| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E3 | 1.0 | AO353_19135 | | aromatic ring-opening dioxygenase LigB | 1.0 | AO353_25760 | | UDP pyrophosphate phosphatase | 0.32 | 5 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_2248 | | FIG074102: hypothetical protein | 0.88 | PfGW456L13_3016 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.85 | PS417_08545 | | aromatic ring-opening dioxygenase LigB | 0.91 | PS417_13065 | | UDP pyrophosphate phosphatase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.84 | Pf1N1B4_264 | | FIG074102: hypothetical protein | 0.88 | Pf1N1B4_4741 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.84 | AO356_03105 | | aromatic ring-opening dioxygenase LigB | 0.87 | AO356_27775 | | UDP pyrophosphate phosphatase | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.84 | PFLU_RS08495 | | dioxygenase | 0.91 | PFLU_RS13705 | | undecaprenyl-diphosphate phosphatase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.84 | PFLU_RS08495 | | dioxygenase | 0.91 | PFLU_RS13705 | | undecaprenyl-diphosphate phosphatase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.83 | Pf6N2E2_2449 | | FIG074102: hypothetical protein | 0.87 | Pf6N2E2_773 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 103 |
| Pseudomonas sp. RS175 | 0.81 | PFR28_00981 | | 4,5-DOPA dioxygenase extradiol | 0.88 | PFR28_01689 | | Undecaprenyl-diphosphatase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.79 | Psyr_3618 | | Catalytic LigB subunit of aromatic ring-opening dioxygenase | 0.86 | Psyr_3008 | | Undecaprenyl-diphosphatase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.79 | Psyr_3618 | | Catalytic LigB subunit of aromatic ring-opening dioxygenase | 0.86 | Psyr_3008 | | Undecaprenyl-diphosphatase | low | > 86 |
| Pseudomonas putida KT2440 | 0.76 | PP_1869 | | 4,5-DOPA-dioxygenase | 0.83 | PP_2862 | | Undecaprenyl-diphosphatase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.74 | OH686_22555 | | hypothetical protein | 0.82 | OH686_00730 | | undecaprenyl-diphosphatase UppP | — | — |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_09710 | | Dioxygenase | 0.23 | OKGIIK_14940 | | undecaprenyl-diphosphate phosphatase | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_02302 | | 4,5-DOPA dioxygenase extradiol | 0.39 | MPMX26_02574 | | Undecaprenyl-diphosphatase | low | > 36 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.4645.1 | | FIG074102: hypothetical protein | 0.26 | Xcc-8004.245.1 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS08995 | | class III extradiol ring-cleavage dioxygenase | 0.27 | ABZR86_RS15435 | | undecaprenyl-diphosphate phosphatase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.49 | HSERO_RS02940 | | hypothetical protein | 0.57 | HSERO_RS02455 | | UDP pyrophosphate phosphatase | low | > 78 |
| Dechlorosoma suillum PS | 0.49 | Dsui_2354 | | hypothetical protein | 0.55 | Dsui_0449 | | undecaprenyl-diphosphatase UppP | — | — |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS06095 | | class III extradiol ring-cleavage dioxygenase | 0.27 | ABIE51_RS01460 | | undecaprenyl-diphosphate phosphatase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.47 | ABZR87_RS05290 | | class III extradiol ring-cleavage dioxygenase | 0.57 | ABZR87_RS08795 | | undecaprenyl-diphosphate phosphatase | low | > 80 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS12505 | | class III extradiol ring-cleavage dioxygenase | 0.29 | LRK55_RS07875 | | undecaprenyl-diphosphate phosphatase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS12805 | | dioxygenase | 0.29 | LRK54_RS08125 | | undecaprenyl-diphosphate phosphatase | low | > 59 |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS19600 | | aromatic ring-opening dioxygenase LigB | 0.57 | RR42_RS15630 | | UDP pyrophosphate phosphatase | — | — |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_31 | | FIG074102: hypothetical protein | 0.53 | Ac3H11_3630 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 79 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_05688 | | Aromatic ring-opening dioxygenase, catalytic subunit, LigB family | 0.56 | H281DRAFT_04037 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS27690 | | class III extradiol ring-cleavage dioxygenase | 0.54 | QEN71_RS03215 | | undecaprenyl-diphosphate phosphatase | — | — |
