Conservation of cofitness between AO353_16875 and AO353_08280 in Pseudomonas fluorescens FW300-N2E3

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E3 1.0 AO353_16875 ribosomal protein S12 methylthiotransferase RimO 1.0 AO353_08280 3-mercaptopyruvate sulfurtransferase 0.31 14
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.85 PfGW456L13_987 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) low > 87
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.88 Pf1N1B4_2317 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) low > 87
Pseudomonas sp. RS175 0.97 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO 0.83 PFR28_04264 Putative thiosulfate sulfurtransferase SseB low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_05600 ribosomal protein S12 methylthiotransferase RimO 0.85 AO356_13310 3-mercaptopyruvate sulfurtransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.86 Pf6N2E2_4577 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) low > 103
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.77 PFLU_RS28480 sulfurtransferase low > 109
Pseudomonas fluorescens SBW25 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.77 PFLU_RS28480 sulfurtransferase low > 109
Pseudomonas simiae WCS417 0.96 PS417_05880 ribosomal protein S12 methylthiotransferase 0.78 PS417_26835 3-mercaptopyruvate sulfurtransferase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.75 Psyr_4756 3-mercaptopyruvate sulfurtransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.75 Psyr_4756 3-mercaptopyruvate sulfurtransferase low > 86
Pseudomonas putida KT2440 0.89 PP_1197 ribosomal protein S12 methylthiotransferase 0.77 PP_5118 putative 3-mercaptopyruvate sulfurtransferase low > 96
Pseudomonas sp. S08-1 0.85 OH686_18875 ribosomal protein S12 methylthiotransferase RimO 0.70 OH686_05330 Thiosulfate sulfurtransferase, rhodanese low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_2632 ribosomal protein S12 methylthiotransferase RimO 0.65 Psest_2996 Rhodanese-related sulfurtransferase low > 67
Castellaniella sp019104865 MT123 0.77 ABCV34_RS14230 30S ribosomal protein S12 methylthiotransferase RimO 0.36 ABCV34_RS02215 sulfurtransferase low > 48
Marinobacter adhaerens HP15 0.75 HP15_2459 MiaB-like tRNA modifying enzyme YliG 0.20 HP15_3958 rhodanese domain protein low > 73
Erwinia tracheiphila SCR3 0.72 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.21 LU632_RS17855 sseA 3-mercaptopyruvate sulfurtransferase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.17 GFF2422 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) low > 78
Escherichia coli BL21 0.72 ECD_00802 ribosomal protein S12 methylthiotransferase 0.20 ECD_02413 3-mercaptopyruvate sulfurtransferase low > 61
Escherichia coli ECRC101 0.72 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.20 MCAODC_12200 sseA 3-mercaptopyruvate sulfurtransferase low > 87
Escherichia coli ECOR27 0.72 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.20 NOLOHH_13340 sseA 3-mercaptopyruvate sulfurtransferase low > 75
Escherichia coli ECRC98 0.72 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.20 JDDGAC_25345 sseA 3-mercaptopyruvate sulfurtransferase low > 86
Escherichia coli ECRC102 0.72 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.20 NIAGMN_19440 sseA 3-mercaptopyruvate sulfurtransferase — —
Escherichia coli ECRC99 0.72 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.20 KEDOAH_06550 sseA 3-mercaptopyruvate sulfurtransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO 0.20 OHPLBJKB_01188 3-mercaptopyruvate sulfurtransferase low > 73
Escherichia coli ECRC62 0.72 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.20 BNILDI_12140 sseA 3-mercaptopyruvate sulfurtransferase low > 75
Escherichia coli BW25113 0.72 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) 0.20 b2521 sseA putative thiosulfate sulfurtransferase (VIMSS) low > 76
Escherichia coli ECOR38 0.72 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.20 HEPCGN_20810 sseA 3-mercaptopyruvate sulfurtransferase low > 87
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO 0.20 EX28DRAFT_0120 Rhodanese-related sulfurtransferase low > 76
Escherichia coli Nissle 1917 0.72 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO 0.20 ECOLIN_RS14320 3-mercaptopyruvate sulfurtransferase — —
Escherichia fergusonii Becca 0.72 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO 0.20 EFB2_01369 3-mercaptopyruvate sulfurtransferase low > 86
Escherichia coli ECRC100 0.72 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.20 OKFHMN_21670 sseA 3-mercaptopyruvate sulfurtransferase low > 80
Klebsiella michiganensis M5al 0.72 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO 0.20 BWI76_RS21115 3-mercaptopyruvate sulfurtransferase low > 92
Enterobacter sp. TBS_079 0.71 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO 0.19 MPMX20_03401 3-mercaptopyruvate sulfurtransferase low > 85
Dickeya dianthicola 67-19 0.71 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO 0.17 HGI48_RS15600 3-mercaptopyruvate sulfurtransferase low > 71
Pectobacterium carotovorum WPP14 0.71 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO 0.18 HER17_RS06065 3-mercaptopyruvate sulfurtransferase low > 75
Azospirillum brasilense Sp245 0.70 AZOBR_RS14980 ribosomal protein S12 methylthiotransferase 0.17 AZOBR_RS08695 3-mercaptopyruvate sulfurtransferase low > 97
