| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella amazonensis SB2B | 1.0 | Sama_2838 | | sulfite reductase subunit beta (RefSeq) | 1.0 | Sama_3250 | | diaminopimelate decarboxylase (RefSeq) | 0.95 | 18 |
| Alteromonas macleodii MIT1002 | 0.78 | MIT1002_03379 | | Sulfite reductase [NADPH] hemoprotein beta-component | 0.69 | MIT1002_00160 | | Diaminopimelate decarboxylase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.77 | CSW01_02015 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.66 | CSW01_00635 | | diaminopimelate decarboxylase | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.74 | LU632_RS06405 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.17 | LU632_RS06040 | lysA | diaminopimelate decarboxylase | 0.61 | 65 |
| Dickeya dadantii 3937 | 0.74 | DDA3937_RS16940 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | DDA3937_RS20740 | | type III PLP-dependent enzyme | low | > 74 |
| Pantoea sp. MT58 | 0.74 | IAI47_04155 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.16 | IAI47_03860 | | diaminopimelate decarboxylase | 0.87 | 33 |
| Rahnella sp. WP5 | 0.74 | EX31_RS07900 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | EX31_RS02420 | | type III PLP-dependent enzyme | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS04240 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.17 | HER17_RS03710 | | diaminopimelate decarboxylase | 0.87 | 60 |
| Dickeya dianthicola ME23 | 0.73 | DZA65_RS18085 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.19 | DZA65_RS00505 | | type III PLP-dependent enzyme | low | > 75 |
| Serratia liquefaciens MT49 | 0.73 | IAI46_03690 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.19 | IAI46_20520 | | diaminopimelate decarboxylase | low | > 86 |
| Dickeya dianthicola 67-19 | 0.73 | HGI48_RS17010 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.19 | HGI48_RS00505 | | type III PLP-dependent enzyme | low | > 71 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.72 | OHPLBJKB_00970 | | Sulfite reductase [NADPH] hemoprotein beta-component | 0.20 | OHPLBJKB_00891 | | Diaminopimelate decarboxylase | low | > 73 |
| Enterobacter asburiae PDN3 | 0.72 | EX28DRAFT_2852 | | sulfite reductase (NADPH) hemoprotein, beta-component | 0.19 | EX28DRAFT_2916 | | diaminopimelate decarboxylase | 0.89 | 5 |
| Enterobacter sp. TBS_079 | 0.72 | MPMX20_03642 | | Sulfite reductase [NADPH] hemoprotein beta-component | 0.20 | MPMX20_03705 | | Diaminopimelate decarboxylase | 0.58 | 65 |
| Escherichia coli Nissle 1917 | 0.72 | ECOLIN_RS15405 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | ECOLIN_RS15930 | | diaminopimelate decarboxylase | low | > 52 |
| Escherichia coli ECRC98 | 0.72 | JDDGAC_24040 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | JDDGAC_23610 | lysA | diaminopimelate decarboxylase | — | — |
| Escherichia fergusonii Becca | 0.72 | EFB2_01154 | | Sulfite reductase [NADPH] hemoprotein beta-component | 0.20 | EFB2_01045 | | Diaminopimelate decarboxylase | low | > 86 |
| Escherichia coli ECRC99 | 0.72 | KEDOAH_07750 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | KEDOAH_08185 | lysA | diaminopimelate decarboxylase | — | — |
| Escherichia coli ECRC62 | 0.72 | BNILDI_10740 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | BNILDI_10310 | lysA | diaminopimelate decarboxylase | — | — |
| Escherichia coli ECRC101 | 0.72 | OKFHMN_20375 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | OKFHMN_19945 | lysA | diaminopimelate decarboxylase | — | — |
| Escherichia coli ECRC102 | 0.72 | NIAGMN_18145 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | NIAGMN_17715 | lysA | diaminopimelate decarboxylase | — | — |
| Escherichia coli ECOR27 | 0.72 | NOLOHH_12190 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | NOLOHH_11830 | lysA | diaminopimelate decarboxylase | low | > 57 |
| Escherichia coli ECRC101 | 0.72 | MCAODC_10900 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | MCAODC_10470 | lysA | diaminopimelate decarboxylase | — | — |
| Escherichia coli BL21 | 0.71 | ECD_02608 | | sulfite reductase, beta subunit, NAD(P)-binding, heme-binding | 0.20 | ECD_02686 | | diaminopimelate decarboxylase, PLP-binding | low | > 60 |