| Burkholderia phytofirmans PsJN | 0.44 | BPHYT_RS17535 | | extradiol ring-cleavage dioxygenase class III protein subunit B | 0.54 | BPHYT_RS15475 | | UDP pyrophosphate phosphatase | — | — |
| Shewanella loihica PV-4 | 0.43 | Shew_2275 | | extradiol ring-cleavage dioxygenase III subunit B (RefSeq) | 0.27 | Shew_1004 | | undecaprenyl pyrophosphate phosphatase (RefSeq) | low | > 60 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS04110 | | dioxygenase | 0.57 | UW163_RS00820 | | undecaprenyl-diphosphate phosphatase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS09470 | | dioxygenase | 0.57 | RALBFv3_RS12745 | | undecaprenyl-diphosphate phosphatase | — | — |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS23880 | | dioxygenase | 0.57 | RPSI07_RS20515 | | undecaprenyl-diphosphate phosphatase | — | — |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS00070 | | dioxygenase | 0.57 | RS_RS03525 | | undecaprenyl-diphosphatase | — | — |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_003667 | | 4,5-DOPA dioxygenase extradiol | 0.56 | ABIE53_003261 | | undecaprenyl-diphosphatase | low | > 113 |
| Sphingomonas koreensis DSMZ 15582 | 0.41 | Ga0059261_3703 | | Uncharacterized conserved protein | 0.39 | Ga0059261_1796 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF462 | | FIG074102: hypothetical protein | 0.24 | GFF813 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | — | — |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A0209 | | Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (NCBI) | 0.58 | Rru_A1803 | | Undecaprenol kinase (NCBI) | low | > 58 |
| Pantoea sp. MT58 | 0.39 | IAI47_03120 | | 4,5-DOPA dioxygenase extradiol | 0.40 | IAI47_03080 | | undecaprenyl-diphosphate phosphatase | low | > 76 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS24415 | | dioxygenase | 0.40 | BWI76_RS24480 | | undecaprenyl-diphosphatase | low | > 92 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_03885 | | 4,5-DOPA dioxygenase extradiol | 0.40 | MPMX20_03894 | | Undecaprenyl-diphosphatase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.37 | EX28DRAFT_3076 | | Uncharacterized conserved protein | 0.41 | EX28DRAFT_3085 | | undecaprenyl-diphosphatase UppP | low | > 76 |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_1685 | | extradiol ring-cleavage dioxygenase III subunit B (RefSeq) | 0.26 | Shewana3_3079 | | undecaprenyl pyrophosphate phosphatase (RefSeq) | low | > 73 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_22030 | | 4,5-DOPA dioxygenase extradiol | 0.39 | IAI46_22080 | | undecaprenyl-diphosphate phosphatase | low | > 86 |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS01145 | | dioxygenase | 0.41 | AMB_RS07820 | | UDP pyrophosphate phosphatase | — | — |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_00554 | | 4,5-DOPA dioxygenase extradiol | 0.41 | MPMX19_02659 | | Undecaprenyl-diphosphatase | low | > 112 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.36 | CA265_RS21405 | | 4,5-DOPA dioxygenase extradiol | 0.34 | CA265_RS16150 | | UDP-diphosphatase | low | > 88 |
| Variovorax sp. SCN45 | 0.36 | GFF5260 | | Uncharacterized protein ygiD | 0.53 | GFF6649 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 127 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.36 | GFF3152 | | Uncharacterized protein ygiD | 0.41 | GFF3171 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | 0.45 | 32 |
| Caulobacter crescentus NA1000 | 0.36 | CCNA_03053 | | dioxygenase | 0.34 | CCNA_03719 | | undecaprenyl diphosphatase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.36 | CCNA_03053 | | dioxygenase | 0.34 | CCNA_03719 | | undecaprenyl diphosphatase | — | — |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS01620 | | 4,5-DOPA dioxygenase extradiol | 0.37 | HGI48_RS17175 | | undecaprenyl-diphosphate phosphatase | low | > 71 |