Dickeya dianthicola ME23 0.70 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO 0.17 DZA65_RS16675 3-mercaptopyruvate sulfurtransferase 0.40 20
Dickeya dadantii 3937 0.70 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO 0.17 DDA3937_RS15495 3-mercaptopyruvate sulfurtransferase low > 74
Azospirillum sp. SherDot2 0.70 MPMX19_05761 Ribosomal protein S12 methylthiotransferase RimO 0.20 MPMX19_01330 3-mercaptopyruvate sulfurtransferase low > 112
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO 0.22 CSW01_17310 3-mercaptopyruvate sulfurtransferase low > 62
Rhodospirillum rubrum S1H 0.69 Rru_A2811 hypothetical protein (NCBI) 0.20 Rru_A1615 3-mercaptopyruvate sulfurtransferase (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.66 AMB_RS15345 30S ribosomal protein S12 methylthiotransferase RimO 0.23 AMB_RS06610 3-mercaptopyruvate sulfurtransferase low > 64
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO 0.42 RALBFv3_RS03730 sulfurtransferase low > 76
Lysobacter sp. OAE881 0.65 ABIE51_RS08160 30S ribosomal protein S12 methylthiotransferase RimO 0.33 ABIE51_RS07585 sulfurtransferase low > 62
Ralstonia solanacearum UW163 0.65 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO 0.42 UW163_RS09940 sulfurtransferase — —
Ralstonia solanacearum GMI1000 0.65 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO 0.42 RS_RS11175 sulfurtransferase — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO 0.42 RPSI07_RS13500 sulfurtransferase low > 81
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO 0.43 ABZR87_RS15660 sulfurtransferase 0.26 49
Dechlorosoma suillum PS 0.65 Dsui_2540 ribosomal protein S12 methylthiotransferase RimO 0.41 Dsui_3504 rhodanese-related sulfurtransferase low > 51
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS01780 30S ribosomal protein S12 methylthiotransferase RimO 0.35 LRK54_RS15180 sulfurtransferase low > 59
Rhodanobacter denitrificans MT42 0.64 LRK55_RS01560 30S ribosomal protein S12 methylthiotransferase RimO 0.35 LRK55_RS14895 sulfurtransferase low > 63
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS09170 ribosomal protein S12 methylthiotransferase RimO 0.43 BPHYT_RS33595 3-mercaptopyruvate sulfurtransferase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_04755 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.36 OKGIIK_03955 Sulfurtransferase low > 52
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS22185 30S ribosomal protein S12 methylthiotransferase RimO 0.41 QEN71_RS15255 sulfurtransferase low > 153
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS07640 ribosomal protein S12 methylthiotransferase 0.42 RR42_RS15030 3-mercaptopyruvate sulfurtransferase low > 128
Shewanella oneidensis MR-1 0.63 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) 0.17 SO1261 mercaptopyruvate sulfurtransferase (NCBI ptt file) low > 76
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS08100 30S ribosomal protein S12 methylthiotransferase RimO 0.37 ABZR86_RS00885 sulfurtransferase low > 74
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00855 SSU ribosomal protein S12P methylthiotransferase 0.44 H281DRAFT_06019 thiosulfate/3-mercaptopyruvate sulfurtransferase low > 103
Paraburkholderia graminis OAS925 0.63 ABIE53_002068 ribosomal protein S12 methylthiotransferase 0.44 ABIE53_004855 thiosulfate/3-mercaptopyruvate sulfurtransferase low > 113
Rhodopseudomonas palustris CGA009 0.63 TX73_013865 30S ribosomal protein S12 methylthiotransferase RimO 0.21 TX73_018725 3-mercaptopyruvate sulfurtransferase low > 86
Sphingomonas koreensis DSMZ 15582 0.62 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO 0.21 Ga0059261_1387 Rhodanese-related sulfurtransferase low > 68
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 0.43 HSERO_RS19150 3-mercaptopyruvate sulfurtransferase low > 78
Dinoroseobacter shibae DFL-12 0.62 Dshi_2618 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.20 Dshi_0146 Rhodanese domain protein (RefSeq) low > 64
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.33 GFF5580 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) — —
Variovorax sp. SCN45 0.61 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) 0.37 GFF6125 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) low > 127
Variovorax sp. OAS795 0.61 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO 0.37 ABID97_RS09255 sulfurtransferase low > 91
Acidovorax sp. GW101-3H11 0.60 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.34 Ac3H11_3561 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) low > 79
Phaeobacter inhibens DSM 17395 0.59 PGA1_c24370 ribosomal protein S12 methylthiotransferase RimO 0.20 PGA1_c29430 3-mercaptopyruvate sulfurtransferase low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15685 30S ribosomal protein S12 methylthiotransferase RimO 0.28 CA264_07665 sulfurtransferase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS16365 30S ribosomal protein S12 methylthiotransferase RimO 0.30 CA265_RS18335 sulfurtransferase low > 88
Synechococcus elongatus PCC 7942 0.31 Synpcc7942_2512 hypothetical protein 0.34 Synpcc7942_2427 3-mercaptopyruvate sulfurtransferase low > 38

Not shown: 16 genomes with orthologs for AO353_16875 only; 9 genomes with orthologs for AO353_08280 only