binding transcriptional accessory protein | low | > 109 |
| Erwinia tracheiphila SCR3 | 0.53 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | LU632_RS22955 | | RNA-binding transcriptional accessory protein | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.62 | MIT1002_04012 | | hypothetical protein | low | > 70 |
| Pseudomonas simiae WCS417 | 0.53 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.59 | PS417_01165 | | transcription accessory protein | — | — |
| Pectobacterium carotovorum WPP14 | 0.53 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.60 | HER17_RS01615 | | RNA-binding transcriptional accessory protein | low | > 75 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.59 | EX28DRAFT_4136 | | Transcriptional accessory protein | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.53 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.59 | PfGW456L13_428 | | Transcription accessory protein (S1 RNA-binding domain) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.53 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.59 | AO353_11740 | | DNA damage response protein (yhgF like) (from data) | low | > 101 |
| Pantoea sp. MT58 | 0.53 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.59 | IAI47_01805 | | RNA-binding transcriptional accessory protein | low | > 76 |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.59 | AO356_10175 | | transcription accessory protein | low | > 104 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.59 | BWI76_RS26655 | | transcription accessory protein | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.59 | GFF611 | | Transcription accessory protein (S1 RNA-binding domain) | low | > 78 |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.59 | Psyr_0257 | | RNA binding S1 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.59 | Psyr_0257 | | RNA binding S1 | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.59 | Pf1N1B4_1771 | | Transcription accessory protein (S1 RNA-binding domain) | — | — |
| Rahnella sp. WP5 | 0.52 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.59 | EX31_RS04840 | | RNA-binding transcriptional accessory protein | low | > 89 |
| Pseudomonas sp. RS175 | 0.52 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.59 | PFR28_04867 | | Protein YhgF | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.59 | Pf6N2E2_3906 | | Transcription accessory protein (S1 RNA-binding domain) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.59 | CSW01_13705 | | RNA-binding transcriptional accessory protein | low | > 62 |
| Shewanella amazonensis SB2B | 0.52 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.59 | Sama_3508 | | hypothetical protein (RefSeq) | — | — |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.59 | MPMX20_04294 | | Protein YhgF | low | > 85 |
| Pseudomonas putida KT2440 | 0.52 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.59 | PP_0245 | | putative transcriptional accessory protein | — | — |
| Pseudomonas sp. S08-1 | 0.51 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.59 | OH686_11100 | | Transcription accessory protein (S1 RNA-binding domain) | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.48 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.55 | Xcc-8004.2426.1 | | Transcription accessory protein (S1 RNA-binding domain) | low | > 74 |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | ABIE51_RS00300 | | Tex family protein | 0.60 | 29 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | ABZR86_RS15750 | | Tex family protein | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | LRK55_RS09820 | | Tex family protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | LRK54_RS10180 | | RNA-binding transcriptional accessory protein | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.43 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | OKGIIK_13735 | tex | RNA-binding transcriptional accessory protein | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.46 | MPMX26_02837 | | Protein YhgF | low | > 36 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.57 | RPSI07_RS15945 | | RNA-binding transcriptional accessory protein | 0.42 | 26 |
| Ralstonia solanacearum IBSBF1503 | 0.40 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.57 | RALBFv3_RS01545 | | RNA-binding transcriptional accessory protein | low | > 76 |
| Ralstonia solanacearum UW163 | 0.40 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.57 | UW163_RS14855 | | RNA-binding transcriptional accessory protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS08205 | | RluA family pseudouridine synthase | 0.58 | RS_RS08180 | | RNA-binding transcriptional accessory protein | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.58 | ABZR87_RS13340 | | Tex family protein | low | > 80 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.52 | ABIE40_RS05475 | | Tex family protein | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.35 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 0.52 | SMc02644 | | hypothetical protein | low | > 103 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.59 | MPMX19_04277 | | Protein YhgF | low | > 112 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.34 | Echvi_0642 | | pseudouridine synthase, RluA family | 0.43 | Echvi_3978 | | Transcriptional accessory protein | low | > 79 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_001905 | | RluA family pseudouridine synthase | 0.54 | TX73_003025 | | Tex family protein | low | > 86 |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.53 | PGA1_c09850 | | S1 domain-containing protein | low | > 62 |
| Agrobacterium fabrum C58 | 0.33 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | 0.51 | Atu0648 | | hypothetical protein | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.33 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | 0.38 | HMPREF1058_RS18285 | | RNA-binding transcriptional accessory protein | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.33 | ABI39_RS02845 | | RluA family pseudouridine synthase | 0.38 | ABI39_RS14580 | | RNA-binding transcriptional accessory protein | low | > 72 |
| Bacteroides stercoris CC31F | 0.33 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | 0.41 | HMPREF1181_RS04035 | | RNA-binding transcriptional accessory protein | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_03528 | | pseudouridine synthase, RluA family | 0.39 | BACOVA_00531 | | Tex-like protein N-terminal domain protein | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.33 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | 0.40 | BT1238 | | putative RNA binding protein with S1 RNA-binding domain (NCBI ptt file) | low | > 81 |
| Magnetospirillum magneticum AMB-1 | 0.32 | AMB_RS16095 | | RluA family pseudouridine synthase | 0.58 | AMB_RS17285 | | RNA-binding transcriptional accessory protein | low | > 64 |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.54 | ABCV34_RS01870 | | Tex family protein | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.52 | GFF4649 | | Transcription accessory protein (S1 RNA-binding domain) | low | > 90 |
| Variovorax sp. SCN45 | 0.30 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.52 | GFF2 | | Transcription accessory protein (S1 RNA-binding domain) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.53 | Ac3H11_2501 | | Transcription accessory protein (S1 RNA-binding domain) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.30 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | 0.40 | HMPREF1078_RS02415 | | Tex family protein | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.29 | CA264_15205 | | RNA pseudouridine synthase | 0.45 | CA264_02750 | | RNA-binding transcriptional accessory protein | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.29 | ABZR88_RS03985 | | RluA family pseudouridine synthase | 0.42 | ABZR88_RS21695 | | Tex family protein | 0.52 | 25 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.29 | CA265_RS14415 | | pseudouridine synthase | 0.44 | CA265_RS18880 | | RNA-binding transcriptional accessory protein | low | > 88 |
| Fusobacterium nucleatum SB010 | 0.29 | HUW76_08575 | | RluA family pseudouridine synthase | 0.35 | HUW76_00320 | | RNA-binding transcriptional accessory protein | low | > 35 |
| Variovorax sp. OAS795 | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.52 | ABID97_RS15930 | | Tex family protein | 0.32 | 64 |
| Methanococcus maripaludis JJ | 0.22 | MMJJ_RS09155 | | RluA family pseudouridine synthase | 0.39 | MMJJ_RS08530 | | RNA-binding transcriptional accessory protein | low | > 28 |
| Methanococcus maripaludis S2 | 0.21 | MMP_RS05225 | | RluA family pseudouridine synthase | 0.38 | MMP_RS05820 | | RNA-binding transcriptional accessory protein | low | > 25 |
Not shown: 10 genomes with orthologs for B158DRAFT_2532 only; 11 genomes with orthologs for B158DRAFT_0683 only