| Escherichia coli BW25113 | 0.71 | b2763 | cysI | sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI) | 0.20 | b2838 | lysA | diaminopimelate decarboxylase, PLP-binding (NCBI) | 0.89 | 44 |
| Escherichia coli ECOR38 | 0.71 | HEPCGN_19090 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.20 | HEPCGN_19565 | lysA | diaminopimelate decarboxylase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.71 | GFF4819 | | Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) | 0.20 | GFF1323 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | low | > 78 |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS22760 | | sulfite reductase subunit beta | 0.20 | BWI76_RS23360 | | diaminopimelate decarboxylase | 0.74 | 60 |
| Shewanella sp. ANA-3 | 0.60 | Shewana3_0856 | | sulfite reductase subunit beta (RefSeq) | 0.84 | Shewana3_0390 | | diaminopimelate decarboxylase (RefSeq) | 0.93 | 16 |
| Shewanella oneidensis MR-1 | 0.60 | SO3737 | cysI | sulfite reductase (NADPH) hemoprotein beta-component (cysI) (NCBI ptt file) | 0.84 | SO4309 | lysA | diaminopimelate decarboxylase (NCBI ptt file) | 0.95 | 17 |
| Shewanella loihica PV-4 | 0.58 | Shew_0666 | | sulfite reductase subunit beta (RefSeq) | 0.81 | Shew_0322 | | diaminopimelate decarboxylase (RefSeq) | 0.91 | 34 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS05900 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.40 | ABZR86_RS12130 | | diaminopimelate decarboxylase | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_2161 | | sulfite reductase (NADPH) beta subunit (EC 1.8.1.2) | 0.19 | B158DRAFT_0272 | | pyridoxal-dependent decarboxylase, exosortase A system-associated | — | — |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_05965 | cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.39 | OKGIIK_12375 | lysA | diaminopimelate decarboxylase | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.48 | LRK54_RS00925 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.39 | LRK54_RS11485 | | diaminopimelate decarboxylase | low | > 59 |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS15830 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.38 | ABIE51_RS13675 | | diaminopimelate decarboxylase | low | > 62 |
| Castellaniella sp019104865 MT123 | 0.46 | ABCV34_RS00215 | | assimilatory sulfite reductase (NADPH) hemoprotein subunit | 0.52 | ABCV34_RS12685 | | diaminopimelate decarboxylase | — | — |
| Synechococcus elongatus PCC 7942 | 0.32 | Synpcc7942_0019 | sir | Sulfite reductase, ferredoxin dependent | 0.24 | Synpcc7942_0262 | lysA | diaminopimelate decarboxylase | — | — |
| Mycobacterium tuberculosis H37Rv | 0.10 | Rv2391 | | Ferredoxin-dependent sulfite reductase SirA | 0.21 | Rv1293 | | Diaminopimelate decarboxylase LysA (DAP decarboxylase) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.10 | HSERO_RS15550 | | sulfite reductase | 0.53 | HSERO_RS00950 | | diaminopimelate decarboxylase | — | — |
| Rhodospirillum rubrum S1H | 0.09 | Rru_A1931 | | Ferredoxin--nitrite reductase (NCBI) | 0.43 | Rru_A0396 | | Diaminopimelate decarboxylase (NCBI) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.09 | TX73_021840 | | nitrite/sulfite reductase | 0.46 | TX73_024635 | | diaminopimelate decarboxylase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.09 | CCNA_01177 | | sulfite reductase, beta subunit | 0.44 | CCNA_02296 | | diaminopimelate decarboxylase | — | — |
| Caulobacter crescentus NA1000 | 0.09 | CCNA_01177 | | sulfite reductase, beta subunit | 0.44 | CCNA_02296 | | diaminopimelate decarboxylase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.09 | Ga0059261_1498 | | Sulfite reductase, beta subunit (hemoprotein) | 0.41 | Ga0059261_2051 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.88 | 29 |
| Pseudomonas fluorescens FW300-N2E3 | 0.09 | AO353_22865 | | sulfite reductase | 0.59 | AO353_09035 | | diaminopimelate decarboxylase | — | — |