| Shewanella oneidensis MR-1 | 0.36 | SO1909 | | conserved hypothetical protein (NCBI ptt file) | 0.50 | SO4274 | | undecaprenol kinase, putative (NCBI ptt file) | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.36 | LU632_RS20650 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | LU632_RS20695 | bacA | undecaprenyl-diphosphate phosphatase | low | > 74 |
| Escherichia coli BL21 | 0.36 | ECD_02911 | | 4,5- DOPA-extradiol-dioxygenase | 0.40 | ECD_02927 | | undecaprenyl pyrophosphate phosphatase | low | > 61 |
| Escherichia coli ECRC62 | 0.36 | BNILDI_00920 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | BNILDI_01020 | bacA | undecaprenyl-diphosphate phosphatase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.36 | OHPLBJKB_00665 | | 4,5-DOPA dioxygenase extradiol | 0.40 | OHPLBJKB_00647 | | Undecaprenyl-diphosphatase | low | > 73 |
| Escherichia coli ECOR38 | 0.36 | HEPCGN_17665 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | HEPCGN_17560 | bacA | undecaprenyl-diphosphate phosphatase | low | > 87 |
| Escherichia coli BW25113 | 0.36 | b3039 | ygiD | predicted dioxygenase (RefSeq) | 0.40 | b3057 | bacA | undecaprenyl pyrophosphate phosphatase (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_10595 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | NOLOHH_10495 | bacA | undecaprenyl-diphosphate phosphatase | low | > 75 |
| Escherichia coli ECRC99 | 0.35 | KEDOAH_09355 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | KEDOAH_09440 | bacA | undecaprenyl-diphosphate phosphatase | — | — |
| Escherichia coli ECRC98 | 0.35 | JDDGAC_22425 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | JDDGAC_22340 | bacA | undecaprenyl-diphosphate phosphatase | low | > 86 |
| Escherichia coli ECRC102 | 0.35 | NIAGMN_16555 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | NIAGMN_16470 | bacA | undecaprenyl-diphosphate phosphatase | — | — |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS01725 | | 4,5-DOPA dioxygenase extradiol | 0.36 | DDA3937_RS17125 | | undecaprenyl-diphosphate phosphatase | low | > 74 |
| Escherichia coli ECRC100 | 0.35 | OKFHMN_18790 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | OKFHMN_18705 | bacA | undecaprenyl-diphosphate phosphatase | low | > 80 |
| Escherichia coli ECRC101 | 0.35 | MCAODC_09305 | ygiD | 4,5-DOPA dioxygenase extradiol | 0.40 | MCAODC_09220 | bacA | undecaprenyl-diphosphate phosphatase | low | > 87 |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS01695 | | 4,5-DOPA dioxygenase extradiol | 0.37 | DZA65_RS18260 | | undecaprenyl-diphosphate phosphatase | low | > 75 |
| Rahnella sp. WP5 | 0.35 | EX31_RS08115 | | 4,5-DOPA dioxygenase extradiol | 0.38 | EX31_RS08165 | | undecaprenyl-diphosphate phosphatase | low | > 89 |
| Escherichia fergusonii Becca | 0.35 | EFB2_00767 | | 4,5-DOPA dioxygenase extradiol | 0.40 | EFB2_00754 | | Undecaprenyl-diphosphatase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS17550 | | 4,5-DOPA dioxygenase extradiol | 0.40 | ECOLIN_RS17655 | | undecaprenyl-diphosphate phosphatase | low | > 55 |
| Pectobacterium carotovorum WPP14 | 0.35 | HER17_RS19840 | | 4,5-DOPA dioxygenase extradiol | 0.39 | HER17_RS04015 | | undecaprenyl-diphosphate phosphatase | low | > 75 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.34 | CA264_02195 | | dioxygenase | 0.32 | CA264_04645 | | UDP-diphosphatase | — | — |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS07060 | | 4,5-DOPA dioxygenase extradiol | 0.53 | ABID97_RS20835 | | undecaprenyl-diphosphate phosphatase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.33 | Echvi_4002 | | Uncharacterized conserved protein | 0.19 | Echvi_3275 | | Uncharacterized bacitracin resistance protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_2164 | | Uncharacterized conserved protein | 0.83 | Psest_2113 | | undecaprenyl-diphosphatase UppP | — | — |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_022210 | | class III extradiol ring-cleavage dioxygenase | 0.39 | TX73_000225 | | undecaprenyl-diphosphate phosphatase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.28 | DvMF_1507 | | Extradiol ring-cleavage dioxygenase class III protein subunit B (RefSeq) | 0.35 | DvMF_0378 | | undecaprenol kinase (RefSeq) | low | > 51 |
Not shown: 7 genomes with orthologs for AO353_19135 only; 16 genomes with orthologs for AO353_25760 only