| Azospirillum sp. SherDot2 | 0.09 | MPMX19_00652 | | Sulfite reductase [ferredoxin] | 0.44 | MPMX19_05819 | | Diaminopimelate decarboxylase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.08 | Pf1N1B4_4656 | | Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) | 0.61 | Pf1N1B4_2174 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.08 | PGA1_c20760 | | putative nitrite/sulfite reductase | 0.46 | PGA1_c03470 | | diaminopimelate decarboxylase LysA | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.08 | PfGW456L13_3285 | | Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) | 0.61 | PfGW456L13_845 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | low | > 87 |
| Dinoroseobacter shibae DFL-12 | 0.08 | Dshi_1153 | | nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein (RefSeq) | 0.47 | Dshi_3059 | | diaminopimelate decarboxylase (RefSeq) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.08 | ABZR87_RS00210 | | nitrite/sulfite reductase | 0.54 | ABZR87_RS02640 | | diaminopimelate decarboxylase | 0.75 | 36 |
| Ralstonia solanacearum UW163 | 0.08 | UW163_RS09070 | | sulfite reductase | 0.55 | UW163_RS06625 | | diaminopimelate decarboxylase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.08 | RALBFv3_RS04600 | | sulfite reductase | 0.55 | RALBFv3_RS06990 | | diaminopimelate decarboxylase | — | — |
| Ralstonia solanacearum GMI1000 | 0.08 | RS_RS12170 | | nitrite/sulfite reductase | 0.55 | RS_RS14930 | | diaminopimelate decarboxylase | — | — |
| Azospirillum brasilense Sp245 | 0.08 | AZOBR_RS10125 | | sulfite reductase | 0.44 | AZOBR_RS16945 | | diaminopimelate decarboxylase | — | — |
| Ralstonia solanacearum PSI07 | 0.08 | RPSI07_RS12775 | | nitrite/sulfite reductase | 0.55 | RPSI07_RS10250 | | diaminopimelate decarboxylase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.08 | H281DRAFT_00114 | | sulfite reductase (NADPH) beta subunit | 0.54 | H281DRAFT_05606 | | diaminopimelate decarboxylase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.08 | QEN71_RS36875 | | nitrite/sulfite reductase | 0.55 | QEN71_RS28080 | | diaminopimelate decarboxylase | low | > 153 |
| Bosea sp. OAE506 | 0.08 | ABIE41_RS15335 | | nitrite/sulfite reductase | 0.39 | ABIE41_RS08740 | | diaminopimelate decarboxylase | — | — |
| Paraburkholderia graminis OAS925 | 0.08 | ABIE53_001226 | | sulfite reductase (NADPH) hemoprotein beta-component | 0.55 | ABIE53_003749 | | diaminopimelate decarboxylase | low | > 113 |
| Sinorhizobium meliloti 1021 | 0.07 | SMc02124 | | nitrite reductase | 0.51 | SMc00723 | | diaminopimelate DAP decarboxylase | — | — |
| Burkholderia phytofirmans PsJN | 0.07 | BPHYT_RS22415 | | nitrite reductase | 0.54 | BPHYT_RS17930 | | diaminopimelate decarboxylase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.07 | OH686_03470 | | Sulfite reductase [NADPH] hemoprotein beta-component | 0.58 | OH686_13800 | | diaminopimelate decarboxylase | low | > 80 |
| Pseudomonas putida KT2440 | 0.07 | PP_2371 | | Sulphite reductase hemoprotein, beta subunit | 0.60 | PP_5227 | | diaminopimelate decarboxylase | 0.46 | 64 |
| Pseudomonas syringae pv. syringae B728a | 0.07 | Psyr_2462 | | Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region | 0.60 | Psyr_0182 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.07 | Psyr_2462 | | Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region | 0.60 | Psyr_0182 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.07 | Pf6N2E2_2073 | | Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) | 0.60 | Pf6N2E2_4419 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Pseudomonas sp. RS175 | 0.06 | PFR28_01366 | | Sulfite reductase [ferredoxin] | 0.60 | PFR28_04375 | | Diaminopimelate decarboxylase | — | — |
| Agrobacterium fabrum C58 | 0.06 | Atu1456 | | sulfite reductase (NADPH) hemoprotein beta-component | 0.51 | Atu3601 | | diaminopimelate decarboxylase | — | — |
| Pseudomonas simiae WCS417 | 0.06 | PS417_12290 | | sulfite reductase | 0.58 | PS417_27580 | | diaminopimelate decarboxylase | — | — |
| Variovorax sp. SCN45 | 0.06 | GFF1206 | | Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) | 0.51 | GFF5315 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | — | — |
| Pseudomonas stutzeri RCH2 | 0.06 | Psest_2089 | | Sulfite reductase, beta subunit (hemoprotein) | 0.60 | Psest_3764 | | diaminopimelate decarboxylase | — | — |
Not shown: 1 genomes with orthologs for Sama_2838 only; 28 genomes with orthologs for Sama_3250 only